Wall clock time and date at job start Tue Mar 31 2020 13:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 N 1.46499 * 109.46855 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00257 * 89.99871 * 4 3 2 6 6 O 1.21589 * 119.99828 * 186.39092 * 5 4 3 7 7 N 1.34774 * 119.99841 * 6.38450 * 5 4 3 8 8 C 1.40131 * 119.99803 * 173.50971 * 7 5 4 9 9 C 1.38691 * 120.07736 * 344.36739 * 8 7 5 10 10 C 1.38196 * 120.02224 * 180.23267 * 9 8 7 11 11 C 1.38546 * 120.17585 * 359.48687 * 10 9 8 12 12 F 1.35098 * 119.92638 * 180.27982 * 11 10 9 13 13 C 1.38344 * 120.14970 * 0.51379 * 11 10 9 14 14 C 1.38743 * 119.97554 * 359.73975 * 13 11 10 15 15 O 1.35783 * 120.08629 * 180.02562 * 14 13 11 16 16 C 1.34802 * 116.99886 * 5.66133 * 15 14 13 17 17 H 1.08003 * 120.00131 * 5.13036 * 16 15 14 18 18 C 1.38633 * 119.99966 * 185.11970 * 16 15 14 19 19 N 1.31578 * 120.00360 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47567 * 89.99442 * 20 18 16 22 22 H 1.48501 * 109.47363 * 209.99670 * 20 18 16 23 23 H 1.48506 * 109.46843 * 329.99435 * 20 18 16 24 24 C 1.46507 * 120.00031 * 269.99806 * 4 3 2 25 25 C 1.52998 * 117.49962 * 195.56796 * 24 4 3 26 26 C 1.52993 * 117.50212 * 126.90327 * 24 4 3 27 27 H 1.08996 * 109.46801 * 60.00334 * 1 2 3 28 28 H 1.08996 * 109.47247 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47498 * 300.00331 * 1 2 3 30 30 H 1.08995 * 109.47498 * 239.99669 * 2 1 3 31 31 H 1.09004 * 109.46976 * 119.99431 * 2 1 3 32 32 H 1.08995 * 109.47286 * 59.99539 * 3 2 1 33 33 H 1.08996 * 109.47091 * 299.99488 * 3 2 1 34 34 H 0.96998 * 120.00207 * 353.51200 * 7 5 4 35 35 H 1.07997 * 119.98754 * 359.95338 * 9 8 7 36 36 H 1.08004 * 119.91429 * 179.74431 * 10 9 8 37 37 H 1.08002 * 120.01576 * 179.76832 * 13 11 10 38 38 H 0.96996 * 119.99749 * 180.02562 * 19 18 16 39 39 H 1.09005 * 115.54388 * 341.23985 * 24 4 3 40 40 H 1.08995 * 117.50026 * 359.97438 * 25 24 4 41 41 H 1.09001 * 117.49921 * 145.02258 * 25 24 4 42 42 H 1.08993 * 117.50282 * 214.98275 * 26 24 4 43 43 H 1.09004 * 117.49950 * 359.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3897 1.3251 -1.1689 7 7 3.5124 1.5719 -2.3302 8 6 4.2201 1.7085 -3.5319 9 6 5.5680 2.0342 -3.5116 10 6 6.2637 2.1733 -4.6975 11 6 5.6209 1.9777 -5.9091 12 9 6.3072 2.1095 -7.0652 13 6 4.2765 1.6526 -5.9378 14 6 3.5707 1.5165 -4.7511 15 8 2.2513 1.1969 -4.7766 16 6 1.7142 0.9102 -5.9794 17 1 2.3453 0.8599 -6.8544 18 6 0.3519 0.6798 -6.0931 19 7 -0.1723 0.3995 -7.2669 20 14 -0.7396 0.7674 -4.5797 21 1 -1.2403 2.1551 -4.4099 22 1 -1.8900 -0.1571 -4.7449 23 1 0.0436 0.3736 -3.3810 24 6 4.2370 1.4427 1.2697 25 6 5.7224 1.8069 1.2284 26 6 5.2958 0.3576 1.4748 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.5424 1.5707 -2.3360 35 1 6.0731 2.1837 -2.5687 36 1 7.3124 2.4311 -4.6797 37 1 3.7766 1.5042 -6.8836 38 1 -1.1255 0.2387 -7.3464 39 1 3.6652 1.7592 2.1421 40 1 6.1552 2.0460 0.2570 41 1 6.1281 2.3626 2.0738 42 1 5.4210 -0.0395 2.4820 43 1 5.4476 -0.3568 0.6656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178149202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:35 Heat of formation + Delta-G solvation = -23.621252 kcal Electronic energy + Delta-G solvation = -27992.159932 eV Core-core repulsion = 23954.873650 eV Total energy + Delta-G solvation = -4037.286282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.24617 -40.94458 -39.25605 -37.27594 -36.09671 -35.88881 -33.83675 -32.51610 -32.18890 -29.55610 -28.39288 -26.21809 -25.44678 -23.56728 -22.37457 -22.20813 -21.82590 -21.37646 -19.71106 -18.39004 -18.09991 -17.49431 -17.05900 -16.01405 -15.63562 -15.44349 -15.28708 -14.98782 -14.73725 -14.65670 -14.15042 -14.08765 -13.91412 -13.69881 -13.43779 -13.29534 -12.95862 -12.52082 -12.43454 -12.26746 -11.98065 -11.82592 -11.77499 -11.63356 -11.28067 -11.02981 -11.00824 -10.87249 -10.75646 -10.46957 -10.35446 -9.86092 -9.71821 -9.21915 -9.01140 -8.48697 -7.94419 -7.13687 -6.55011 -4.21867 1.77613 2.03369 2.53359 3.06894 3.10287 3.14422 3.18107 3.78383 3.96915 4.06332 4.29536 4.54367 4.65471 4.80376 4.85433 4.92109 4.93428 5.01681 5.07384 5.12013 5.25811 5.39165 5.49905 5.52516 5.63462 5.71646 5.73494 5.85363 5.91035 6.00159 6.04214 6.06321 6.17681 6.32449 6.55352 6.57573 6.71924 6.83426 6.91124 7.01332 7.06866 7.47503 7.65541 7.87152 7.99972 8.62547 8.78036 9.33052 10.52395 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.006009 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.688144 B = 4658.607136 C = 7501.409654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.601 5.601 5 C 0.707 3.293 6 O -0.569 6.569 7 N -0.664 5.664 8 C 0.084 3.916 9 C -0.079 4.079 10 C -0.215 4.215 11 C 0.120 3.880 12 F -0.150 7.150 13 C -0.241 4.241 14 C 0.156 3.844 15 O -0.214 6.214 16 C -0.388 4.388 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.873 5.873 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.258 1.258 24 C 0.087 3.913 25 C -0.192 4.192 26 C -0.188 4.188 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.410 0.590 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.149 0.851 38 H 0.281 0.719 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 2.364 16.893 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C -0.014 4.014 4 N -0.335 5.335 5 C 0.411 3.589 6 O -0.449 6.449 7 N -0.310 5.310 8 C -0.011 4.011 9 C -0.099 4.099 10 C -0.235 4.235 11 C 0.100 3.900 12 F -0.129 7.129 13 C -0.262 4.262 14 C 0.102 3.898 15 O -0.119 6.119 16 C -0.464 4.464 17 H 0.126 0.874 18 C -0.139 4.139 19 N -0.510 5.510 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.018 4.018 25 C -0.229 4.229 26 C -0.227 4.227 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.247 0.753 35 H 0.184 0.816 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.071 2.227 16.929 17.554 hybrid contribution -1.148 -0.127 0.036 1.156 sum 2.923 2.101 16.965 17.342 Atomic orbital electron populations 1.21740 0.94939 1.02368 1.02055 1.21988 0.96373 0.96815 1.03183 1.21672 0.78915 0.97463 1.03339 1.46520 1.05863 1.77428 1.03720 1.15839 0.85060 0.77990 0.80036 1.90587 1.11882 1.57349 1.85066 1.42525 1.10272 1.74275 1.03945 1.16810 0.92180 1.10246 0.81829 1.21318 0.91652 0.97375 0.99573 1.20624 1.00588 1.11636 0.90637 1.17500 0.89883 1.01531 0.81104 1.91420 1.79678 1.93617 1.48170 1.20940 0.93262 1.12172 0.99791 1.18371 0.85081 0.95323 0.91009 1.83484 1.18223 1.76032 1.34193 1.20732 0.93332 1.48250 0.84053 0.87435 1.24461 0.95943 0.95708 0.97780 1.69644 1.13764 1.44834 1.22740 0.86260 0.79747 0.78572 0.82755 1.19765 1.20562 1.18186 1.21455 0.89219 1.05301 0.85777 1.23927 0.95648 0.97601 1.05728 1.23272 1.03897 0.93221 1.02286 0.92226 0.92215 0.92567 0.91347 0.91276 0.89752 0.90552 0.75299 0.81642 0.85802 0.83369 0.90859 0.85544 0.84121 0.89620 0.89101 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.14 -1.58 6.26 -26.73 -0.17 -1.74 16 3 C 0.11 1.16 5.31 -4.04 -0.02 1.14 16 4 N -0.60 -7.59 2.84 -171.80 -0.49 -8.07 16 5 C 0.71 11.32 7.94 -86.92 -0.69 10.63 16 6 O -0.57 -9.91 8.87 5.29 0.05 -9.86 16 7 N -0.66 -11.52 5.23 -14.07 -0.07 -11.59 16 8 C 0.08 1.66 6.57 -83.44 -0.55 1.11 16 9 C -0.08 -1.45 8.84 -39.43 -0.35 -1.80 16 10 C -0.21 -3.88 10.02 -39.48 -0.40 -4.28 16 11 C 0.12 2.38 7.29 -39.43 -0.29 2.09 16 12 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 13 C -0.24 -5.24 9.11 -39.36 -0.36 -5.59 16 14 C 0.16 3.45 6.66 -38.94 -0.26 3.19 16 15 O -0.21 -5.13 7.90 0.03 0.00 -5.13 16 16 C -0.39 -10.29 9.90 30.88 0.31 -9.99 16 17 H 0.11 2.98 5.52 -52.48 -0.29 2.69 16 18 C 0.07 1.72 5.49 -17.51 -0.10 1.62 16 19 N -0.87 -24.13 13.96 55.48 0.77 -23.35 16 20 Si 0.90 19.63 28.62 -169.99 -4.86 14.76 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 C 0.09 0.94 6.61 -67.93 -0.45 0.49 16 25 C -0.19 -2.20 9.63 -26.69 -0.26 -2.46 16 26 C -0.19 -2.10 9.89 -26.70 -0.26 -2.36 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 33 H 0.08 0.86 6.22 -51.93 -0.32 0.54 16 34 H 0.41 6.85 5.88 -40.82 -0.24 6.61 16 35 H 0.17 2.96 5.18 -52.61 -0.27 2.69 16 36 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 37 H 0.15 3.38 5.71 -52.49 -0.30 3.08 16 38 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.13 1.01 8.09 -51.93 -0.42 0.59 16 40 H 0.14 2.03 5.17 -52.16 -0.27 1.76 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 1.35 7.65 -51.93 -0.40 0.95 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -28.16 356.25 -8.11 -36.27 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -5.45 Total: 13.60 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -3.47 Total: -9.12 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.21 Total: -43.02 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.05 Total: -14.99 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.86 Total: 14.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.16 -8.11 -36.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178149202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.650 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds