Wall clock time and date at job start Tue Mar 31 2020 13:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 H 1.08999 * 109.79041 * 55.81229 * 3 2 1 5 5 C 1.52442 * 109.80124 * 176.67718 * 3 2 1 6 6 C 1.39130 * 123.56927 * 287.98981 * 5 3 2 7 7 C 1.32929 * 115.64761 * 179.72998 * 6 5 3 8 8 S 1.75714 * 109.58940 * 0.06471 * 7 6 5 9 9 C 1.34641 * 122.62385 * 107.94767 * 5 3 2 10 10 C 1.51398 * 125.10033 * 0.52489 * 9 5 3 11 11 C 1.53677 * 109.04657 * 341.81326 * 10 9 5 12 12 N 1.46971 * 109.80188 * 295.00479 * 3 2 1 13 13 C 1.34779 * 120.87238 * 105.50469 * 12 3 2 14 14 O 1.21587 * 119.99321 * 184.95319 * 13 12 3 15 15 N 1.34773 * 120.00441 * 4.94595 * 13 12 3 16 16 C 1.46498 * 120.00160 * 174.90823 * 15 13 12 17 17 C 1.53003 * 109.46968 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46975 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47225 * 180.02562 * 18 17 16 20 20 H 1.08007 * 119.99864 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00319 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00333 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47361 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.46948 * 300.00031 * 23 21 19 26 26 H 1.48507 * 109.46755 * 59.99987 * 23 21 19 27 27 H 1.08998 * 109.46673 * 299.99834 * 1 2 3 28 28 H 1.09004 * 109.47201 * 59.99624 * 1 2 3 29 29 H 1.08993 * 109.46982 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46933 * 240.00878 * 2 1 3 31 31 H 1.08995 * 109.47307 * 120.00471 * 2 1 3 32 32 H 1.08001 * 122.17700 * 359.75335 * 6 5 3 33 33 H 1.07995 * 125.19968 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.53594 * 101.79686 * 10 9 5 35 35 H 1.08994 * 109.53927 * 221.95834 * 10 9 5 36 36 H 1.09004 * 109.74072 * 286.04229 * 11 10 9 37 37 H 1.09000 * 109.75647 * 165.33694 * 11 10 9 38 38 H 0.97003 * 119.99458 * 354.91239 * 15 13 12 39 39 H 1.08999 * 109.46762 * 60.00563 * 16 15 13 40 40 H 1.09002 * 109.47224 * 300.00340 * 16 15 13 41 41 H 1.09000 * 109.46761 * 60.00151 * 17 16 15 42 42 H 1.08997 * 109.46874 * 299.99769 * 17 16 15 43 43 H 1.09004 * 109.47026 * 59.99720 * 18 17 16 44 44 H 1.09002 * 109.47043 * 299.99955 * 18 17 16 45 45 H 0.97000 * 119.99851 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6197 1.9826 0.8484 5 6 3.5622 1.4521 0.0831 6 6 4.2719 1.1203 1.2328 7 6 5.5959 1.1763 1.1280 8 16 6.0375 1.6744 -0.4982 9 6 4.3441 1.7852 -0.9611 10 6 3.8414 2.1983 -2.3282 11 6 2.3798 1.7492 -2.4819 12 7 1.6549 2.1068 -1.2532 13 6 0.6600 3.0157 -1.2768 14 8 0.2939 3.4888 -2.3353 15 7 0.0708 3.3999 -0.1272 16 6 -0.9322 4.4676 -0.1393 17 6 -1.4389 4.7076 1.2843 18 6 -2.4869 5.8222 1.2715 19 6 -2.9855 6.0590 2.6737 20 1 -2.5944 5.4728 3.4921 21 6 -3.9418 7.0233 2.9117 22 7 -4.4185 7.7368 1.9151 23 14 -4.5604 7.3164 4.6498 24 1 -5.5775 8.3983 4.6374 25 1 -5.1707 6.0686 5.1749 26 1 -3.4242 7.7156 5.5188 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.7793 0.8353 2.1507 33 1 6.2933 0.9508 1.9211 34 1 3.9041 3.2820 -2.4274 35 1 4.4507 1.7259 -3.0987 36 1 2.3398 0.6700 -2.6296 37 1 1.9267 2.2550 -3.3345 38 1 0.3109 2.9694 0.7083 39 1 -1.7660 4.1755 -0.7777 40 1 -0.4834 5.3834 -0.5241 41 1 -0.6049 4.9998 1.9223 42 1 -1.8876 3.7919 1.6694 43 1 -3.3208 5.5296 0.6334 44 1 -2.0386 6.7380 0.8862 45 1 -4.0975 7.5844 1.0125 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:11 Heat of formation + Delta-G solvation = -13.362366 kcal Electronic energy + Delta-G solvation = -25075.005186 eV Core-core repulsion = 21604.376939 eV Total energy + Delta-G solvation = -3470.628247 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82646 -38.70725 -36.02430 -35.52306 -34.15040 -33.38428 -31.78660 -30.71094 -29.27539 -26.82217 -25.68634 -24.13014 -23.15400 -22.37535 -22.02865 -20.86234 -19.80438 -18.52768 -18.22863 -16.90369 -16.83574 -16.35528 -15.85357 -15.34684 -15.03754 -14.42393 -14.39160 -14.24298 -13.87726 -13.72921 -13.66121 -13.41094 -13.32064 -12.93228 -12.71917 -12.27254 -12.06458 -11.88594 -11.75426 -11.66793 -11.55319 -11.45055 -11.13706 -10.95214 -10.81749 -10.78809 -10.22086 -10.10057 -9.99885 -9.78026 -9.04795 -8.87042 -8.67215 -8.56982 -8.54891 -8.32868 -6.36035 -4.05728 0.68118 1.29276 1.67198 2.32347 2.57750 3.26242 3.43504 3.45556 3.64453 3.89222 4.24983 4.37710 4.54677 4.59638 4.68101 4.80825 4.90487 4.98753 5.02609 5.17444 5.24356 5.33501 5.41144 5.46188 5.51096 5.62375 5.67046 5.71318 5.72122 5.74734 5.83871 5.94059 6.05915 6.07646 6.16030 6.31644 6.44438 6.50602 6.71972 6.88366 6.96249 7.37275 7.49939 7.99537 8.19352 8.45457 8.66287 8.88026 9.66823 11.04766 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.002633 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.305939 B =10632.306768 C =11096.885005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.207 3.793 4 H 0.096 0.904 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.215 4.215 8 S 0.093 5.907 9 C -0.161 4.161 10 C -0.067 4.067 11 C 0.135 3.865 12 N -0.627 5.627 13 C 0.710 3.290 14 O -0.589 6.589 15 N -0.740 5.740 16 C 0.134 3.866 17 C -0.113 4.113 18 C 0.012 3.988 19 C -0.603 4.603 20 H 0.048 0.952 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 1.069 2.931 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.288 1.288 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.392 0.608 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.492 -18.812 -4.894 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.099 3.901 4 H 0.113 0.887 5 C -0.133 4.133 6 C -0.151 4.151 7 C -0.350 4.350 8 S 0.359 5.641 9 C -0.278 4.278 10 C -0.107 4.107 11 C 0.010 3.990 12 N -0.364 5.364 13 C 0.412 3.588 14 O -0.468 6.468 15 N -0.396 5.396 16 C 0.011 3.989 17 C -0.151 4.151 18 C -0.026 4.026 19 C -0.642 4.642 20 H 0.067 0.933 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.897 3.103 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.215 1.215 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.228 0.772 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.579 -17.233 -5.500 28.158 hybrid contribution 0.134 -1.435 0.463 1.514 sum 21.713 -18.668 -5.036 29.075 Atomic orbital electron populations 1.21783 0.94735 1.02088 1.02543 1.21861 0.96654 0.95024 1.02991 1.20061 0.88762 0.94033 0.87197 0.88656 1.19713 0.95934 1.04581 0.93032 1.19918 0.93186 1.02892 0.99057 1.25330 0.99235 1.10085 1.00321 1.84219 1.06035 1.67389 1.06432 1.24714 0.95303 1.07627 1.00167 1.20819 0.96603 1.02203 0.91062 1.21500 0.89449 1.00346 0.87690 1.47272 1.36713 1.43601 1.08840 1.15803 0.79249 0.79114 0.84632 1.90908 1.66473 1.59820 1.29560 1.45521 1.44698 1.41326 1.08090 1.21513 0.89665 0.88323 0.99435 1.21747 0.99780 1.00890 0.92692 1.19144 0.92946 0.92557 0.97944 1.22013 1.26073 1.22902 0.93185 0.93327 1.25859 0.94393 0.93173 1.05549 1.70775 1.42954 1.39962 1.01117 0.83543 0.76340 0.76316 0.74063 1.20751 1.21457 1.21468 0.92370 0.92354 0.92277 0.91268 0.90550 0.84144 0.81730 0.89590 0.89420 0.91004 0.87795 0.77213 0.91868 0.92111 0.92672 0.92605 0.97140 0.97187 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.71 37.16 0.36 -1.05 16 2 C -0.13 -1.02 5.51 -26.73 -0.15 -1.17 16 3 C 0.21 1.99 2.49 -67.96 -0.17 1.82 16 4 H 0.10 0.91 5.78 -51.93 -0.30 0.61 16 5 C -0.12 -1.14 5.16 -104.70 -0.54 -1.68 16 6 C -0.12 -1.00 9.99 -41.09 -0.41 -1.41 16 7 C -0.21 -1.67 11.20 28.90 0.32 -1.34 16 8 S 0.09 0.77 23.31 -107.50 -2.51 -1.73 16 9 C -0.16 -1.53 6.39 -35.24 -0.23 -1.75 16 10 C -0.07 -0.58 6.44 -27.19 -0.18 -0.76 16 11 C 0.14 1.35 6.30 -3.38 -0.02 1.32 16 12 N -0.63 -7.39 2.17 -170.90 -0.37 -7.76 16 13 C 0.71 11.06 7.57 -86.92 -0.66 10.40 16 14 O -0.59 -11.42 15.79 5.29 0.08 -11.34 16 15 N -0.74 -11.13 5.46 -65.22 -0.36 -11.48 16 16 C 0.13 2.41 5.68 -4.04 -0.02 2.39 16 17 C -0.11 -2.25 5.27 -26.73 -0.14 -2.39 16 18 C 0.01 0.30 4.28 -27.89 -0.12 0.18 16 19 C -0.60 -17.13 9.11 -34.44 -0.31 -17.45 16 20 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 21 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 22 N -0.91 -28.20 13.65 55.43 0.76 -27.44 16 23 Si 1.07 25.26 29.90 -169.99 -5.08 20.18 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.66 7.21 -51.93 -0.37 0.28 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.56 7.23 -51.93 -0.38 0.19 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.60 7.26 -51.93 -0.38 0.22 16 37 H 0.10 1.16 7.01 -51.93 -0.36 0.80 16 38 H 0.39 4.98 6.03 -40.82 -0.25 4.74 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 44 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 16 45 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -33.58 373.07 -11.23 -44.81 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.02 Total: 1.72 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.36 Total: -12.58 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.03 Total: -46.68 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.58 -11.23 -44.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.447 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds