Wall clock time and date at job start Tue Mar 31 2020 13:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47368 * 2 1 4 4 H 1.09004 * 109.47504 * 305.00572 * 3 2 1 5 5 C 1.50698 * 109.47506 * 185.00173 * 3 2 1 6 6 H 1.07995 * 120.00239 * 240.00099 * 5 3 2 7 7 C 1.37882 * 119.99909 * 60.00237 * 5 3 2 8 8 N 1.31511 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99914 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47267 * 59.99958 * 9 7 5 11 11 H 1.48498 * 109.46844 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47046 * 299.99709 * 9 7 5 13 13 N 1.46507 * 109.46923 * 65.00130 * 3 2 1 14 14 C 1.34771 * 119.99927 * 274.99986 * 13 3 2 15 15 O 1.21776 * 120.00295 * 0.02562 * 14 13 3 16 16 C 1.41557 * 119.99637 * 180.02562 * 14 13 3 17 17 C 1.35559 * 119.99387 * 179.97438 * 16 14 13 18 18 C 1.41727 * 119.99707 * 179.97438 * 17 16 14 19 19 C 1.37077 * 126.19071 * 0.03506 * 18 17 16 20 20 N 1.30952 * 113.84655 * 179.74245 * 19 18 17 21 21 C 1.29353 * 117.49410 * 0.44331 * 20 19 18 22 22 C 1.50708 * 124.67225 * 179.83517 * 21 20 19 23 23 C 1.52997 * 109.47141 * 59.69732 * 22 21 20 24 24 C 1.52992 * 109.47025 * 299.69339 * 22 21 20 25 25 C 1.53006 * 109.46735 * 179.69512 * 22 21 20 26 26 S 1.70908 * 110.65120 * 359.56669 * 21 20 19 27 27 H 1.08996 * 109.47425 * 59.99361 * 1 2 3 28 28 H 1.08997 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46659 * 299.99944 * 1 2 3 30 30 H 1.09002 * 109.46659 * 240.00056 * 2 1 3 31 31 H 1.09000 * 109.47205 * 120.00188 * 2 1 3 32 32 H 0.97001 * 120.00127 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99693 * 95.00560 * 13 3 2 34 34 H 1.07992 * 120.00173 * 0.02562 * 16 14 13 35 35 H 1.08000 * 120.00711 * 0.02562 * 17 16 14 36 36 H 1.08001 * 123.07156 * 359.96443 * 19 18 17 37 37 H 1.09002 * 109.47153 * 299.99670 * 23 22 21 38 38 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47261 * 59.99842 * 23 22 21 40 40 H 1.09001 * 109.47066 * 180.02562 * 24 22 21 41 41 H 1.08996 * 109.47747 * 300.00019 * 24 22 21 42 42 H 1.09002 * 109.47103 * 60.00431 * 24 22 21 43 43 H 1.08993 * 109.46955 * 300.00223 * 25 22 21 44 44 H 1.09000 * 109.47050 * 60.00052 * 25 22 21 45 45 H 1.09001 * 109.47002 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4062 0.3366 -2.1730 9 14 6.0050 0.8800 -1.3813 10 1 6.5967 0.1452 -0.2346 11 1 6.3978 0.2158 -2.6500 12 1 6.5004 2.2799 -1.3809 13 7 1.6525 2.0974 1.2519 14 6 0.4353 2.6643 1.3671 15 8 -0.3427 2.6318 0.4307 16 6 0.0611 3.2976 2.5765 17 6 -1.1631 3.8683 2.6921 18 6 -1.5380 4.5019 3.9031 19 6 -0.7672 4.6121 5.0313 20 7 -1.3529 5.2523 6.0121 21 6 -2.5554 5.6837 5.8098 22 6 -3.3790 6.4346 6.8243 23 6 -2.6520 7.7215 7.2196 24 6 -3.5808 5.5614 8.0643 25 6 -4.7402 6.7831 6.2189 26 16 -3.0789 5.2914 4.2309 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8293 -0.0618 -2.9496 33 1 2.2721 2.1231 1.9978 34 1 0.7511 3.3268 3.4067 35 1 -1.8530 3.8394 1.8617 36 1 0.2329 4.2109 5.1033 37 1 -1.6823 7.4732 7.6509 38 1 -3.2479 8.2647 7.9530 39 1 -2.5082 8.3436 6.3361 40 1 -4.1768 6.1043 8.7979 41 1 -4.0987 4.6446 7.7828 42 1 -2.6110 5.3131 8.4956 43 1 -4.5964 7.4051 5.3355 44 1 -5.2581 5.8663 5.9373 45 1 -5.3361 7.3258 6.9528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183814490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:20 Heat of formation + Delta-G solvation = -17.586081 kcal Electronic energy + Delta-G solvation = -24018.993872 eV Core-core repulsion = 20548.182471 eV Total energy + Delta-G solvation = -3470.811401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12454 -40.70103 -37.90425 -37.03817 -35.11247 -34.28709 -32.82412 -30.02982 -28.79447 -28.33110 -28.17295 -27.06143 -25.14936 -23.97199 -22.44998 -21.46946 -20.90553 -19.40069 -19.36358 -18.26055 -17.57638 -17.13052 -16.56972 -16.25134 -15.98873 -15.90979 -15.46726 -15.23682 -14.90342 -14.66992 -14.58743 -14.27365 -13.85217 -13.57638 -13.46694 -13.16148 -13.14306 -13.07352 -12.89897 -12.65439 -12.60846 -12.53678 -12.18515 -12.15488 -12.13876 -12.03772 -11.88696 -11.65801 -11.54793 -11.05683 -10.77703 -10.63183 -10.51172 -10.17026 -9.66355 -9.16519 -8.15247 -6.32584 -1.02441 0.23010 0.67080 0.71044 1.45047 1.46844 1.54559 1.83726 2.38115 2.59258 2.80982 2.99706 3.14131 3.71326 3.87960 3.93758 3.94764 4.02132 4.25584 4.35374 4.49295 4.51337 4.58054 4.70284 4.74476 4.77045 4.85510 4.95489 4.97057 4.98583 5.04190 5.08628 5.11308 5.22980 5.26002 5.31945 5.36621 5.40120 5.45112 5.57194 5.63881 5.81255 5.96031 6.17918 6.66158 6.75338 7.01789 7.34414 7.60340 8.89937 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.002217 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.228057 B =12625.023796 C =13164.516211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.529 3.471 15 O -0.597 6.597 16 C -0.195 4.195 17 C 0.014 3.986 18 C -0.244 4.244 19 C 0.072 3.928 20 N -0.491 5.491 21 C 0.053 3.947 22 C 0.005 3.995 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.156 4.156 26 S 0.187 5.813 27 H 0.025 0.975 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.156 0.844 35 H 0.125 0.875 36 H 0.196 0.804 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.812 12.857 21.594 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.348 5.348 14 C 0.320 3.680 15 O -0.482 6.482 16 C -0.219 4.219 17 C -0.009 4.009 18 C -0.365 4.365 19 C -0.084 4.084 20 N -0.204 5.204 21 C -0.221 4.221 22 C 0.001 3.999 23 C -0.190 4.190 24 C -0.190 4.190 25 C -0.214 4.214 26 S 0.449 5.551 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.174 0.826 35 H 0.143 0.857 36 H 0.213 0.787 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.064 13.037 20.710 29.273 hybrid contribution 2.290 -0.718 -0.493 2.450 sum -13.773 12.319 20.218 27.390 Atomic orbital electron populations 1.21671 0.96998 0.99060 1.00268 1.21780 0.93749 0.99149 1.01274 1.18365 0.93625 0.89207 0.81467 0.98404 1.21558 0.91455 1.38983 1.06726 0.91053 1.25779 1.03327 0.94405 0.95039 1.70042 1.37115 1.38282 1.09857 0.85427 0.79118 0.78416 0.77548 1.18921 1.21204 1.19707 1.46221 1.15490 1.55492 1.17582 1.17518 0.82208 0.79346 0.88879 1.90782 1.52423 1.62192 1.42821 1.22068 0.98715 1.03024 0.98120 1.20300 0.95768 0.91080 0.93713 1.23844 1.00351 1.12026 1.00251 1.22921 1.01750 0.97297 0.86471 1.65962 1.08892 1.13211 1.32344 1.27931 0.94639 1.01272 0.98249 1.19492 0.93560 0.94780 0.92043 1.21837 1.00597 0.94609 1.01996 1.21833 1.02389 0.99151 0.95649 1.22080 0.94360 1.02792 1.02147 1.83819 1.13622 1.47841 1.09823 0.95548 0.93635 0.93794 0.90987 0.94089 0.92607 0.76059 0.82640 0.85698 0.78735 0.92774 0.89300 0.92831 0.89305 0.92774 0.92776 0.91760 0.91720 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.40 2.24 44.24 0.10 14.50 16 4 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 5 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.79 5.29 84.66 0.45 1.24 16 8 N -0.91 -52.75 11.29 21.45 0.24 -52.51 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.70 -29.28 5.01 -455.12 -2.28 -31.56 16 14 C 0.53 21.26 6.12 85.06 0.52 21.78 16 15 O -0.60 -28.78 13.24 -4.59 -0.06 -28.84 16 16 C -0.19 -5.72 9.27 22.47 0.21 -5.51 16 17 C 0.01 0.38 9.49 22.51 0.21 0.60 16 18 C -0.24 -5.64 6.32 22.86 0.14 -5.50 16 19 C 0.07 1.57 10.84 84.55 0.92 2.49 16 20 N -0.49 -10.74 10.47 -189.29 -1.98 -12.72 16 21 C 0.05 0.97 5.77 88.48 0.51 1.48 16 22 C 0.01 0.06 0.99 -52.93 -0.05 0.01 16 23 C -0.13 -1.48 8.45 71.98 0.61 -0.87 16 24 C -0.13 -1.46 8.45 71.98 0.61 -0.85 16 25 C -0.16 -1.31 7.53 71.98 0.54 -0.77 16 26 S 0.19 3.47 21.50 -56.49 -1.21 2.26 16 27 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.95 5.64 -2.39 -0.01 1.94 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.40 14.19 8.50 -92.71 -0.79 13.41 16 34 H 0.16 3.41 6.62 -2.91 -0.02 3.39 16 35 H 0.13 3.76 7.46 -2.91 -0.02 3.74 16 36 H 0.20 3.45 6.88 -2.91 -0.02 3.43 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.56 7.91 -2.39 -0.02 0.54 16 44 H 0.06 0.56 7.91 -2.39 -0.02 0.54 16 45 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -68.56 377.42 2.70 -65.86 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.20 Total: 24.53 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.77 Total: -11.38 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.02 Total: -96.79 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.06 Total: -28.84 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.21 Total: 2.26 kcal Total: -68.56 2.70 -65.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183814490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.270 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds