Wall clock time and date at job start Tue Mar 31 2020 13:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46814 * 2 1 4 4 H 1.09000 * 109.79197 * 179.48435 * 3 2 1 5 5 C 1.52440 * 109.79762 * 58.61604 * 3 2 1 6 6 C 1.39129 * 123.57328 * 48.92792 * 5 3 2 7 7 C 1.32922 * 115.65014 * 179.64375 * 6 5 3 8 8 S 1.75716 * 109.59325 * 0.07652 * 7 6 5 9 9 C 1.34649 * 122.62483 * 228.84643 * 5 3 2 10 10 C 1.51401 * 125.09706 * 0.48493 * 9 5 3 11 11 C 1.53203 * 109.06666 * 341.93094 * 10 9 5 12 12 N 1.46969 * 109.79697 * 300.29128 * 3 2 1 13 13 C 1.34780 * 120.87622 * 344.37395 * 12 3 2 14 14 O 1.21580 * 119.99858 * 353.79816 * 13 12 3 15 15 N 1.34779 * 120.00010 * 173.78990 * 13 12 3 16 16 C 1.46494 * 119.99816 * 174.86306 * 15 13 12 17 17 C 1.53004 * 109.46914 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.46993 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47030 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00179 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99936 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99840 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47211 * 59.99379 * 23 21 19 25 25 H 1.48495 * 109.47366 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46789 * 299.99966 * 23 21 19 27 27 H 1.09002 * 109.47451 * 64.48573 * 1 2 3 28 28 H 1.09006 * 109.47331 * 184.48348 * 1 2 3 29 29 H 1.08999 * 109.47476 * 304.47665 * 1 2 3 30 30 H 1.08996 * 109.47114 * 239.99713 * 2 1 3 31 31 H 1.08996 * 109.46860 * 119.99757 * 2 1 3 32 32 H 1.07995 * 122.17461 * 359.61588 * 6 5 3 33 33 H 1.08002 * 125.20819 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.54099 * 101.81677 * 10 9 5 35 35 H 1.08999 * 109.53569 * 221.98287 * 10 9 5 36 36 H 1.08993 * 109.62463 * 285.81785 * 11 10 9 37 37 H 1.08994 * 109.62050 * 165.25804 * 11 10 9 38 38 H 0.96997 * 119.99966 * 354.86632 * 15 13 12 39 39 H 1.08996 * 109.47360 * 299.99735 * 16 15 13 40 40 H 1.09000 * 109.47577 * 60.00421 * 16 15 13 41 41 H 1.08999 * 109.47112 * 299.99755 * 17 16 15 42 42 H 1.08995 * 109.47463 * 60.00178 * 17 16 15 43 43 H 1.09003 * 109.47322 * 300.00078 * 18 17 16 44 44 H 1.09002 * 109.47291 * 59.99585 * 18 17 16 45 45 H 0.97000 * 119.99906 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4487 0.0092 5 6 1.5078 2.1783 1.2245 6 6 1.5771 1.6701 2.5178 7 6 1.0707 2.4478 3.4694 8 16 0.4499 3.9274 2.7531 9 6 0.9252 3.3898 1.1471 10 6 0.7096 4.1720 -0.1311 11 6 1.6292 3.6126 -1.2213 12 7 1.5482 2.1443 -1.1940 13 6 1.0417 1.4601 -2.2389 14 8 1.0898 0.2453 -2.2509 15 7 0.4817 2.1225 -3.2705 16 6 0.0331 1.3877 -4.4558 17 6 -0.5595 2.3684 -5.4697 18 6 -1.0287 1.6009 -6.7074 19 6 -1.6129 2.5668 -7.7058 20 1 -1.6467 3.6223 -7.4801 21 6 -2.1054 2.1027 -8.9072 22 7 -2.0647 0.8172 -9.1819 23 14 -2.8289 3.2999 -10.1451 24 1 -1.7945 4.2896 -10.5396 25 1 -3.2844 2.5550 -11.3463 26 1 -3.9827 4.0071 -9.5336 27 1 -0.3634 0.4426 -0.9274 28 1 -0.3634 -1.0246 0.0803 29 1 -0.3634 0.5817 0.8471 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0135 0.7063 2.7343 33 1 1.0441 2.2068 4.5219 34 1 -0.3295 4.0765 -0.4461 35 1 0.9433 5.2227 0.0407 36 1 2.6555 3.9262 -1.0309 37 1 1.3064 3.9789 -2.1958 38 1 0.3758 3.0858 -3.2281 39 1 0.8806 0.8697 -4.9045 40 1 -0.7257 0.6605 -4.1669 41 1 -1.4070 2.8868 -5.0213 42 1 0.1995 3.0953 -5.7586 43 1 -0.1814 1.0822 -7.1560 44 1 -1.7878 0.8742 -6.4182 45 1 -2.4107 0.4907 -10.0272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:04 Heat of formation + Delta-G solvation = 16.396342 kcal Electronic energy + Delta-G solvation = -25179.856828 eV Core-core repulsion = 21710.519015 eV Total energy + Delta-G solvation = -3469.337813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02526 -38.62488 -35.82876 -35.72993 -33.91588 -33.00037 -31.75957 -30.64047 -28.88699 -26.92432 -25.81422 -24.44014 -23.28814 -22.32976 -21.68485 -20.62902 -19.77267 -18.23920 -18.00650 -16.90513 -16.59719 -16.12618 -15.87978 -15.44863 -15.05248 -14.62057 -14.44495 -14.22477 -13.99674 -13.78176 -13.50519 -13.34382 -12.91727 -12.71595 -12.29240 -12.14630 -12.05857 -11.81424 -11.75909 -11.64274 -11.30197 -11.12059 -10.98887 -10.90201 -10.74218 -10.67299 -10.60975 -9.84862 -9.53741 -9.16917 -9.07775 -8.90150 -8.81716 -8.57535 -8.47871 -8.36790 -6.01577 -4.04747 0.73936 1.35350 1.72761 2.40893 2.63050 3.31178 3.31843 3.36778 3.38487 3.92945 4.31608 4.44258 4.50906 4.65268 4.85062 4.89161 5.03186 5.07364 5.16510 5.26793 5.34095 5.38015 5.46094 5.58881 5.67696 5.70034 5.81671 5.89514 5.90609 5.96916 6.14787 6.18675 6.22795 6.30926 6.42050 6.57448 6.62513 6.73605 6.86605 7.02654 7.04760 7.63715 7.76893 7.97219 8.06523 8.38121 8.75958 9.01748 9.59315 11.09670 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.002447 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.412306 B =11439.006476 C =12134.614048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.231 3.769 4 H 0.081 0.919 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.216 4.216 8 S 0.087 5.913 9 C -0.170 4.170 10 C -0.067 4.067 11 C 0.117 3.883 12 N -0.630 5.630 13 C 0.709 3.291 14 O -0.575 6.575 15 N -0.743 5.743 16 C 0.135 3.865 17 C -0.120 4.120 18 C 0.025 3.975 19 C -0.523 4.523 20 H 0.054 0.946 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.119 0.881 31 H 0.053 0.947 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.391 0.609 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.193 6.176 25.984 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.125 3.875 4 H 0.098 0.902 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.351 4.351 8 S 0.353 5.647 9 C -0.287 4.287 10 C -0.107 4.107 11 C -0.008 4.008 12 N -0.368 5.368 13 C 0.412 3.588 14 O -0.453 6.453 15 N -0.399 5.399 16 C 0.012 3.988 17 C -0.158 4.158 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.455 6.431 26.416 28.472 hybrid contribution 0.091 -0.028 -0.976 0.981 sum 8.547 6.402 25.440 27.590 Atomic orbital electron populations 1.21828 0.95403 1.00865 1.01440 1.22136 0.97425 0.93354 1.03600 1.19940 0.96715 0.91715 0.79172 0.90168 1.19896 1.02423 0.94555 0.95460 1.19904 1.02387 1.01292 0.91136 1.25318 1.08025 0.98435 1.03310 1.84188 1.61171 1.20513 0.98826 1.24595 1.06944 0.99355 0.97791 1.20710 1.01381 0.98404 0.90217 1.21605 1.00108 0.80304 0.98815 1.47249 1.66560 1.05913 1.17109 1.15802 0.78239 0.85288 0.79516 1.90827 1.63727 1.11433 1.79347 1.45666 1.65019 1.10794 1.18415 1.21507 0.98942 0.95136 0.83257 1.21885 0.99261 0.97972 0.96700 1.19016 0.96515 0.95435 0.90311 1.21165 1.39897 0.93741 1.01325 0.92737 1.25027 0.96029 0.95111 0.98278 1.69955 1.46468 1.12827 1.24005 0.86646 0.79521 0.81044 0.80705 1.20258 1.21275 1.20259 0.91714 0.93543 0.94456 0.86370 0.92887 0.84280 0.81877 0.89648 0.89379 0.90408 0.89194 0.77346 0.91990 0.91872 0.92851 0.92844 0.96269 0.96264 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.89 37.16 0.33 -1.54 16 2 C -0.13 -1.55 4.88 -26.73 -0.13 -1.68 16 3 C 0.23 2.51 3.46 -67.96 -0.23 2.27 16 4 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.11 -1.10 4.10 -104.70 -0.43 -1.53 16 6 C -0.12 -1.04 9.27 -41.09 -0.38 -1.42 16 7 C -0.22 -1.75 11.20 28.89 0.32 -1.42 16 8 S 0.09 0.74 23.31 -107.50 -2.51 -1.77 16 9 C -0.17 -1.61 6.39 -35.23 -0.23 -1.84 16 10 C -0.07 -0.53 6.43 -27.43 -0.18 -0.71 16 11 C 0.12 0.97 6.32 -3.62 -0.02 0.95 16 12 N -0.63 -7.23 2.79 -171.19 -0.48 -7.70 16 13 C 0.71 10.39 6.57 -86.91 -0.57 9.82 16 14 O -0.57 -10.09 11.02 5.30 0.06 -10.03 16 15 N -0.74 -10.53 5.42 -65.23 -0.35 -10.88 16 16 C 0.13 2.34 5.68 -4.04 -0.02 2.31 16 17 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 18 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 19 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 23 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.06 1.03 5.07 -51.93 -0.26 0.77 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.48 6.87 -51.93 -0.36 0.13 16 30 H 0.12 1.73 5.59 -52.62 -0.29 1.43 16 31 H 0.05 0.54 7.42 -51.93 -0.39 0.15 16 32 H 0.14 1.04 7.50 -52.49 -0.39 0.65 16 33 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.66 5.76 -51.93 -0.30 0.36 16 38 H 0.39 4.53 6.09 -40.82 -0.25 4.29 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -31.74 362.66 -11.18 -42.92 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.86 Total: 1.66 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.23 Total: -10.03 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.10 Total: -44.60 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.06 Total: -10.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.74 -11.18 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.316 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds