Wall clock time and date at job start Tue Mar 31 2020 14:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 S 1.81398 * 109.47239 * 119.99709 * 2 1 3 5 5 C 1.76196 * 103.00423 * 171.78629 * 4 2 1 6 6 C 1.38776 * 120.10431 * 354.58287 * 5 4 2 7 7 C 1.38205 * 119.99392 * 179.97438 * 6 5 4 8 8 C 1.38290 * 120.19144 * 359.97438 * 7 6 5 9 9 C 1.38261 * 120.21078 * 0.02562 * 8 7 6 10 10 C 1.38635 * 120.00701 * 359.97438 * 9 8 7 11 11 N 1.40191 * 120.10005 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99831 * 23.61833 * 11 10 9 13 13 O 1.21596 * 120.00126 * 5.62749 * 12 11 10 14 14 N 1.34777 * 120.00276 * 185.63061 * 12 11 10 15 15 C 1.46499 * 120.00409 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47267 * 179.97438 * 15 14 12 17 17 C 1.53008 * 109.47082 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47098 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99884 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00143 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00354 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47103 * 90.00344 * 22 20 18 24 24 H 1.48498 * 109.47320 * 210.00436 * 22 20 18 25 25 H 1.48503 * 109.47288 * 330.00246 * 22 20 18 26 26 H 1.08997 * 109.47427 * 300.00073 * 1 2 3 27 27 H 1.09002 * 109.46960 * 60.00239 * 1 2 3 28 28 H 1.09007 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47546 * 239.99558 * 2 1 3 30 30 H 1.08996 * 109.46941 * 64.73758 * 3 2 1 31 31 H 1.09004 * 109.47024 * 184.73525 * 3 2 1 32 32 H 1.08996 * 109.47110 * 304.73303 * 3 2 1 33 33 H 1.08008 * 120.00250 * 359.97175 * 6 5 4 34 34 H 1.07993 * 119.90651 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.89829 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.00081 * 179.72507 * 9 8 7 37 37 H 0.96998 * 120.00714 * 203.62532 * 11 10 9 38 38 H 0.97002 * 119.99935 * 359.97438 * 14 12 11 39 39 H 1.08998 * 109.47173 * 300.00034 * 15 14 12 40 40 H 1.09009 * 109.47002 * 59.99376 * 15 14 12 41 41 H 1.08995 * 109.47321 * 299.99742 * 16 15 14 42 42 H 1.09000 * 109.46940 * 60.00298 * 16 15 14 43 43 H 1.08998 * 109.47529 * 300.00440 * 17 16 15 44 44 H 1.09000 * 109.46726 * 60.00490 * 17 16 15 45 45 H 0.97001 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8550 1.4811 5 6 3.8688 -0.9712 1.1917 6 6 4.4013 -0.5569 -0.0210 7 6 5.7620 -0.6485 -0.2454 8 6 6.5963 -1.1518 0.7359 9 6 6.0745 -1.5669 1.9471 10 6 4.7109 -1.4788 2.1812 11 7 4.1796 -1.8997 3.4084 12 6 4.9626 -1.9358 4.5048 13 8 6.0996 -1.5077 4.4543 14 7 4.4855 -2.4466 5.6572 15 6 5.3368 -2.4864 6.8488 16 6 4.5593 -3.1082 8.0105 17 6 5.4487 -3.1504 9.2548 18 6 4.6826 -3.7623 10.3993 19 1 3.6635 -4.0889 10.2536 20 6 5.2831 -3.9062 11.6320 21 7 6.5242 -3.5089 11.8093 22 14 4.3339 -4.6653 13.0504 23 1 4.5417 -6.1357 13.0545 24 1 4.8181 -4.0934 14.3325 25 1 2.8871 -4.3703 12.8920 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.7476 1.9312 0.9294 31 1 3.1267 1.4437 -0.0848 32 1 1.6090 1.9802 -0.8445 33 1 3.7525 -0.1629 -0.7894 34 1 6.1748 -0.3261 -1.1897 35 1 7.6589 -1.2209 0.5556 36 1 6.7286 -1.9636 2.7094 37 1 3.2486 -2.1650 3.4685 38 1 3.5784 -2.7878 5.6976 39 1 6.2233 -3.0860 6.6422 40 1 5.6376 -1.4729 7.1145 41 1 3.6731 -2.5082 8.2171 42 1 4.2583 -4.1216 7.7450 43 1 6.3347 -3.7505 9.0481 44 1 5.7500 -2.1371 9.5205 45 1 6.9466 -3.6098 12.6766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178171721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:57 Heat of formation + Delta-G solvation = -20.453848 kcal Electronic energy + Delta-G solvation = -23690.311941 eV Core-core repulsion = 20219.376184 eV Total energy + Delta-G solvation = -3470.935757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69104 -38.75863 -35.80546 -35.35117 -34.65950 -33.35135 -31.33397 -31.24955 -29.47217 -27.70514 -26.62104 -23.79453 -23.20094 -22.78401 -21.83291 -20.92068 -20.33718 -18.48549 -17.88516 -17.23195 -16.50610 -16.24029 -15.78579 -15.31599 -15.13711 -14.80632 -14.52970 -14.34502 -14.29395 -14.13567 -13.80927 -13.56515 -13.09927 -12.76917 -12.62014 -12.29665 -12.08001 -11.87303 -11.83709 -11.83393 -11.77205 -11.28790 -10.92201 -10.75253 -10.64013 -10.59419 -10.35790 -10.05029 -9.87767 -9.84819 -9.45734 -9.13696 -8.90361 -8.38416 -8.37473 -7.51457 -6.02222 -4.05338 0.99747 1.16119 1.20412 2.06424 2.59612 3.10190 3.30729 3.37164 3.39940 3.65842 4.16755 4.24403 4.32691 4.44376 4.57882 4.71432 4.85846 5.07647 5.08626 5.19381 5.24408 5.27251 5.33174 5.33599 5.34885 5.57866 5.61419 5.67957 5.72777 5.76806 6.00489 6.04621 6.14045 6.29501 6.36477 6.48055 6.58627 6.73557 6.85566 6.93579 6.99348 7.62840 7.75198 7.92390 7.96382 8.37023 8.52302 9.01225 9.58848 11.09040 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.002128 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.957352 B =13156.952158 C =14333.494669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 C -0.156 4.156 4 S -0.127 6.127 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.130 4.130 8 C -0.099 4.099 9 C -0.119 4.119 10 C 0.199 3.801 11 N -0.683 5.683 12 C 0.701 3.299 13 O -0.572 6.572 14 N -0.733 5.733 15 C 0.133 3.867 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.157 0.843 37 H 0.407 0.593 38 H 0.396 0.604 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 7.090 -29.267 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.204 4.204 3 C -0.215 4.215 4 S 0.115 5.885 5 C -0.239 4.239 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.120 4.120 9 C -0.141 4.141 10 C 0.097 3.903 11 N -0.329 5.329 12 C 0.401 3.599 13 O -0.449 6.449 14 N -0.387 5.387 15 C 0.011 3.989 16 C -0.159 4.159 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.174 0.826 37 H 0.243 0.757 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.185 7.084 -28.106 30.406 hybrid contribution -0.572 -0.268 -0.165 0.653 sum -9.757 6.817 -28.271 30.675 Atomic orbital electron populations 1.21623 0.91282 1.03228 1.03160 1.23329 0.99981 0.99153 0.97920 1.22231 1.02101 0.93873 1.03274 1.85234 0.99307 1.73958 1.29954 1.21256 0.96604 1.07877 0.98119 1.20959 0.96074 1.01531 0.95206 1.20982 0.92937 1.01609 0.99578 1.21138 0.99999 0.98080 0.92784 1.21557 0.93605 1.00737 0.98185 1.17056 0.92375 0.97066 0.83796 1.42775 1.14333 1.69064 1.06716 1.15969 0.84613 0.79188 0.80111 1.90881 1.17708 1.52562 1.83756 1.45446 1.18089 1.65059 1.10076 1.21606 0.93318 1.01711 0.82305 1.21905 0.99572 0.99306 0.95112 1.19029 0.94627 0.97650 0.90048 1.21193 0.99248 1.40476 0.95142 0.92644 1.25032 0.94958 0.95654 0.98862 1.69965 1.12167 1.47209 1.23894 0.86575 0.80122 0.79370 0.81805 1.20662 1.21206 1.19904 0.91437 0.90739 0.91441 0.88869 0.91117 0.91497 0.91497 0.85510 0.85886 0.85489 0.82593 0.75716 0.76989 0.91609 0.91633 0.92647 0.92659 0.96208 0.96203 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 9.20 37.15 0.34 -0.34 16 2 C -0.08 -0.48 2.60 -26.73 -0.07 -0.55 16 3 C -0.16 -0.96 8.76 37.16 0.33 -0.64 16 4 S -0.13 -1.17 20.01 -107.50 -2.15 -3.32 16 5 C -0.12 -1.36 6.06 -38.91 -0.24 -1.59 16 6 C -0.11 -1.07 8.02 -39.39 -0.32 -1.39 16 7 C -0.13 -1.19 10.04 -39.57 -0.40 -1.59 16 8 C -0.10 -1.05 10.04 -39.55 -0.40 -1.45 16 9 C -0.12 -1.58 8.73 -39.43 -0.34 -1.92 16 10 C 0.20 2.59 6.46 -83.42 -0.54 2.05 16 11 N -0.68 -8.70 5.20 -14.06 -0.07 -8.78 16 12 C 0.70 10.88 8.38 -86.92 -0.73 10.16 16 13 O -0.57 -10.77 13.45 5.28 0.07 -10.70 16 14 N -0.73 -10.61 5.56 -65.22 -0.36 -10.97 16 15 C 0.13 2.33 5.67 -4.04 -0.02 2.30 16 16 C -0.12 -2.33 5.27 -26.73 -0.14 -2.48 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.54 6.99 -51.92 -0.36 0.18 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.47 5.75 -51.93 -0.30 0.17 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.13 0.91 4.77 -52.48 -0.25 0.66 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.16 2.37 5.71 -52.49 -0.30 2.07 16 37 H 0.41 4.28 7.63 -40.82 -0.31 3.97 16 38 H 0.40 4.61 8.49 -40.82 -0.35 4.26 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -32.45 378.20 -11.08 -43.53 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.91 Total: 4.43 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.07 Total: -10.30 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.30 Total: -45.78 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.15 Total: -3.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.45 -11.08 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178171721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.073 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds