Wall clock time and date at job start Tue Mar 31 2020 13:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47597 * 2 1 4 4 N 1.46892 * 109.47153 * 185.09000 * 3 2 1 5 5 C 1.46902 * 110.99810 * 170.81191 * 4 3 2 6 6 C 1.53001 * 109.46869 * 298.56332 * 5 4 3 7 7 C 1.46896 * 111.00514 * 294.76457 * 4 3 2 8 8 C 1.50703 * 109.47085 * 169.99984 * 7 4 3 9 9 O 1.21292 * 120.00016 * 0.02562 * 8 7 4 10 10 N 1.34775 * 119.99859 * 180.02562 * 8 7 4 11 11 C 1.39937 * 120.00031 * 174.17325 * 10 8 7 12 12 C 1.38677 * 120.11346 * 335.25658 * 11 10 8 13 13 C 1.38226 * 120.01989 * 179.97438 * 12 11 10 14 14 C 1.38402 * 120.24751 * 0.02562 * 13 12 11 15 15 C 1.38083 * 120.22925 * 359.97438 * 14 13 12 16 16 C 1.38997 * 119.97968 * 0.02562 * 15 14 13 17 17 S 1.76195 * 120.12566 * 180.02562 * 16 15 14 18 18 C 1.76200 * 100.00075 * 354.31785 * 17 16 15 19 19 H 1.07999 * 119.99858 * 5.03868 * 18 17 16 20 20 C 1.38686 * 120.00025 * 185.03480 * 18 17 16 21 21 N 1.31644 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99829 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46667 * 90.00296 * 22 20 18 24 24 H 1.48494 * 109.46907 * 210.00133 * 22 20 18 25 25 H 1.48495 * 109.47196 * 330.00447 * 22 20 18 26 26 H 1.09000 * 109.47250 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46694 * 299.99872 * 1 2 3 28 28 H 1.09001 * 109.46790 * 59.99641 * 1 2 3 29 29 H 1.09006 * 109.47110 * 240.00149 * 2 1 3 30 30 H 1.09001 * 109.46790 * 120.00359 * 2 1 3 31 31 H 1.09004 * 109.46711 * 65.09632 * 3 2 1 32 32 H 1.09001 * 109.47139 * 305.10093 * 3 2 1 33 33 H 1.08997 * 109.47484 * 58.56182 * 5 4 3 34 34 H 1.09004 * 109.47180 * 178.56906 * 5 4 3 35 35 H 1.09002 * 109.47187 * 305.13416 * 6 5 4 36 36 H 1.09001 * 109.47146 * 65.14353 * 6 5 4 37 37 H 1.09003 * 109.47064 * 185.13883 * 6 5 4 38 38 H 1.09000 * 109.46907 * 50.00508 * 7 4 3 39 39 H 1.08996 * 109.47230 * 289.99885 * 7 4 3 40 40 H 0.97003 * 120.00249 * 354.17271 * 10 8 7 41 41 H 1.08001 * 119.99025 * 0.25068 * 12 11 10 42 42 H 1.07993 * 119.87960 * 179.97438 * 13 12 11 43 43 H 1.07993 * 119.88551 * 179.97438 * 14 13 12 44 44 H 1.07994 * 120.00906 * 180.02562 * 15 14 13 45 45 H 0.96999 * 120.00215 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5039 1.4442 -0.1229 5 6 4.0119 2.8045 -0.3450 6 6 3.4388 3.3558 -1.6521 7 6 4.1320 0.8337 1.0564 8 6 5.6018 0.6291 0.7934 9 8 6.0791 0.9597 -0.2715 10 7 6.3857 0.0787 1.7415 11 6 7.7218 -0.2237 1.4558 12 6 8.1184 -0.4545 0.1472 13 6 9.4388 -0.7525 -0.1329 14 6 10.3697 -0.8225 0.8889 15 6 9.9860 -0.5945 2.1956 16 6 8.6607 -0.2941 2.4881 17 16 8.1671 -0.0018 4.1540 18 6 9.6703 -0.3837 4.9901 19 1 10.5599 -0.6149 4.4230 20 6 9.7112 -0.3873 6.3763 21 7 8.6267 -0.1059 7.0676 22 14 11.3047 -0.7929 7.2627 23 1 12.0758 0.4557 7.4908 24 1 10.9967 -1.4299 8.5681 25 1 12.1085 -1.7265 6.4336 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7533 1.9292 0.9322 32 1 1.6042 1.9820 -0.8408 33 1 3.7092 3.4452 0.4832 34 1 5.1000 2.7805 -0.4070 35 1 3.6641 2.6673 -2.4666 36 1 2.3585 3.4657 -1.5573 37 1 3.8856 4.3273 -1.8635 38 1 3.6622 -0.1283 1.2612 39 1 4.0049 1.4907 1.9168 40 1 6.0239 -0.1078 2.6220 41 1 7.3964 -0.3970 -0.6539 42 1 9.7451 -0.9323 -1.1528 43 1 11.3996 -1.0562 0.6635 44 1 10.7153 -0.6496 2.9902 45 1 8.6552 -0.1088 8.0371 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266712092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:03 Heat of formation + Delta-G solvation = -7.701975 kcal Electronic energy + Delta-G solvation = -24566.093647 eV Core-core repulsion = 21095.710853 eV Total energy + Delta-G solvation = -3470.382794 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.26266 -38.40399 -37.19490 -34.36336 -33.58928 -32.76953 -31.17525 -30.30925 -29.20248 -27.29771 -25.90227 -25.12928 -22.49790 -22.09115 -21.95179 -20.73009 -19.81921 -18.37929 -17.18871 -16.74716 -16.10927 -15.60633 -15.54471 -15.17535 -15.07635 -14.89394 -14.47141 -14.06997 -13.78449 -13.44241 -13.32637 -13.00358 -12.90826 -12.79310 -12.41247 -12.23991 -12.07488 -11.76787 -11.68259 -11.57852 -11.33353 -11.23528 -11.19119 -11.07546 -10.88296 -10.64631 -10.38100 -10.08798 -9.81733 -9.57985 -9.25323 -8.77827 -8.66922 -8.41198 -7.62869 -6.54542 -6.52444 -4.25169 1.87431 2.10225 2.92152 3.00158 3.09224 3.15428 3.19147 3.36373 3.89038 3.97122 4.47749 4.65859 4.76775 4.83091 4.89149 4.99242 5.09115 5.13038 5.16271 5.23462 5.30932 5.35536 5.48838 5.51095 5.56857 5.66605 5.69089 5.76562 5.82955 5.90988 5.94551 6.05323 6.10500 6.15570 6.22178 6.24578 6.58879 6.78780 6.90984 6.93193 6.98365 7.13917 7.23667 7.44641 7.70514 7.81622 8.12190 8.43783 8.94554 10.53063 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015190 B = 0.003086 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.831847 B = 9071.614650 C =10167.210091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.051 3.949 4 N -0.519 5.519 5 C 0.042 3.958 6 C -0.145 4.145 7 C 0.032 3.968 8 C 0.511 3.489 9 O -0.510 6.510 10 N -0.658 5.658 11 C 0.129 3.871 12 C -0.112 4.112 13 C -0.145 4.145 14 C -0.119 4.119 15 C -0.128 4.128 16 C -0.107 4.107 17 S 0.028 5.972 18 C -0.544 4.544 19 H 0.095 0.905 20 C 0.077 3.923 21 N -0.866 5.866 22 Si 0.924 3.076 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.411 0.589 41 H 0.138 0.862 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.860 1.650 -11.605 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.077 4.077 4 N -0.244 5.244 5 C -0.085 4.085 6 C -0.202 4.202 7 C -0.099 4.099 8 C 0.298 3.702 9 O -0.385 6.385 10 N -0.303 5.303 11 C 0.026 3.974 12 C -0.134 4.134 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.154 4.154 16 C -0.225 4.225 17 S 0.282 5.718 18 C -0.691 4.691 19 H 0.113 0.887 20 C -0.133 4.133 21 N -0.500 5.500 22 Si 0.750 3.250 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.192 1.192 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.248 0.752 41 H 0.155 0.845 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.155 0.845 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.666 2.041 -11.843 17.460 hybrid contribution 1.768 -0.258 1.380 2.258 sum -10.898 1.783 -10.463 15.212 Atomic orbital electron populations 1.21728 0.95600 1.01795 1.01685 1.21594 0.95454 0.96445 1.02838 1.22267 0.87167 0.97434 1.00804 1.61753 1.04832 1.20814 1.36995 1.22292 1.02460 0.87015 0.96747 1.21771 0.99974 1.00637 0.97831 1.22021 0.92298 1.02262 0.93314 1.20517 0.88311 0.77198 0.84153 1.90613 1.74770 1.48333 1.24807 1.43444 1.09739 1.60970 1.16175 1.17197 0.82587 1.04251 0.93318 1.21102 0.96881 1.00316 0.95095 1.20768 0.93205 1.04551 0.98357 1.20962 0.98759 1.01360 0.92924 1.21278 0.95208 1.02006 0.96891 1.22442 0.95613 1.03725 1.00689 1.83049 1.20444 1.78554 0.89774 1.23260 0.96632 1.55483 0.93729 0.88747 1.25082 0.98007 0.93717 0.96467 1.69990 1.27730 1.44492 1.07773 0.86053 0.81306 0.78970 0.78704 1.19905 1.20505 1.19208 0.92518 0.92858 0.92728 0.90860 0.91983 0.94877 0.89989 0.95511 0.88530 0.91596 0.93230 0.92384 0.87346 0.91600 0.75242 0.84475 0.87029 0.87152 0.84461 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -1.06 5.73 -26.73 -0.15 -1.21 16 3 C 0.05 0.47 4.78 -3.83 -0.02 0.45 16 4 N -0.52 -6.11 4.29 -236.08 -1.01 -7.12 16 5 C 0.04 0.51 5.34 -3.82 -0.02 0.49 16 6 C -0.14 -1.45 9.59 37.16 0.36 -1.09 16 7 C 0.03 0.38 5.31 -4.98 -0.03 0.36 16 8 C 0.51 8.03 7.31 -10.98 -0.08 7.95 16 9 O -0.51 -9.27 11.51 5.55 0.06 -9.20 16 10 N -0.66 -11.19 5.17 -9.70 -0.05 -11.24 16 11 C 0.13 2.55 6.44 -83.44 -0.54 2.01 16 12 C -0.11 -2.12 8.72 -39.42 -0.34 -2.46 16 13 C -0.15 -2.55 10.04 -39.53 -0.40 -2.94 16 14 C -0.12 -2.17 10.03 -39.58 -0.40 -2.56 16 15 C -0.13 -2.69 9.26 -39.36 -0.36 -3.06 16 16 C -0.11 -2.35 6.12 -38.75 -0.24 -2.59 16 17 S 0.03 0.68 20.37 -107.50 -2.19 -1.51 16 18 C -0.54 -14.33 9.08 30.90 0.28 -14.05 16 19 H 0.09 2.40 4.81 -52.49 -0.25 2.14 16 20 C 0.08 2.03 5.49 -17.47 -0.10 1.93 16 21 N -0.87 -23.68 13.22 55.48 0.73 -22.95 16 22 Si 0.92 20.12 29.55 -169.99 -5.02 15.09 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.52 6.58 -51.93 -0.34 0.18 16 31 H 0.03 0.30 8.13 -51.93 -0.42 -0.13 16 32 H 0.08 0.71 6.02 -51.93 -0.31 0.40 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 1.42 5.81 -51.93 -0.30 1.12 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.43 6.51 -51.93 -0.34 0.09 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.11 1.10 6.15 -51.93 -0.32 0.79 16 39 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 40 H 0.41 6.53 7.65 -40.82 -0.31 6.22 16 41 H 0.14 2.57 5.78 -52.49 -0.30 2.26 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.14 2.98 4.93 -52.49 -0.26 2.72 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -29.53 370.50 -10.08 -39.62 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.52 Total: 9.18 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.67 Total: -17.45 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.33 Total: -41.31 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.06 Total: -9.20 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.19 Total: -1.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.53 -10.08 -39.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266712092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.917 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds