Wall clock time and date at job start Tue Mar 31 2020 13:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 109.47129 * 2 1 4 4 C 1.81399 * 103.00236 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.38301 * 119.96434 * 269.98163 * 5 4 3 7 7 C 1.38258 * 120.13923 * 180.02562 * 6 5 4 8 8 C 1.38137 * 120.07026 * 359.67485 * 7 6 5 9 9 C 1.38848 * 119.92747 * 0.59786 * 8 7 6 10 10 N 1.39949 * 120.06972 * 179.69630 * 9 8 7 11 11 C 1.34778 * 120.00109 * 212.99914 * 10 9 8 12 12 O 1.21588 * 119.99680 * 5.31626 * 11 10 9 13 13 N 1.34774 * 120.00227 * 185.31977 * 11 10 9 14 14 C 1.46496 * 120.00207 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46978 * 324.99393 * 14 13 11 16 16 C 1.50707 * 109.46958 * 205.00035 * 14 13 11 17 17 H 1.07998 * 120.00006 * 359.97438 * 16 14 13 18 18 C 1.37880 * 119.99561 * 180.02562 * 16 14 13 19 19 N 1.31510 * 120.00182 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 119.99492 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47172 * 90.00046 * 20 18 16 22 22 H 1.48508 * 109.46933 * 209.99570 * 20 18 16 23 23 H 1.48494 * 109.47390 * 329.99743 * 20 18 16 24 24 C 1.52993 * 109.47259 * 85.00019 * 14 13 11 25 25 C 1.53005 * 109.46758 * 294.99981 * 24 14 13 26 26 C 1.38094 * 119.96481 * 90.00032 * 5 4 3 27 27 H 1.08995 * 109.46905 * 299.99594 * 1 2 3 28 28 H 1.08996 * 109.47154 * 59.99461 * 1 2 3 29 29 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47061 * 240.00598 * 2 1 3 31 31 H 1.08996 * 109.47680 * 120.00550 * 2 1 3 32 32 H 1.09004 * 109.47164 * 59.99947 * 4 3 2 33 33 H 1.08997 * 109.47206 * 300.00222 * 4 3 2 34 34 H 1.07995 * 119.93120 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.96503 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.04114 * 180.31651 * 8 7 6 37 37 H 0.96993 * 119.99924 * 33.00077 * 10 9 8 38 38 H 0.97002 * 119.99598 * 0.02562 * 13 11 10 39 39 H 0.97007 * 119.99837 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.47586 * 54.99656 * 24 14 13 41 41 H 1.09005 * 109.47437 * 175.00336 * 24 14 13 42 42 H 1.09008 * 109.46946 * 180.02562 * 25 24 14 43 43 H 1.09001 * 109.47159 * 299.99461 * 25 24 14 44 44 H 1.08997 * 109.47369 * 60.00398 * 25 24 14 45 45 H 1.08007 * 120.03381 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5059 -0.0008 5 6 4.5964 2.8610 -0.0002 6 6 4.8984 3.4827 -1.1981 7 6 5.5038 4.7257 -1.2018 8 6 5.8026 5.3536 -0.0083 9 6 5.5058 4.7296 1.1961 10 7 5.8131 5.3602 2.4070 11 6 6.1675 4.6244 3.4791 12 8 6.3144 3.4223 3.3697 13 7 6.3591 5.2208 4.6724 14 6 6.7439 4.4209 5.8378 15 1 6.2599 3.4457 5.7849 16 6 6.3125 5.1279 7.0969 17 1 5.8032 6.0783 7.0351 18 6 6.5692 4.5619 8.3277 19 7 7.1898 3.4050 8.4029 20 14 6.0352 5.4386 9.8883 21 1 4.6620 5.0071 10.2534 22 1 6.9702 5.0996 10.9912 23 1 6.0489 6.9060 9.6612 24 6 8.2626 4.2367 5.8511 25 6 8.6867 3.4105 4.6352 26 6 4.8985 3.4805 1.1964 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.2399 0.9545 -0.8910 33 1 4.2406 0.9542 0.8889 34 1 4.6610 2.9962 -2.1326 35 1 5.7388 5.2085 -2.1389 36 1 6.2708 6.3268 -0.0117 37 1 5.7709 6.3269 2.4748 38 1 6.2416 6.1797 4.7597 39 1 7.3700 3.0066 9.2689 40 1 8.7473 5.2123 5.8144 41 1 8.5578 3.7183 6.7634 42 1 9.7688 3.2788 4.6448 43 1 8.2021 2.4348 4.6719 44 1 8.3916 3.9287 3.7228 45 1 4.6630 2.9942 2.1315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157520573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:17 Heat of formation + Delta-G solvation = -17.769010 kcal Electronic energy + Delta-G solvation = -24527.248208 eV Core-core repulsion = 21056.428874 eV Total energy + Delta-G solvation = -3470.819334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25840 -38.59734 -35.54470 -34.33622 -32.98403 -32.55319 -32.30993 -30.94474 -29.21592 -27.24191 -26.79880 -23.72765 -23.36488 -22.57439 -21.40054 -20.47950 -19.51445 -18.16073 -17.23570 -16.23454 -16.12402 -15.92793 -15.47981 -15.09639 -14.95048 -14.85212 -14.58832 -14.21150 -13.82736 -13.47929 -13.19041 -12.95973 -12.70682 -12.66001 -12.54463 -12.22662 -11.75475 -11.64031 -11.56191 -11.48176 -11.26250 -11.17759 -10.96406 -10.86127 -10.32600 -10.18894 -10.12875 -9.98451 -9.60522 -9.38191 -9.05563 -8.61865 -8.51642 -8.01691 -7.76382 -7.66940 -6.13907 -4.23174 1.00179 1.54061 1.90528 2.51529 3.18794 3.23988 3.31006 3.33535 3.70588 4.10064 4.31099 4.59205 4.69359 4.75832 4.77147 5.00034 5.11651 5.15465 5.18045 5.21229 5.38081 5.42740 5.47544 5.55644 5.69210 5.80534 5.83402 6.06310 6.40176 6.43055 6.46854 6.48826 6.61108 6.66238 6.74500 7.01770 7.11123 7.24911 7.34755 7.37214 7.45109 7.63336 7.85569 7.97546 8.17347 8.72263 8.83635 9.24303 9.45346 10.91440 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003012 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.788682 B = 9294.282442 C =10594.162064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 S -0.254 6.254 4 C -0.041 4.041 5 C -0.059 4.059 6 C -0.130 4.130 7 C -0.101 4.101 8 C -0.152 4.152 9 C 0.185 3.815 10 N -0.698 5.698 11 C 0.692 3.308 12 O -0.575 6.575 13 N -0.718 5.718 14 C 0.287 3.713 15 H 0.050 0.950 16 C -0.534 4.534 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.881 5.881 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.100 4.100 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.402 0.598 38 H 0.386 0.614 39 H 0.265 0.735 40 H 0.030 0.970 41 H 0.099 0.901 42 H 0.021 0.979 43 H 0.049 0.951 44 H 0.038 0.962 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 -0.558 -18.655 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.244 4.244 3 S -0.026 6.026 4 C -0.188 4.188 5 C -0.061 4.061 6 C -0.150 4.150 7 C -0.120 4.120 8 C -0.174 4.174 9 C 0.088 3.912 10 N -0.345 5.345 11 C 0.393 3.607 12 O -0.453 6.453 13 N -0.369 5.369 14 C 0.185 3.815 15 H 0.068 0.932 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.136 4.136 19 N -0.519 5.519 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.168 4.168 25 C -0.192 4.192 26 C -0.123 4.123 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.237 0.763 38 H 0.218 0.782 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.202 -0.938 -18.433 19.813 hybrid contribution 0.532 0.285 0.977 1.148 sum -6.670 -0.653 -17.456 18.699 Atomic orbital electron populations 1.21497 0.92310 1.02390 1.03213 1.23329 1.00193 0.96026 1.04833 1.87175 1.05189 1.12127 1.98069 1.22259 0.92952 0.97869 1.05722 1.18977 0.99133 0.94597 0.93368 1.20855 1.01295 0.95865 0.97022 1.20789 0.98948 0.95003 0.97244 1.20877 1.03794 1.01511 0.91255 1.17468 0.95449 0.93569 0.84702 1.42902 1.72400 1.09886 1.09338 1.16111 0.78380 0.85680 0.80541 1.90900 1.57946 1.12523 1.83881 1.45846 1.71676 1.11286 1.08122 1.18717 0.91479 0.91717 0.79596 0.93222 1.21220 1.38870 1.06871 0.90316 0.92097 1.24873 0.94753 0.94937 0.99080 1.69896 1.40238 1.16599 1.25147 0.86447 0.78488 0.79755 0.82394 1.20550 1.21072 1.19878 1.21960 0.98122 0.97898 0.98774 1.21815 0.97554 1.00906 0.98972 1.21121 0.97417 0.95069 0.98654 0.91585 0.91795 0.91237 0.90298 0.90021 0.89340 0.88888 0.86252 0.85861 0.85920 0.76328 0.78230 0.92541 0.95107 0.88258 0.96017 0.93170 0.94294 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.92 37.16 0.37 -0.70 16 2 C -0.10 -0.87 6.66 37.16 0.25 -0.62 16 3 S -0.25 -3.08 21.72 -107.50 -2.33 -5.41 16 4 C -0.04 -0.48 6.07 36.01 0.22 -0.27 16 5 C -0.06 -0.80 5.14 -104.65 -0.54 -1.34 16 6 C -0.13 -1.53 9.70 -39.55 -0.38 -1.91 16 7 C -0.10 -1.13 10.04 -39.61 -0.40 -1.52 16 8 C -0.15 -1.87 9.96 -39.39 -0.39 -2.26 16 9 C 0.18 2.80 6.28 -83.69 -0.53 2.27 16 10 N -0.70 -10.70 5.35 -14.22 -0.08 -10.77 16 11 C 0.69 13.64 6.87 -86.92 -0.60 13.05 16 12 O -0.58 -13.21 11.16 5.29 0.06 -13.15 16 13 N -0.72 -14.57 5.03 -59.82 -0.30 -14.87 16 14 C 0.29 7.10 2.24 -69.08 -0.15 6.94 16 15 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 16 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 19 N -0.88 -24.43 11.29 55.43 0.63 -23.80 16 20 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 25 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 26 C -0.10 -1.62 8.31 -39.40 -0.33 -1.95 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 0.87 8.09 -51.92 -0.42 0.45 16 33 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.40 4.77 8.83 -40.82 -0.36 4.41 16 38 H 0.39 6.72 8.56 -40.82 -0.35 6.38 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 44 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 45 H 0.14 2.67 6.41 -52.48 -0.34 2.33 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -30.30 378.77 -11.10 -41.40 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -7.06 Total: 12.29 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.71 Total: -6.80 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.25 Total: -49.45 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.06 Total: -13.15 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.33 Total: -5.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.30 -11.10 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157520573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.635 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds