Wall clock time and date at job start Tue Mar 31 2020 13:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47368 * 2 1 4 4 H 1.09004 * 109.47504 * 305.00572 * 3 2 1 5 5 C 1.50698 * 109.47506 * 185.00173 * 3 2 1 6 6 H 1.07995 * 120.00239 * 240.00099 * 5 3 2 7 7 C 1.37882 * 119.99909 * 60.00237 * 5 3 2 8 8 N 1.31511 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99914 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47267 * 59.99958 * 9 7 5 11 11 H 1.48498 * 109.46844 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47046 * 299.99709 * 9 7 5 13 13 N 1.46507 * 109.46923 * 65.00130 * 3 2 1 14 14 C 1.34771 * 119.99927 * 274.99986 * 13 3 2 15 15 O 1.21776 * 120.00295 * 0.02562 * 14 13 3 16 16 C 1.41557 * 119.99637 * 180.02562 * 14 13 3 17 17 C 1.35559 * 119.99387 * 179.97438 * 16 14 13 18 18 C 1.41727 * 119.99707 * 179.97438 * 17 16 14 19 19 C 1.37077 * 126.19071 * 0.03506 * 18 17 16 20 20 N 1.30952 * 113.84655 * 179.74245 * 19 18 17 21 21 C 1.29353 * 117.49410 * 0.44331 * 20 19 18 22 22 C 1.50708 * 124.67225 * 179.83517 * 21 20 19 23 23 C 1.52997 * 109.47141 * 59.69732 * 22 21 20 24 24 C 1.52992 * 109.47025 * 299.69339 * 22 21 20 25 25 C 1.53006 * 109.46735 * 179.69512 * 22 21 20 26 26 S 1.70908 * 110.65120 * 359.56669 * 21 20 19 27 27 H 1.08996 * 109.47425 * 59.99361 * 1 2 3 28 28 H 1.08997 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46659 * 299.99944 * 1 2 3 30 30 H 1.09002 * 109.46659 * 240.00056 * 2 1 3 31 31 H 1.09000 * 109.47205 * 120.00188 * 2 1 3 32 32 H 0.97001 * 120.00127 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99693 * 95.00560 * 13 3 2 34 34 H 1.07992 * 120.00173 * 0.02562 * 16 14 13 35 35 H 1.08000 * 120.00711 * 0.02562 * 17 16 14 36 36 H 1.08001 * 123.07156 * 359.96443 * 19 18 17 37 37 H 1.09002 * 109.47153 * 299.99670 * 23 22 21 38 38 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47261 * 59.99842 * 23 22 21 40 40 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 41 41 H 1.08996 * 109.47747 * 300.00019 * 24 22 21 42 42 H 1.09002 * 109.47103 * 60.00431 * 24 22 21 43 43 H 1.08993 * 109.46955 * 300.00223 * 25 22 21 44 44 H 1.09000 * 109.47050 * 60.00052 * 25 22 21 45 45 H 1.09001 * 109.47002 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3366 -2.1730 9 14 6.0050 0.8800 -1.3813 10 1 6.5967 0.1452 -0.2346 11 1 6.3978 0.2158 -2.6500 12 1 6.5004 2.2799 -1.3809 13 7 1.6525 2.0974 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3427 2.6318 0.4307 16 6 0.0611 3.2976 2.5765 17 6 -1.1631 3.8683 2.6921 18 6 -1.5380 4.5019 3.9031 19 6 -0.7672 4.6121 5.0313 20 7 -1.3529 5.2523 6.0121 21 6 -2.5554 5.6837 5.8098 22 6 -3.3790 6.4346 6.8243 23 6 -2.6520 7.7215 7.2196 24 6 -3.5808 5.5614 8.0643 25 6 -4.7402 6.7831 6.2189 26 16 -3.0789 5.2914 4.2309 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8293 -0.0618 -2.9496 33 1 2.2721 2.1231 1.9978 34 1 0.7511 3.3268 3.4067 35 1 -1.8530 3.8394 1.8617 36 1 0.2329 4.2109 5.1033 37 1 -1.6823 7.4732 7.6509 38 1 -3.2479 8.2647 7.9530 39 1 -2.5082 8.3436 6.3361 40 1 -4.1768 6.1043 8.7979 41 1 -4.0987 4.6446 7.7828 42 1 -2.6110 5.3131 8.4956 43 1 -4.5964 7.4051 5.3355 44 1 -5.2581 5.8663 5.9373 45 1 -5.3361 7.3258 6.9528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183814490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:21 Heat of formation + Delta-G solvation = 0.588814 kcal Electronic energy + Delta-G solvation = -24018.205749 eV Core-core repulsion = 20548.182471 eV Total energy + Delta-G solvation = -3470.023279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16514 -39.20621 -37.19991 -35.28654 -33.92193 -32.37483 -30.98846 -28.82669 -27.85854 -27.64743 -27.06510 -26.00431 -23.47508 -22.60325 -21.37750 -19.97214 -19.35680 -18.42202 -18.17273 -16.83131 -16.16531 -15.62910 -15.23022 -15.15600 -14.73374 -14.51028 -14.34211 -14.31936 -14.00117 -13.61840 -13.20600 -12.73366 -12.65682 -12.63313 -12.30297 -12.10532 -12.08686 -11.88470 -11.55524 -11.46912 -11.41748 -11.23782 -11.20932 -10.98545 -10.83386 -10.65607 -10.32509 -10.15911 -9.78633 -9.62314 -9.31817 -9.12390 -9.03096 -8.48972 -8.24288 -7.75925 -6.11547 -4.21012 -0.05171 1.08385 1.53040 1.79992 2.79035 3.26012 3.31354 3.32553 3.70925 4.03858 4.20725 4.34172 4.43694 4.47602 4.61585 4.85790 4.98165 5.12819 5.14210 5.20036 5.20901 5.27111 5.34577 5.44469 5.48743 5.53237 5.66557 5.75812 5.85495 5.89348 6.03774 6.23594 6.37843 6.41041 6.47931 6.68021 7.06152 7.21885 7.38208 7.46225 7.53245 7.63070 7.75110 7.91423 8.19073 8.67270 8.78179 9.13683 9.46218 10.93736 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.002217 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.228057 B =12625.023796 C =13164.516211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.528 3.472 15 O -0.554 6.554 16 C -0.170 4.170 17 C -0.018 4.018 18 C -0.206 4.206 19 C 0.057 3.943 20 N -0.467 5.467 21 C 0.043 3.957 22 C 0.010 3.990 23 C -0.134 4.134 24 C -0.134 4.134 25 C -0.156 4.156 26 S 0.157 5.843 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.389 0.611 34 H 0.123 0.877 35 H 0.139 0.861 36 H 0.181 0.819 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 11.704 18.795 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.316 3.684 15 O -0.436 6.436 16 C -0.195 4.195 17 C -0.041 4.041 18 C -0.327 4.327 19 C -0.098 4.098 20 N -0.179 5.179 21 C -0.232 4.232 22 C 0.007 3.993 23 C -0.193 4.193 24 C -0.193 4.193 25 C -0.214 4.214 26 S 0.419 5.581 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.198 0.802 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.664 11.873 17.878 26.570 hybrid contribution 2.359 -0.501 0.248 2.424 sum -13.306 11.371 18.126 25.197 Atomic orbital electron populations 1.21838 0.98345 0.97983 1.01259 1.21929 0.92623 0.99752 1.02273 1.18795 0.94187 0.89230 0.81081 0.93212 1.21199 0.90729 1.39112 1.06301 0.92146 1.24887 0.98591 0.94813 0.95391 1.69883 1.35209 1.37504 1.09347 0.86516 0.84889 0.78302 0.77439 1.20173 1.21142 1.20195 1.46483 1.14506 1.55169 1.18533 1.16903 0.83269 0.80271 0.87925 1.90806 1.51359 1.60538 1.40856 1.22334 0.97214 1.00866 0.99081 1.20368 0.96763 0.93245 0.93688 1.23931 0.98539 1.09694 1.00505 1.22581 1.01323 0.98921 0.86972 1.65846 1.08003 1.12011 1.32090 1.27212 0.94974 1.03141 0.97836 1.19238 0.93016 0.94735 0.92356 1.21842 1.00930 0.94898 1.01611 1.21840 1.02780 0.99058 0.95597 1.22045 0.95285 1.02466 1.01574 1.83901 1.15117 1.48906 1.10215 0.93138 0.95909 0.94273 0.88284 0.95056 0.92510 0.77863 0.85915 0.84295 0.80228 0.91386 0.91631 0.92471 0.91627 0.92473 0.91396 0.91740 0.91748 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 13 N -0.70 -14.43 5.01 -57.85 -0.29 -14.72 16 14 C 0.53 10.39 6.12 -15.00 -0.09 10.30 16 15 O -0.55 -12.78 13.24 5.12 0.07 -12.72 16 16 C -0.17 -2.53 9.27 -39.27 -0.36 -2.90 16 17 C -0.02 -0.25 9.49 -39.21 -0.37 -0.63 16 18 C -0.21 -2.51 6.32 -38.67 -0.24 -2.76 16 19 C 0.06 0.68 10.84 -18.35 -0.20 0.48 16 20 N -0.47 -5.52 10.47 -11.18 -0.12 -5.64 16 21 C 0.04 0.44 5.77 -13.32 -0.08 0.36 16 22 C 0.01 0.08 0.99 -155.66 -0.15 -0.08 16 23 C -0.13 -0.92 8.45 37.16 0.31 -0.61 16 24 C -0.13 -0.91 8.45 37.15 0.31 -0.60 16 25 C -0.16 -0.89 7.53 37.16 0.28 -0.61 16 26 S 0.16 1.59 21.50 -107.50 -2.31 -0.72 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.39 6.91 8.50 -40.82 -0.35 6.56 16 34 H 0.12 1.45 6.62 -52.49 -0.35 1.11 16 35 H 0.14 2.05 7.46 -52.49 -0.39 1.66 16 36 H 0.18 1.80 6.88 -52.49 -0.36 1.44 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.37 7.91 -51.93 -0.41 -0.04 16 44 H 0.06 0.37 7.91 -51.93 -0.41 -0.04 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -30.67 377.42 -9.35 -40.01 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.02 Total: 5.73 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.97 Total: -9.14 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.22 Total: -44.43 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.07 Total: -12.72 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.31 Total: -0.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.67 -9.35 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183814490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.604 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds