Wall clock time and date at job start Tue Mar 31 2020 13:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 N 1.46503 * 109.47150 * 179.97438 * 3 2 1 5 5 C 1.36931 * 119.99991 * 273.95936 * 4 3 2 6 6 H 1.08003 * 119.99955 * 318.49235 * 5 4 3 7 7 C 1.38817 * 120.00313 * 138.50426 * 5 4 3 8 8 N 1.31618 * 119.99548 * 341.67094 * 7 5 4 9 9 Si 1.86797 * 120.00038 * 161.66798 * 7 5 4 10 10 H 1.48493 * 109.47072 * 60.00165 * 9 7 5 11 11 H 1.48503 * 109.46756 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47356 * 299.99585 * 9 7 5 13 13 C 1.46497 * 119.99626 * 93.95493 * 4 3 2 14 14 C 1.50698 * 109.47057 * 89.99961 * 13 4 3 15 15 C 1.38290 * 119.92411 * 89.99983 * 14 13 4 16 16 C 1.38109 * 120.06836 * 179.97438 * 15 14 13 17 17 C 1.38890 * 119.92572 * 359.97438 * 16 15 14 18 18 S 1.76204 * 120.06822 * 180.02562 * 17 16 15 19 19 C 1.76198 * 100.00201 * 93.76291 * 18 17 16 20 20 O 1.21620 * 119.99678 * 354.48155 * 19 18 17 21 21 N 1.34771 * 120.00154 * 174.48369 * 19 18 17 22 22 C 1.46500 * 119.99917 * 180.02562 * 21 19 18 23 23 C 1.46502 * 120.00223 * 0.02562 * 21 19 18 24 24 C 1.38886 * 119.85960 * 0.27769 * 17 16 15 25 25 C 1.38100 * 119.92891 * 359.46480 * 24 17 16 26 26 H 1.09000 * 109.46664 * 59.99297 * 1 2 3 27 27 H 1.08994 * 109.46978 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46710 * 300.00095 * 1 2 3 29 29 H 1.08998 * 109.46750 * 240.00443 * 2 1 3 30 30 H 1.09000 * 109.46664 * 120.00703 * 2 1 3 31 31 H 1.09009 * 109.46547 * 60.00148 * 3 2 1 32 32 H 1.08998 * 109.47170 * 300.00253 * 3 2 1 33 33 H 0.97001 * 119.99875 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47406 * 330.00016 * 13 4 3 35 35 H 1.09003 * 109.47153 * 210.00035 * 13 4 3 36 36 H 1.07999 * 119.97070 * 0.02620 * 15 14 13 37 37 H 1.08005 * 120.03096 * 179.97438 * 16 15 14 38 38 H 1.08998 * 109.47438 * 89.99824 * 22 21 19 39 39 H 1.09006 * 109.46908 * 210.00071 * 22 21 19 40 40 H 1.09000 * 109.47546 * 329.99485 * 22 21 19 41 41 H 1.09000 * 109.47170 * 89.99781 * 23 21 19 42 42 H 1.08994 * 109.47132 * 210.00380 * 23 21 19 43 43 H 1.09006 * 109.46956 * 330.00164 * 23 21 19 44 44 H 1.08004 * 120.03789 * 179.72387 * 24 17 16 45 45 H 1.07998 * 119.96708 * 180.23154 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1893 1.3607 1.1839 6 1 3.8523 1.9228 2.0424 7 6 5.3161 0.5557 1.2801 8 7 5.5273 -0.3897 0.3891 9 14 6.5324 0.8143 2.6740 10 1 5.8426 0.6226 3.9749 11 1 7.6404 -0.1671 2.5525 12 1 7.0812 2.1923 2.6029 13 6 4.2381 1.5298 -1.2648 14 6 4.4893 2.9771 -1.6009 15 6 5.6421 3.5985 -1.1566 16 6 5.8757 4.9246 -1.4633 17 6 4.9515 5.6341 -2.2194 18 16 5.2460 7.3261 -2.6135 19 6 6.0158 7.1440 -4.1879 20 8 6.2749 6.0345 -4.6135 21 7 6.3175 8.2342 -4.9206 22 6 6.9570 8.0828 -6.2300 23 6 6.0059 9.5707 -4.4078 24 6 3.7923 5.0086 -2.6596 25 6 3.5672 3.6807 -2.3540 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 6.3145 -0.9525 0.4565 34 1 3.6493 1.0694 -2.0583 35 1 5.1904 1.0081 -1.1698 36 1 6.3610 3.0459 -0.5698 37 1 6.7760 5.4094 -1.1156 38 1 6.1911 8.0009 -7.0012 39 1 7.5836 8.9518 -6.4309 40 1 7.5722 7.1830 -6.2320 41 1 6.8532 9.9464 -3.8342 42 1 5.8056 10.2425 -5.2424 43 1 5.1270 9.5175 -3.7652 44 1 3.0696 5.5588 -3.2440 45 1 2.6678 3.1927 -2.6992 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176884479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:45 Heat of formation + Delta-G solvation = 9.696644 kcal Electronic energy + Delta-G solvation = -24632.561292 eV Core-core repulsion = 21162.932958 eV Total energy + Delta-G solvation = -3469.628334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.48675 -38.69487 -36.06773 -35.74858 -32.93900 -31.62216 -30.46998 -29.95966 -28.65339 -26.63542 -25.87899 -25.52744 -22.42767 -22.16327 -21.62469 -20.80855 -19.81526 -18.17475 -16.94361 -16.65259 -16.29635 -16.02507 -15.10314 -14.77491 -14.47232 -14.30638 -14.19974 -13.83554 -13.43346 -13.32058 -13.27519 -12.96300 -12.93588 -12.88425 -12.75005 -12.43650 -12.15519 -11.90669 -11.44377 -11.34714 -10.97205 -10.87318 -10.81610 -10.69557 -10.36766 -10.28654 -10.02355 -9.94270 -9.70671 -9.60534 -9.05559 -8.55559 -8.40835 -8.31635 -8.11742 -6.59057 -5.86000 -3.46474 0.88538 1.90768 1.96660 2.28280 2.38593 3.14546 3.33354 3.39623 3.41914 4.25844 4.45494 4.74108 4.91826 5.00260 5.26803 5.29580 5.31378 5.35620 5.39459 5.52144 5.52880 5.78260 5.79660 5.87181 5.93846 6.04020 6.07972 6.16434 6.30004 6.33910 6.40042 6.54651 6.62115 6.69662 6.72373 6.76219 6.82206 6.95683 7.09283 7.26623 7.33850 7.47001 7.60972 7.68388 7.77802 8.49379 9.11848 9.71849 10.33601 11.14099 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.003239 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.732223 B = 8642.092768 C = 9698.650023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.150 3.850 4 N -0.573 5.573 5 C -0.259 4.259 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.882 5.882 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.172 3.828 14 C -0.033 4.033 15 C -0.109 4.109 16 C -0.059 4.059 17 C -0.146 4.146 18 S -0.059 6.059 19 C 0.497 3.503 20 O -0.514 6.514 21 N -0.611 5.611 22 C 0.088 3.912 23 C 0.075 3.925 24 C -0.063 4.063 25 C -0.132 4.132 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.257 0.743 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 16.512 -9.628 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.024 3.976 4 N -0.292 5.292 5 C -0.389 4.389 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.523 5.523 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.206 1.206 13 C 0.046 3.954 14 C -0.037 4.037 15 C -0.129 4.129 16 C -0.080 4.080 17 C -0.258 4.258 18 S 0.174 5.826 19 C 0.178 3.822 20 O -0.392 6.392 21 N -0.349 5.349 22 C -0.057 4.057 23 C -0.068 4.068 24 C -0.083 4.083 25 C -0.153 4.153 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.259 16.767 -9.249 19.191 hybrid contribution 0.992 -0.891 0.005 1.334 sum -0.267 15.876 -9.244 18.373 Atomic orbital electron populations 1.21764 0.97884 1.00289 1.00616 1.22036 0.92823 1.00632 1.02244 1.20953 0.84983 0.93522 0.98127 1.43676 0.99375 1.83817 1.02305 1.18958 1.08867 1.21013 0.90065 0.92434 1.25281 1.00886 0.94578 0.97507 1.69965 1.27778 1.17830 1.36681 0.86524 0.81032 0.77749 0.82447 1.20580 1.21491 1.20601 1.20059 1.00484 0.87425 0.87384 1.21543 0.91535 1.00609 0.89969 1.21121 0.98283 0.93648 0.99871 1.21313 0.97113 0.94249 0.95358 1.20982 1.00204 0.95869 1.08765 1.84645 1.72653 1.07796 1.17488 1.23078 0.82391 0.86235 0.90525 1.90899 1.54045 1.24029 1.70231 1.47775 1.61633 1.06158 1.19322 1.21686 0.97744 1.03142 0.83140 1.21869 1.01845 0.82839 1.00271 1.21194 0.95186 0.94756 0.97212 1.21036 0.99878 0.93592 1.00774 0.93734 0.93888 0.93466 0.92989 0.91790 0.94286 0.94791 0.93300 0.94402 0.88177 0.85470 0.86261 0.92557 0.90994 0.90405 0.91926 0.90433 0.90158 0.86509 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.70 6.24 -26.73 -0.17 -2.87 16 3 C 0.15 3.11 5.67 -4.04 -0.02 3.09 16 4 N -0.57 -13.71 2.38 -174.60 -0.42 -14.13 16 5 C -0.26 -6.81 9.44 -15.06 -0.14 -6.95 16 6 H 0.06 1.54 7.89 -52.48 -0.41 1.13 16 7 C 0.02 0.50 5.00 -17.43 -0.09 0.41 16 8 N -0.88 -24.29 11.56 55.49 0.64 -23.65 16 9 Si 0.89 20.94 29.59 -169.99 -5.03 15.91 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.17 3.94 5.39 -5.20 -0.03 3.91 16 14 C -0.03 -0.68 5.47 -104.58 -0.57 -1.25 16 15 C -0.11 -2.22 9.69 -39.61 -0.38 -2.61 16 16 C -0.06 -1.10 9.79 -39.39 -0.39 -1.49 16 17 C -0.15 -2.55 4.73 -39.10 -0.18 -2.74 16 18 S -0.06 -0.83 20.04 -107.50 -2.15 -2.99 16 19 C 0.50 7.42 7.90 54.05 0.43 7.85 16 20 O -0.51 -9.71 15.66 5.26 0.08 -9.63 16 21 N -0.61 -6.73 3.27 -193.52 -0.63 -7.36 16 22 C 0.09 0.78 10.44 59.85 0.62 1.41 16 23 C 0.08 0.54 10.22 59.85 0.61 1.15 16 24 C -0.06 -1.08 9.79 -39.39 -0.39 -1.47 16 25 C -0.13 -2.43 9.69 -39.61 -0.38 -2.81 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.04 0.81 8.07 -51.92 -0.42 0.39 16 32 H 0.03 0.64 8.04 -51.93 -0.42 0.23 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.04 0.82 8.01 -51.93 -0.42 0.41 16 35 H 0.10 2.57 5.64 -51.93 -0.29 2.28 16 36 H 0.13 2.71 8.06 -52.49 -0.42 2.29 16 37 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.08 0.83 7.42 -51.93 -0.39 0.45 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 43 H 0.08 0.59 6.58 -51.93 -0.34 0.25 16 44 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 45 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -30.61 388.54 -9.68 -40.28 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.31 Total: 2.00 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -0.71 Total: -6.29 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.41 Total: -45.15 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.15 Total: -2.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.61 -9.68 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176884479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.981 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds