Wall clock time and date at job start Tue Mar 31 2020 13:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 H 1.09007 * 109.46427 * 55.00086 * 3 2 1 5 5 C 1.53001 * 109.47065 * 174.99654 * 3 2 1 6 6 N 1.46497 * 109.47036 * 294.99799 * 3 2 1 7 7 C 1.34777 * 119.99525 * 154.99621 * 6 3 2 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 3 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 3 10 10 N 1.46499 * 109.47257 * 180.27849 * 9 7 6 11 11 C 1.40008 * 120.00241 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.09569 * 0.02562 * 11 10 9 13 13 C 1.38296 * 120.00418 * 179.97438 * 12 11 10 14 14 C 1.38272 * 120.20128 * 0.02562 * 13 12 11 15 15 C 1.38246 * 120.19544 * 359.97438 * 14 13 12 16 16 C 1.38732 * 119.99816 * 359.73013 * 15 14 13 17 17 S 1.76192 * 120.10429 * 180.27634 * 16 15 14 18 18 C 1.81397 * 103.00273 * 0.26889 * 17 16 15 19 19 C 1.50697 * 109.47507 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99974 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00008 * 180.02562 * 19 18 17 22 22 N 1.31504 * 120.00187 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99645 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47446 * 59.99945 * 23 21 19 25 25 H 1.48499 * 109.47023 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47141 * 299.99567 * 23 21 19 27 27 H 1.09008 * 109.47295 * 60.00253 * 1 2 3 28 28 H 1.08995 * 109.47402 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47570 * 300.00116 * 1 2 3 30 30 H 1.09002 * 109.47208 * 240.00401 * 2 1 3 31 31 H 1.09003 * 109.47291 * 120.00237 * 2 1 3 32 32 H 1.09002 * 109.46839 * 60.00194 * 5 3 2 33 33 H 1.08998 * 109.46617 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.47371 * 300.00160 * 5 3 2 35 35 H 0.97000 * 120.00580 * 335.00367 * 6 3 2 36 36 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 37 37 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 38 38 H 0.97002 * 119.99778 * 0.02562 * 10 9 7 39 39 H 1.08000 * 120.00266 * 359.97438 * 12 11 10 40 40 H 1.07999 * 119.90172 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.90042 * 179.97438 * 14 13 12 42 42 H 1.08008 * 120.00072 * 179.97438 * 15 14 13 43 43 H 1.08997 * 109.47148 * 300.00689 * 18 17 16 44 44 H 1.09006 * 109.46772 * 60.00158 * 18 17 16 45 45 H 0.97003 * 120.00256 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4444 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2995 8 8 1.7326 4.1029 -0.3062 9 6 1.1329 4.1127 -2.5888 10 7 1.0698 5.5617 -2.3826 11 6 0.7236 6.4056 -3.4447 12 6 0.4396 5.8721 -4.6924 13 6 0.0973 6.7073 -5.7401 14 6 0.0375 8.0754 -5.5481 15 6 0.3191 8.6163 -4.3074 16 6 0.6574 7.7855 -3.2491 17 16 1.0097 8.4714 -1.6648 18 6 0.7900 10.2519 -1.9329 19 6 1.0610 10.9907 -0.6477 20 1 1.3382 10.4439 0.2414 21 6 0.9551 12.3648 -0.6069 22 7 0.6181 13.0308 -1.6896 23 14 1.2918 13.2806 0.9860 24 1 2.6854 13.0150 1.4247 25 1 1.1119 14.7382 0.7665 26 1 0.3464 12.8167 2.0330 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9994 0.9053 -0.7160 33 1 3.9280 2.4720 0.1263 34 1 3.8531 0.9570 1.0572 35 1 1.4870 1.5661 -2.0463 36 1 1.8728 3.8870 -3.3569 37 1 0.1562 3.7481 -2.9068 38 1 1.2686 5.9366 -1.5102 39 1 0.4856 4.8041 -4.8462 40 1 -0.1232 6.2900 -6.7115 41 1 -0.2299 8.7231 -6.3697 42 1 0.2718 9.6854 -4.1610 43 1 1.4847 10.5922 -2.7007 44 1 -0.2327 10.4472 -2.2560 45 1 0.5433 13.9975 -1.6609 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170982921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:19 Heat of formation + Delta-G solvation = -29.391398 kcal Electronic energy + Delta-G solvation = -23889.367659 eV Core-core repulsion = 20418.044341 eV Total energy + Delta-G solvation = -3471.323318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25326 -38.82054 -36.89156 -34.99431 -33.17645 -32.77794 -30.73671 -30.42813 -29.45953 -28.48662 -26.47190 -24.18088 -23.23211 -22.61584 -21.64282 -20.98099 -20.57493 -18.16109 -16.98354 -16.81502 -16.20104 -15.91468 -15.84458 -15.55253 -14.76919 -14.41585 -14.36567 -14.13408 -13.92640 -13.77252 -13.55022 -13.50548 -12.99903 -12.82403 -12.76485 -12.52351 -12.28824 -12.17737 -12.06235 -11.72008 -11.53971 -11.49995 -11.10146 -10.91940 -10.86663 -10.66274 -10.09315 -9.93100 -9.91610 -9.61673 -9.41241 -9.09786 -8.95538 -8.56377 -7.48656 -6.27783 -6.19850 -4.24694 1.74714 1.97355 2.38490 2.58126 2.74400 3.29479 3.32192 3.37011 3.62279 3.89753 4.21534 4.25260 4.35899 4.49163 4.59586 4.64619 5.03529 5.04480 5.12548 5.17490 5.18490 5.21721 5.24102 5.37108 5.40028 5.49529 5.52497 5.63705 5.70888 5.80872 5.88138 5.92108 6.02716 6.19008 6.30519 6.52593 6.73042 6.99019 7.05879 7.08337 7.09242 7.21016 7.58002 7.73838 7.92972 7.98356 8.01704 8.76305 9.38597 10.91424 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002869 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.556478 B = 9756.507159 C =11668.926191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.140 3.860 4 H 0.090 0.910 5 C -0.165 4.165 6 N -0.725 5.725 7 C 0.508 3.492 8 O -0.523 6.523 9 C 0.111 3.889 10 N -0.735 5.735 11 C 0.223 3.777 12 C -0.191 4.191 13 C -0.095 4.095 14 C -0.157 4.157 15 C -0.089 4.089 16 C -0.133 4.133 17 S -0.171 6.171 18 C 0.077 3.923 19 C -0.517 4.517 20 H 0.067 0.933 21 C 0.068 3.932 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.400 0.600 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.417 0.583 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.131 0.869 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -26.394 -4.497 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.035 3.965 4 H 0.108 0.892 5 C -0.223 4.223 6 N -0.378 5.378 7 C 0.294 3.706 8 O -0.398 6.398 9 C -0.018 4.018 10 N -0.372 5.372 11 C 0.116 3.884 12 C -0.216 4.216 13 C -0.117 4.117 14 C -0.179 4.179 15 C -0.114 4.114 16 C -0.250 4.250 17 S 0.075 5.925 18 C -0.070 4.070 19 C -0.556 4.556 20 H 0.086 0.914 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.257 0.743 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.138 -26.381 -2.720 26.546 hybrid contribution -0.206 1.019 -0.592 1.196 sum 0.932 -25.363 -3.312 25.595 Atomic orbital electron populations 1.21785 0.95209 1.01741 1.02440 1.21837 0.96638 0.95279 1.03085 1.21032 0.95055 0.93004 0.87376 0.89218 1.22192 0.95224 1.02950 1.01982 1.45984 1.71326 1.06670 1.13840 1.20653 0.76920 0.82496 0.90566 1.90763 1.48919 1.63733 1.36358 1.20940 1.02392 0.83513 0.94953 1.44422 1.77572 1.02440 1.12726 1.17233 0.95398 0.87945 0.87866 1.20394 1.10142 0.99050 0.92002 1.20741 0.99765 0.93407 0.97760 1.20808 1.05103 0.94994 0.96965 1.21192 0.98305 0.99862 0.92077 1.21524 1.09533 0.94070 0.99843 1.85172 1.85879 1.12297 1.09195 1.21312 1.00468 0.83859 1.01378 1.20607 1.48737 0.91323 0.94983 0.91446 1.24941 0.94576 0.97011 0.97136 1.69935 1.46820 1.08153 1.27917 0.86396 0.79154 0.78257 0.82776 1.19865 1.21014 1.19854 0.92517 0.92517 0.92446 0.91379 0.90325 0.92475 0.91801 0.91584 0.76573 0.89577 0.89594 0.74286 0.86615 0.86692 0.86606 0.85134 0.93924 0.93919 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.80 37.15 0.36 -0.47 16 2 C -0.13 -0.65 5.47 -26.73 -0.15 -0.80 16 3 C 0.14 1.06 2.57 -67.93 -0.17 0.88 16 4 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 5 C -0.17 -1.25 9.48 37.16 0.35 -0.90 16 6 N -0.72 -5.47 4.53 -53.80 -0.24 -5.71 16 7 C 0.51 5.85 7.86 -10.98 -0.09 5.77 16 8 O -0.52 -8.53 15.33 5.55 0.09 -8.44 16 9 C 0.11 1.19 5.40 -5.19 -0.03 1.16 16 10 N -0.74 -11.64 5.66 -59.62 -0.34 -11.97 16 11 C 0.22 3.83 6.66 -83.50 -0.56 3.28 16 12 C -0.19 -2.71 9.31 -39.41 -0.37 -3.08 16 13 C -0.09 -1.32 10.04 -39.55 -0.40 -1.72 16 14 C -0.16 -2.51 10.04 -39.57 -0.40 -2.90 16 15 C -0.09 -1.72 9.36 -39.40 -0.37 -2.09 16 16 C -0.13 -2.68 6.12 -38.92 -0.24 -2.92 16 17 S -0.17 -3.94 20.37 -107.50 -2.19 -6.13 16 18 C 0.08 2.03 4.09 36.00 0.15 2.18 16 19 C -0.52 -14.78 9.13 -34.44 -0.31 -15.10 16 20 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 21 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 22 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 23 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.06 0.31 7.75 -51.92 -0.40 -0.09 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.40 1.77 8.60 -40.82 -0.35 1.42 16 36 H 0.09 0.74 7.95 -51.92 -0.41 0.33 16 37 H 0.09 0.74 7.95 -51.93 -0.41 0.33 16 38 H 0.42 7.67 5.98 -40.82 -0.24 7.42 16 39 H 0.12 1.25 6.74 -52.49 -0.35 0.89 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.13 2.71 5.88 -52.48 -0.31 2.40 16 43 H 0.04 1.17 7.74 -51.93 -0.40 0.77 16 44 H 0.04 1.17 7.76 -51.92 -0.40 0.77 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -32.84 383.90 -10.52 -43.36 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.03 Total: 6.64 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.31 Total: -14.90 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.16 Total: -42.93 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.19 Total: -6.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.84 -10.52 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170982921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.968 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds