Wall clock time and date at job start Tue Mar 31 2020 13:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 H 1.09007 * 109.46427 * 55.00086 * 3 2 1 5 5 C 1.53001 * 109.47065 * 174.99654 * 3 2 1 6 6 N 1.46497 * 109.47036 * 294.99799 * 3 2 1 7 7 C 1.34777 * 119.99525 * 154.99621 * 6 3 2 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 3 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 3 10 10 N 1.46499 * 109.47257 * 180.27849 * 9 7 6 11 11 C 1.40008 * 120.00241 * 179.97438 * 10 9 7 12 12 C 1.38634 * 120.09569 * 0.02562 * 11 10 9 13 13 C 1.38296 * 120.00418 * 179.97438 * 12 11 10 14 14 C 1.38272 * 120.20128 * 0.02562 * 13 12 11 15 15 C 1.38246 * 120.19544 * 359.97438 * 14 13 12 16 16 C 1.38732 * 119.99816 * 359.73013 * 15 14 13 17 17 S 1.76192 * 120.10429 * 180.27634 * 16 15 14 18 18 C 1.81397 * 103.00273 * 0.26889 * 17 16 15 19 19 C 1.50697 * 109.47507 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99974 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00008 * 180.02562 * 19 18 17 22 22 N 1.31504 * 120.00187 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99645 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47446 * 59.99945 * 23 21 19 25 25 H 1.48499 * 109.47023 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47141 * 299.99567 * 23 21 19 27 27 H 1.09008 * 109.47295 * 60.00253 * 1 2 3 28 28 H 1.08995 * 109.47402 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47570 * 300.00116 * 1 2 3 30 30 H 1.09002 * 109.47208 * 240.00401 * 2 1 3 31 31 H 1.09003 * 109.47291 * 120.00237 * 2 1 3 32 32 H 1.09002 * 109.46839 * 60.00194 * 5 3 2 33 33 H 1.08998 * 109.46617 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.47371 * 300.00160 * 5 3 2 35 35 H 0.97000 * 120.00580 * 335.00367 * 6 3 2 36 36 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 37 37 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 38 38 H 0.97002 * 119.99778 * 0.02562 * 10 9 7 39 39 H 1.08000 * 120.00266 * 359.97438 * 12 11 10 40 40 H 1.07999 * 119.90172 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.90042 * 179.97438 * 14 13 12 42 42 H 1.08008 * 120.00072 * 179.97438 * 15 14 13 43 43 H 1.08997 * 109.47148 * 300.00689 * 18 17 16 44 44 H 1.09006 * 109.46772 * 60.00158 * 18 17 16 45 45 H 0.97003 * 120.00256 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4444 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2995 8 8 1.7326 4.1029 -0.3062 9 6 1.1329 4.1127 -2.5888 10 7 1.0698 5.5617 -2.3826 11 6 0.7236 6.4056 -3.4447 12 6 0.4396 5.8721 -4.6924 13 6 0.0973 6.7073 -5.7401 14 6 0.0375 8.0754 -5.5481 15 6 0.3191 8.6163 -4.3074 16 6 0.6574 7.7855 -3.2491 17 16 1.0097 8.4714 -1.6648 18 6 0.7900 10.2519 -1.9329 19 6 1.0610 10.9907 -0.6477 20 1 1.3382 10.4439 0.2414 21 6 0.9551 12.3648 -0.6069 22 7 0.6181 13.0308 -1.6896 23 14 1.2918 13.2806 0.9860 24 1 2.6854 13.0150 1.4247 25 1 1.1119 14.7382 0.7665 26 1 0.3464 12.8167 2.0330 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9994 0.9053 -0.7160 33 1 3.9280 2.4720 0.1263 34 1 3.8531 0.9570 1.0572 35 1 1.4870 1.5661 -2.0463 36 1 1.8728 3.8870 -3.3569 37 1 0.1562 3.7481 -2.9068 38 1 1.2686 5.9366 -1.5102 39 1 0.4856 4.8041 -4.8462 40 1 -0.1232 6.2900 -6.7115 41 1 -0.2299 8.7231 -6.3697 42 1 0.2718 9.6854 -4.1610 43 1 1.4847 10.5922 -2.7007 44 1 -0.2327 10.4472 -2.2560 45 1 0.5433 13.9975 -1.6609 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170982921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:18 Heat of formation + Delta-G solvation = -50.427603 kcal Electronic energy + Delta-G solvation = -23890.279858 eV Core-core repulsion = 20418.044341 eV Total energy + Delta-G solvation = -3472.235517 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15659 -40.03853 -37.63954 -36.16195 -35.35267 -33.48257 -32.03906 -31.26081 -30.66010 -30.32028 -27.51830 -25.37349 -24.71014 -23.84032 -22.68362 -21.79073 -21.50803 -19.41478 -18.56270 -17.92861 -17.67004 -17.14622 -16.88948 -16.67768 -16.37773 -15.59217 -15.23956 -15.05782 -14.94026 -14.72121 -14.70313 -14.60694 -14.35690 -14.31554 -14.26616 -13.99386 -13.50385 -13.21964 -12.98432 -12.77095 -12.68020 -12.61811 -12.30364 -12.27790 -11.96882 -11.71241 -11.63914 -11.60194 -11.09991 -11.04092 -10.86059 -10.84529 -10.42021 -10.15976 -8.84395 -8.38184 -7.89875 -6.52937 0.42986 0.69478 0.91453 1.36471 1.40279 1.49311 1.51136 1.88386 1.93514 2.32993 2.66282 2.93280 2.96010 3.64363 3.81965 3.97576 4.06934 4.18474 4.23887 4.31294 4.40014 4.48645 4.50967 4.58342 4.62394 4.74491 4.74733 4.84199 4.84391 4.85418 4.98298 5.02894 5.13050 5.16522 5.26222 5.27363 5.41863 5.48343 5.50966 5.52868 5.71421 5.81030 5.94731 6.33653 6.51910 6.53395 6.65072 7.15287 7.18844 8.73969 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002869 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.556478 B = 9756.507159 C =11668.926191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C 0.137 3.863 4 H 0.058 0.942 5 C -0.161 4.161 6 N -0.702 5.702 7 C 0.505 3.495 8 O -0.582 6.582 9 C 0.107 3.893 10 N -0.747 5.747 11 C 0.221 3.779 12 C -0.179 4.179 13 C -0.072 4.072 14 C -0.165 4.165 15 C -0.111 4.111 16 C -0.171 4.171 17 S -0.191 6.191 18 C 0.091 3.909 19 C -0.545 4.545 20 H 0.062 0.938 21 C 0.018 3.982 22 N -0.921 5.921 23 Si 0.979 3.021 24 H -0.266 1.266 25 H -0.272 1.272 26 H -0.266 1.266 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.400 0.600 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.097 0.903 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -30.007 -6.420 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.219 4.219 6 N -0.356 5.356 7 C 0.291 3.709 8 O -0.461 6.461 9 C -0.020 4.020 10 N -0.380 5.380 11 C 0.113 3.887 12 C -0.203 4.203 13 C -0.093 4.093 14 C -0.186 4.186 15 C -0.135 4.135 16 C -0.288 4.288 17 S 0.052 5.948 18 C -0.057 4.057 19 C -0.584 4.584 20 H 0.080 0.920 21 C -0.184 4.184 22 N -0.559 5.559 23 Si 0.801 3.199 24 H -0.191 1.191 25 H -0.196 1.196 26 H -0.191 1.191 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.258 0.742 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.237 0.763 39 H 0.182 0.818 40 H 0.182 0.818 41 H 0.154 0.846 42 H 0.115 0.885 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.012 -30.086 -4.711 30.470 hybrid contribution -0.194 1.937 -0.142 1.952 sum 0.817 -28.149 -4.854 28.576 Atomic orbital electron populations 1.21800 0.95534 1.02330 1.01637 1.21786 0.96192 0.93172 1.04633 1.21078 0.95051 0.94324 0.86319 0.92347 1.22152 0.95095 1.01193 1.03489 1.45825 1.69494 1.05532 1.14723 1.20926 0.76316 0.83435 0.90192 1.90754 1.51815 1.65192 1.38339 1.21310 1.05076 0.80468 0.95120 1.44656 1.77077 1.04589 1.11645 1.17485 0.94991 0.86708 0.89519 1.20935 1.07785 1.01534 0.90092 1.21307 0.96326 0.92055 0.99645 1.21090 1.04892 0.96875 0.95782 1.21096 1.00104 0.98412 0.93915 1.21489 1.13656 0.95840 0.97778 1.84895 1.87336 1.09378 1.13146 1.20865 0.98014 0.86873 0.99915 1.20939 1.49636 0.92357 0.95485 0.92023 1.25927 0.93779 0.97726 1.00954 1.70048 1.47093 1.08692 1.30083 0.85299 0.79269 0.77188 0.78118 1.19116 1.19624 1.19088 0.92439 0.91207 0.94200 0.89096 0.89467 0.90568 0.95128 0.90463 0.74214 0.86292 0.86306 0.76312 0.81771 0.81819 0.84572 0.88512 0.96487 0.96490 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.80 71.98 0.71 -0.66 16 2 C -0.12 -0.88 5.47 30.59 0.17 -0.71 16 3 C 0.14 1.92 2.57 44.99 0.12 2.04 16 4 H 0.06 1.22 7.58 -2.38 -0.02 1.20 16 5 C -0.16 -2.29 9.48 71.98 0.68 -1.60 16 6 N -0.70 -9.12 4.53 -442.52 -2.00 -11.12 16 7 C 0.50 11.11 7.86 87.66 0.69 11.80 16 8 O -0.58 -19.77 15.33 -3.04 -0.05 -19.81 16 9 C 0.11 1.96 5.40 85.63 0.46 2.43 16 10 N -0.75 -23.04 5.66 -342.54 -1.94 -24.98 16 11 C 0.22 7.33 6.66 38.24 0.25 7.58 16 12 C -0.18 -4.26 9.31 22.38 0.21 -4.06 16 13 C -0.07 -1.68 10.04 22.29 0.22 -1.45 16 14 C -0.16 -5.01 10.04 22.28 0.22 -4.78 16 15 C -0.11 -4.48 9.36 22.39 0.21 -4.27 16 16 C -0.17 -7.17 6.12 22.70 0.14 -7.03 16 17 S -0.19 -9.48 20.37 -56.49 -1.15 -10.63 16 18 C 0.09 5.24 4.09 71.24 0.29 5.53 16 19 C -0.55 -33.06 9.13 25.60 0.23 -32.83 16 20 H 0.06 3.72 7.71 -2.91 -0.02 3.69 16 21 C 0.02 1.03 5.46 84.66 0.46 1.49 16 22 N -0.92 -55.97 13.29 21.45 0.28 -55.68 16 23 Si 0.98 45.45 29.54 68.60 2.03 47.47 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H 0.06 0.48 7.75 -2.38 -0.02 0.47 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.42 2.08 8.60 -92.71 -0.80 1.28 16 36 H 0.12 1.46 7.95 -2.38 -0.02 1.44 16 37 H 0.12 1.45 7.95 -2.39 -0.02 1.43 16 38 H 0.40 15.25 5.98 -92.71 -0.55 14.70 16 39 H 0.16 2.33 6.74 -2.91 -0.02 2.31 16 40 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 42 H 0.10 4.46 5.88 -2.91 -0.02 4.44 16 43 H 0.02 1.03 7.74 -2.39 -0.02 1.01 16 44 H 0.02 1.03 7.76 -2.39 -0.02 1.01 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -79.68 383.90 1.89 -77.80 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.36 Total: 23.49 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 5.07 Total: -26.53 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -3.66 Total: -91.78 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.15 Total: -10.63 kcal Total: -79.68 1.89 -77.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170982921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.370 kcal (2) G-P(sol) polarization free energy of solvation -79.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds