Wall clock time and date at job start Tue Mar 31 2020 13:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 109.47129 * 2 1 4 4 C 1.81399 * 103.00236 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.38301 * 119.96434 * 269.98163 * 5 4 3 7 7 C 1.38258 * 120.13923 * 180.02562 * 6 5 4 8 8 C 1.38137 * 120.07026 * 359.67485 * 7 6 5 9 9 C 1.38848 * 119.92747 * 0.59786 * 8 7 6 10 10 N 1.39949 * 120.06972 * 179.69630 * 9 8 7 11 11 C 1.34778 * 120.00109 * 212.99914 * 10 9 8 12 12 O 1.21588 * 119.99680 * 5.31626 * 11 10 9 13 13 N 1.34774 * 120.00227 * 185.31977 * 11 10 9 14 14 C 1.46496 * 120.00207 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46978 * 324.99393 * 14 13 11 16 16 C 1.50707 * 109.46958 * 205.00035 * 14 13 11 17 17 H 1.07998 * 120.00006 * 359.97438 * 16 14 13 18 18 C 1.37880 * 119.99561 * 180.02562 * 16 14 13 19 19 N 1.31510 * 120.00182 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 119.99492 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47172 * 90.00046 * 20 18 16 22 22 H 1.48508 * 109.46933 * 209.99570 * 20 18 16 23 23 H 1.48494 * 109.47390 * 329.99743 * 20 18 16 24 24 C 1.52993 * 109.47259 * 85.00019 * 14 13 11 25 25 C 1.53005 * 109.46758 * 294.99981 * 24 14 13 26 26 C 1.38094 * 119.96481 * 90.00032 * 5 4 3 27 27 H 1.08995 * 109.46905 * 299.99594 * 1 2 3 28 28 H 1.08996 * 109.47154 * 59.99461 * 1 2 3 29 29 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47061 * 240.00598 * 2 1 3 31 31 H 1.08996 * 109.47680 * 120.00550 * 2 1 3 32 32 H 1.09004 * 109.47164 * 59.99947 * 4 3 2 33 33 H 1.08997 * 109.47206 * 300.00222 * 4 3 2 34 34 H 1.07995 * 119.93120 * 0.02562 * 6 5 4 35 35 H 1.08004 * 119.96503 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.04114 * 180.31651 * 8 7 6 37 37 H 0.96993 * 119.99924 * 33.00077 * 10 9 8 38 38 H 0.97002 * 119.99598 * 0.02562 * 13 11 10 39 39 H 0.97007 * 119.99837 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.47586 * 54.99656 * 24 14 13 41 41 H 1.09005 * 109.47437 * 175.00336 * 24 14 13 42 42 H 1.09008 * 109.46946 * 180.02562 * 25 24 14 43 43 H 1.09001 * 109.47159 * 299.99461 * 25 24 14 44 44 H 1.08997 * 109.47369 * 60.00398 * 25 24 14 45 45 H 1.08007 * 120.03381 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5059 -0.0008 5 6 4.5964 2.8610 -0.0002 6 6 4.8984 3.4827 -1.1981 7 6 5.5038 4.7257 -1.2018 8 6 5.8026 5.3536 -0.0083 9 6 5.5058 4.7296 1.1961 10 7 5.8131 5.3602 2.4070 11 6 6.1675 4.6244 3.4791 12 8 6.3144 3.4223 3.3697 13 7 6.3591 5.2208 4.6724 14 6 6.7439 4.4209 5.8378 15 1 6.2599 3.4457 5.7849 16 6 6.3125 5.1279 7.0969 17 1 5.8032 6.0783 7.0351 18 6 6.5692 4.5619 8.3277 19 7 7.1898 3.4050 8.4029 20 14 6.0352 5.4386 9.8883 21 1 4.6620 5.0071 10.2534 22 1 6.9702 5.0996 10.9912 23 1 6.0489 6.9060 9.6612 24 6 8.2626 4.2367 5.8511 25 6 8.6867 3.4105 4.6352 26 6 4.8985 3.4805 1.1964 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.2399 0.9545 -0.8910 33 1 4.2406 0.9542 0.8889 34 1 4.6610 2.9962 -2.1326 35 1 5.7388 5.2085 -2.1389 36 1 6.2708 6.3268 -0.0117 37 1 5.7709 6.3269 2.4748 38 1 6.2416 6.1797 4.7597 39 1 7.3700 3.0066 9.2689 40 1 8.7473 5.2123 5.8144 41 1 8.5578 3.7183 6.7634 42 1 9.7688 3.2788 4.6448 43 1 8.2021 2.4348 4.6719 44 1 8.3916 3.9287 3.7228 45 1 4.6630 2.9942 2.1315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157520573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:16 Heat of formation + Delta-G solvation = -35.099758 kcal Electronic energy + Delta-G solvation = -24527.999725 eV Core-core repulsion = 21056.428874 eV Total energy + Delta-G solvation = -3471.570851 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62586 -39.86864 -37.23331 -35.80235 -34.33677 -33.67433 -33.47827 -32.69961 -30.48995 -28.76621 -28.15459 -25.16314 -24.45697 -23.93235 -22.54017 -21.92622 -21.33704 -19.75781 -18.49362 -17.85317 -17.33611 -17.08652 -16.75895 -16.65838 -16.11489 -15.89717 -15.70548 -15.62334 -15.09268 -14.83900 -14.53524 -14.37439 -14.17732 -13.78644 -13.58813 -13.48491 -13.27126 -13.18747 -12.87019 -12.70405 -12.62052 -12.49745 -12.30698 -12.22019 -12.12653 -12.05563 -11.60711 -11.24360 -11.06601 -10.97195 -10.93745 -10.54032 -9.70375 -9.64513 -8.94850 -8.69434 -8.16310 -6.33338 0.04043 0.47464 1.00083 1.45026 1.45287 1.55750 1.63360 1.82495 2.25656 2.42372 2.97760 3.13404 3.43839 3.68177 3.87460 4.00865 4.06655 4.18042 4.28625 4.42734 4.49011 4.49670 4.50654 4.57006 4.66648 4.70659 4.77991 4.84227 4.89382 5.02445 5.08474 5.20144 5.22660 5.39135 5.43797 5.46152 5.54168 5.59563 5.60515 5.68468 5.76752 5.88015 6.13800 6.17188 6.30496 6.74630 7.26506 7.35228 7.73125 8.89176 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003012 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.788682 B = 9294.282442 C =10594.162064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 S -0.298 6.298 4 C -0.033 4.033 5 C -0.068 4.068 6 C -0.125 4.125 7 C -0.093 4.093 8 C -0.144 4.144 9 C 0.156 3.844 10 N -0.680 5.680 11 C 0.692 3.308 12 O -0.612 6.612 13 N -0.716 5.716 14 C 0.298 3.702 15 H -0.002 1.002 16 C -0.548 4.548 17 H 0.071 0.929 18 C 0.016 3.984 19 N -0.914 5.914 20 Si 0.970 3.030 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.129 4.129 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.420 0.580 38 H 0.401 0.599 39 H 0.265 0.735 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.023 0.977 44 H 0.040 0.960 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 1.083 -20.943 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.233 4.233 3 S -0.070 6.070 4 C -0.180 4.180 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.111 4.111 8 C -0.166 4.166 9 C 0.061 3.939 10 N -0.329 5.329 11 C 0.392 3.608 12 O -0.492 6.492 13 N -0.368 5.368 14 C 0.194 3.806 15 H 0.015 0.985 16 C -0.586 4.586 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.552 5.552 20 Si 0.795 3.205 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.160 4.160 25 C -0.176 4.176 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.165 0.835 35 H 0.181 0.819 36 H 0.170 0.830 37 H 0.258 0.742 38 H 0.236 0.764 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.372 0.762 -20.772 22.055 hybrid contribution 0.517 -0.295 1.555 1.665 sum -6.856 0.467 -19.217 20.408 Atomic orbital electron populations 1.21517 0.91276 1.03639 1.02761 1.23417 1.00899 0.93412 1.05622 1.87265 1.05898 1.15726 1.98158 1.22215 0.92514 0.97325 1.05973 1.19173 0.99257 0.95258 0.93319 1.21233 1.00027 0.96147 0.97094 1.21289 0.97076 0.94446 0.98324 1.21206 1.02747 1.02382 0.90219 1.17738 0.97003 0.93850 0.85344 1.42553 1.71477 1.10483 1.08416 1.16194 0.78082 0.85363 0.81115 1.90885 1.59320 1.14431 1.84566 1.45455 1.72190 1.11705 1.07475 1.18255 0.91411 0.89914 0.81042 0.98458 1.21561 1.38861 1.07266 0.90909 0.91046 1.25751 0.94713 0.95555 1.02381 1.70049 1.41273 1.18072 1.25832 0.85374 0.77727 0.79182 0.78218 1.20558 1.20919 1.18425 1.21800 0.97787 0.98224 0.98155 1.21630 0.98581 0.99165 0.98265 1.20943 0.99916 0.96270 0.98072 0.92756 0.91532 0.89010 0.88419 0.90269 0.86876 0.90703 0.83490 0.81903 0.83024 0.74236 0.76397 0.92583 0.93996 0.90911 0.93785 0.95738 0.94076 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.92 71.98 0.71 -1.24 16 2 C -0.09 -1.49 6.66 71.98 0.48 -1.01 16 3 S -0.30 -7.29 21.72 -56.49 -1.23 -8.52 16 4 C -0.03 -0.80 6.07 71.24 0.43 -0.37 16 5 C -0.07 -1.85 5.14 -19.88 -0.10 -1.96 16 6 C -0.12 -2.61 9.70 22.29 0.22 -2.39 16 7 C -0.09 -1.72 10.04 22.25 0.22 -1.49 16 8 C -0.14 -3.14 9.96 22.39 0.22 -2.92 16 9 C 0.16 4.69 6.28 38.15 0.24 4.93 16 10 N -0.68 -20.84 5.35 -317.17 -1.70 -22.54 16 11 C 0.69 28.20 6.87 179.05 1.23 29.43 16 12 O -0.61 -29.88 11.16 -3.99 -0.04 -29.93 16 13 N -0.72 -29.69 5.03 -461.42 -2.32 -32.01 16 14 C 0.30 15.31 2.24 44.25 0.10 15.41 16 15 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 16 C -0.55 -28.91 8.73 25.60 0.22 -28.69 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.02 0.87 5.29 84.66 0.45 1.32 16 19 N -0.91 -52.28 11.29 21.45 0.24 -52.03 16 20 Si 0.97 42.05 29.54 68.60 2.03 44.07 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 25 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16 26 C -0.13 -4.38 8.31 22.39 0.19 -4.20 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 2.09 8.09 -2.39 -0.02 2.07 16 33 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 37 H 0.42 9.47 8.83 -92.71 -0.82 8.65 16 38 H 0.40 13.89 8.56 -92.71 -0.79 13.10 16 39 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 40 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 4.03 5.95 -2.38 -0.01 4.02 16 42 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 44 H 0.04 1.85 5.64 -2.39 -0.01 1.84 16 45 H 0.10 4.15 6.41 -2.91 -0.02 4.13 16 Total: -1.00 -69.83 378.77 1.76 -68.07 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -0.61 Total: 36.76 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.39 Total: -3.88 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -3.77 Total: -106.58 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.04 Total: -29.93 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: -7.29 SS G_CDS: -1.23 Total: -8.52 kcal Total: -69.83 1.76 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157520573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.974 kcal (2) G-P(sol) polarization free energy of solvation -69.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds