Wall clock time and date at job start Tue Mar 31 2020 14:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 S 1.81398 * 109.47239 * 119.99709 * 2 1 3 5 5 C 1.76196 * 103.00423 * 171.78629 * 4 2 1 6 6 C 1.38776 * 120.10431 * 354.58287 * 5 4 2 7 7 C 1.38205 * 119.99392 * 179.97438 * 6 5 4 8 8 C 1.38290 * 120.19144 * 359.97438 * 7 6 5 9 9 C 1.38261 * 120.21078 * 0.02562 * 8 7 6 10 10 C 1.38635 * 120.00701 * 359.97438 * 9 8 7 11 11 N 1.40191 * 120.10005 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99831 * 23.61833 * 11 10 9 13 13 O 1.21596 * 120.00126 * 5.62749 * 12 11 10 14 14 N 1.34777 * 120.00276 * 185.63061 * 12 11 10 15 15 C 1.46499 * 120.00409 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47267 * 179.97438 * 15 14 12 17 17 C 1.53008 * 109.47082 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47098 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99884 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00143 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99699 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00354 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47103 * 90.00344 * 22 20 18 24 24 H 1.48498 * 109.47320 * 210.00436 * 22 20 18 25 25 H 1.48503 * 109.47288 * 330.00246 * 22 20 18 26 26 H 1.08997 * 109.47427 * 300.00073 * 1 2 3 27 27 H 1.09002 * 109.46960 * 60.00239 * 1 2 3 28 28 H 1.09007 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47546 * 239.99558 * 2 1 3 30 30 H 1.08996 * 109.46941 * 64.73758 * 3 2 1 31 31 H 1.09004 * 109.47024 * 184.73525 * 3 2 1 32 32 H 1.08996 * 109.47110 * 304.73303 * 3 2 1 33 33 H 1.08008 * 120.00250 * 359.97175 * 6 5 4 34 34 H 1.07993 * 119.90651 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.89829 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.00081 * 179.72507 * 9 8 7 37 37 H 0.96998 * 120.00714 * 203.62532 * 11 10 9 38 38 H 0.97002 * 119.99935 * 359.97438 * 14 12 11 39 39 H 1.08998 * 109.47173 * 300.00034 * 15 14 12 40 40 H 1.09009 * 109.47002 * 59.99376 * 15 14 12 41 41 H 1.08995 * 109.47321 * 299.99742 * 16 15 14 42 42 H 1.09000 * 109.46940 * 60.00298 * 16 15 14 43 43 H 1.08998 * 109.47529 * 300.00440 * 17 16 15 44 44 H 1.09000 * 109.46726 * 60.00490 * 17 16 15 45 45 H 0.97001 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1346 -0.8550 1.4811 5 6 3.8688 -0.9712 1.1917 6 6 4.4013 -0.5569 -0.0210 7 6 5.7620 -0.6485 -0.2454 8 6 6.5963 -1.1518 0.7359 9 6 6.0745 -1.5669 1.9471 10 6 4.7109 -1.4788 2.1812 11 7 4.1796 -1.8997 3.4084 12 6 4.9626 -1.9358 4.5048 13 8 6.0996 -1.5077 4.4543 14 7 4.4855 -2.4466 5.6572 15 6 5.3368 -2.4864 6.8488 16 6 4.5593 -3.1082 8.0105 17 6 5.4487 -3.1504 9.2548 18 6 4.6826 -3.7623 10.3993 19 1 3.6635 -4.0889 10.2536 20 6 5.2831 -3.9062 11.6320 21 7 6.5242 -3.5089 11.8093 22 14 4.3339 -4.6653 13.0504 23 1 4.5417 -6.1357 13.0545 24 1 4.8181 -4.0934 14.3325 25 1 2.8871 -4.3703 12.8920 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.7476 1.9312 0.9294 31 1 3.1267 1.4437 -0.0848 32 1 1.6090 1.9802 -0.8445 33 1 3.7525 -0.1629 -0.7894 34 1 6.1748 -0.3261 -1.1897 35 1 7.6589 -1.2209 0.5556 36 1 6.7286 -1.9636 2.7094 37 1 3.2486 -2.1650 3.4685 38 1 3.5784 -2.7878 5.6976 39 1 6.2233 -3.0860 6.6422 40 1 5.6376 -1.4729 7.1145 41 1 3.6731 -2.5082 8.2171 42 1 4.2583 -4.1216 7.7450 43 1 6.3347 -3.7505 9.0481 44 1 5.7500 -2.1371 9.5205 45 1 6.9466 -3.6098 12.6766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178171721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:56 Heat of formation + Delta-G solvation = -39.398110 kcal Electronic energy + Delta-G solvation = -23691.133426 eV Core-core repulsion = 20219.376184 eV Total energy + Delta-G solvation = -3471.757242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80256 -39.72992 -37.15351 -36.15700 -35.59305 -35.22404 -33.08062 -32.05834 -30.53913 -28.40258 -28.13199 -25.28679 -24.16082 -23.79501 -22.56103 -22.37294 -21.73218 -19.56576 -18.94587 -18.45850 -18.00105 -17.07801 -17.00418 -16.60290 -16.29518 -15.98351 -15.81425 -15.61535 -15.23313 -15.06987 -14.66165 -14.43838 -14.25256 -13.89845 -13.75058 -13.54715 -13.33131 -13.13173 -12.85032 -12.76047 -12.55218 -12.38250 -12.33042 -12.30148 -12.01453 -11.71279 -11.67392 -11.51357 -11.23926 -11.07576 -10.97933 -10.67253 -10.55153 -10.22295 -9.29065 -8.28840 -8.19335 -6.30657 0.17135 0.34133 0.47648 1.38771 1.41707 1.43148 1.48353 1.54321 1.93254 2.41960 2.77531 3.06839 3.14437 3.75978 3.84747 3.87230 4.08740 4.13776 4.21084 4.22871 4.34479 4.44175 4.49842 4.54172 4.70062 4.76353 4.81799 4.84606 4.92206 4.93978 4.94516 5.07555 5.16525 5.23427 5.23866 5.28207 5.37280 5.42875 5.51888 5.59453 5.70820 5.82727 5.84653 5.97894 6.22568 6.82725 6.87226 7.32963 7.38786 8.92751 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.002128 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.957352 B =13156.952158 C =14333.494669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.067 4.067 3 C -0.155 4.155 4 S -0.150 6.150 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.121 4.121 8 C -0.105 4.105 9 C -0.144 4.144 10 C 0.168 3.832 11 N -0.669 5.669 12 C 0.699 3.301 13 O -0.609 6.609 14 N -0.722 5.722 15 C 0.149 3.851 16 C -0.101 4.101 17 C 0.024 3.976 18 C -0.540 4.540 19 H 0.066 0.934 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.261 1.261 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.417 0.583 38 H 0.413 0.587 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.069 0.931 43 H -0.006 1.006 44 H -0.007 1.007 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 7.308 -31.501 34.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.195 4.195 3 C -0.214 4.214 4 S 0.092 5.908 5 C -0.240 4.240 6 C -0.136 4.136 7 C -0.142 4.142 8 C -0.126 4.126 9 C -0.166 4.166 10 C 0.067 3.933 11 N -0.316 5.316 12 C 0.400 3.600 13 O -0.489 6.489 14 N -0.377 5.377 15 C 0.025 3.975 16 C -0.139 4.139 17 C -0.014 4.014 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.185 1.185 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.255 0.745 38 H 0.249 0.751 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.723 7.291 -30.380 33.370 hybrid contribution 0.188 -0.271 0.389 0.510 sum -11.535 7.020 -29.991 32.891 Atomic orbital electron populations 1.21649 0.90139 1.03473 1.03895 1.23478 1.00719 0.98916 0.96422 1.22218 1.01715 0.93747 1.03674 1.85328 0.98261 1.74574 1.32620 1.21429 0.97395 1.07123 0.98061 1.21351 0.96684 1.00512 0.95055 1.21378 0.92715 0.99832 1.00226 1.21377 1.01249 0.97819 0.92179 1.21473 0.93772 1.02413 0.98925 1.17271 0.92777 0.98949 0.84279 1.42535 1.14431 1.68621 1.06062 1.16057 0.84339 0.78912 0.80694 1.90866 1.19474 1.54137 1.84433 1.45088 1.18480 1.65126 1.09007 1.21175 0.93070 1.00391 0.82877 1.21601 0.98711 1.00580 0.93019 1.18939 0.94688 0.95317 0.92451 1.21670 0.99890 1.40250 0.96005 0.91551 1.26028 0.95914 0.96171 1.02085 1.70112 1.14034 1.48622 1.24717 0.85411 0.79094 0.78506 0.77804 1.19823 1.21052 1.18461 0.92041 0.88572 0.91479 0.87593 0.92246 0.92217 0.89246 0.82893 0.82513 0.83857 0.85407 0.74484 0.75050 0.92886 0.93087 0.91333 0.91261 0.98802 0.98859 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.20 71.98 0.66 -0.33 16 2 C -0.07 -0.68 2.60 30.59 0.08 -0.60 16 3 C -0.16 -1.50 8.76 71.98 0.63 -0.87 16 4 S -0.15 -2.58 20.01 -56.49 -1.13 -3.71 16 5 C -0.12 -2.63 6.06 22.70 0.14 -2.49 16 6 C -0.11 -1.85 8.02 22.39 0.18 -1.67 16 7 C -0.12 -1.93 10.04 22.27 0.22 -1.70 16 8 C -0.11 -2.18 10.04 22.29 0.22 -1.95 16 9 C -0.14 -3.97 8.73 22.37 0.20 -3.78 16 10 C 0.17 4.44 6.46 38.20 0.25 4.68 16 11 N -0.67 -17.39 5.20 -316.66 -1.65 -19.04 16 12 C 0.70 22.44 8.38 179.05 1.50 23.94 16 13 O -0.61 -24.24 13.45 -4.02 -0.05 -24.29 16 14 N -0.72 -21.04 5.56 -478.53 -2.66 -23.70 16 15 C 0.15 5.35 5.67 86.38 0.49 5.84 16 16 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16 17 C 0.02 1.24 4.97 29.85 0.15 1.39 16 18 C -0.54 -30.22 9.11 25.60 0.23 -29.98 16 19 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 22 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.11 0.85 6.99 -2.39 -0.02 0.83 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.67 5.75 -2.38 -0.01 0.66 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.15 1.65 4.77 -2.91 -0.01 1.64 16 34 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.13 4.23 5.71 -2.91 -0.02 4.22 16 37 H 0.42 8.73 7.63 -92.71 -0.71 8.03 16 38 H 0.41 9.23 8.49 -92.71 -0.79 8.45 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 43 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 45 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -72.52 378.20 1.91 -70.61 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.49 Total: 22.20 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.57 Total: -11.06 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -4.02 Total: -99.78 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -1.13 Total: -3.71 kcal Total: -72.52 1.91 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178171721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.213 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds