Wall clock time and date at job start Tue Mar 31 2020 13:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46892 * 2 1 4 4 C 1.53003 * 109.46752 * 240.00579 * 2 1 3 5 5 S 1.81397 * 109.47417 * 120.00260 * 2 1 3 6 6 C 1.76202 * 103.00050 * 63.16982 * 5 2 1 7 7 C 1.38933 * 120.01002 * 175.30976 * 6 5 2 8 8 C 1.38051 * 119.98948 * 180.30280 * 7 6 5 9 9 C 1.38852 * 120.00812 * 359.44756 * 8 7 6 10 10 N 1.40201 * 119.98521 * 180.27912 * 9 8 7 11 11 C 1.34777 * 119.99623 * 213.48965 * 10 9 8 12 12 O 1.21598 * 119.99764 * 4.94747 * 11 10 9 13 13 N 1.34779 * 120.00168 * 184.93899 * 11 10 9 14 14 C 1.46496 * 120.00211 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47095 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.46792 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00173 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99950 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46938 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47048 * 119.99564 * 20 18 16 23 23 H 1.48504 * 109.46892 * 239.99827 * 20 18 16 24 24 C 1.38842 * 120.01988 * 0.55231 * 9 8 7 25 25 C 1.38059 * 120.01344 * 359.72774 * 24 9 8 26 26 H 1.08995 * 109.47122 * 316.42308 * 1 2 3 27 27 H 1.08998 * 109.47472 * 76.42508 * 1 2 3 28 28 H 1.08999 * 109.46961 * 196.42138 * 1 2 3 29 29 H 1.08997 * 109.47101 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47228 * 300.00373 * 3 2 1 31 31 H 1.08996 * 109.46862 * 59.99980 * 3 2 1 32 32 H 1.08999 * 109.47040 * 289.73380 * 4 2 1 33 33 H 1.08999 * 109.47613 * 49.74067 * 4 2 1 34 34 H 1.09004 * 109.46892 * 169.74455 * 4 2 1 35 35 H 1.08008 * 120.00309 * 0.02828 * 7 6 5 36 36 H 1.07997 * 119.99447 * 179.72546 * 8 7 6 37 37 H 0.97000 * 120.00225 * 33.49839 * 10 9 8 38 38 H 0.97004 * 119.99773 * 0.02562 * 13 11 10 39 39 H 1.09000 * 109.47146 * 300.00076 * 14 13 11 40 40 H 1.09002 * 109.46918 * 59.99832 * 14 13 11 41 41 H 1.09000 * 109.47119 * 300.00011 * 15 14 13 42 42 H 1.09002 * 109.47021 * 60.00405 * 15 14 13 43 43 H 0.97003 * 120.00016 * 179.97438 * 19 18 16 44 44 H 1.08009 * 119.99632 * 179.70005 * 24 9 8 45 45 H 1.07998 * 120.00414 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 16 2.1348 -0.8552 1.4810 6 6 1.5363 -2.4980 1.2623 7 6 1.8874 -3.4917 2.1676 8 6 1.4234 -4.7800 1.9923 9 6 0.5966 -5.0802 0.9179 10 7 0.1209 -6.3875 0.7437 11 6 -0.0697 -6.8752 -0.4982 12 8 0.2550 -6.2158 -1.4668 13 7 -0.6202 -8.0939 -0.6664 14 6 -0.8269 -8.6243 -2.0163 15 6 -1.4622 -10.0133 -1.9267 16 6 -1.6754 -10.5586 -3.3153 17 1 -1.3871 -9.9729 -4.1756 18 6 -2.2396 -11.8049 -3.4874 19 7 -2.5911 -12.5179 -2.4397 20 14 -2.5033 -12.4812 -5.2086 21 1 -2.0263 -11.4915 -6.2077 22 1 -1.7440 -13.7478 -5.3644 23 1 -3.9497 -12.7415 -5.4219 24 6 0.2456 -4.0875 0.0130 25 6 0.7138 -2.8000 0.1842 26 1 -0.3633 0.7445 0.7084 27 1 -0.3634 0.2412 -0.9989 28 1 -0.3633 -0.9857 0.2905 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.8339 -1.7880 -1.1626 33 1 1.5349 -0.3239 -2.1298 34 1 3.1145 -0.5654 -1.3456 35 1 2.5268 -3.2572 3.0059 36 1 1.6998 -5.5535 2.6935 37 1 -0.0711 -6.9408 1.5169 38 1 -0.8794 -8.6199 0.1063 39 1 -1.4875 -7.9582 -2.5712 40 1 0.1321 -8.6953 -2.5295 41 1 -0.8019 -10.6797 -1.3716 42 1 -2.4212 -9.9418 -1.4136 43 1 -2.9884 -13.3945 -2.5608 44 1 -0.3936 -4.3225 -0.8254 45 1 0.4409 -2.0280 -0.5201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273197800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:33 Heat of formation + Delta-G solvation = -3.445292 kcal Electronic energy + Delta-G solvation = -23906.149953 eV Core-core repulsion = 20435.951743 eV Total energy + Delta-G solvation = -3470.198211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49831 -38.77838 -36.93073 -35.16180 -34.49627 -32.90043 -31.18561 -30.34682 -28.98677 -27.74368 -27.59699 -24.89927 -23.17896 -22.72231 -21.23030 -20.91037 -20.50366 -18.43750 -17.92635 -17.16536 -16.36652 -16.00408 -15.57583 -15.24213 -14.75038 -14.66126 -14.54612 -14.49470 -13.97612 -13.79149 -13.56426 -13.34971 -13.24200 -13.02653 -12.84987 -12.48909 -12.32213 -12.08125 -11.78270 -11.59559 -11.50904 -11.23878 -11.10831 -10.79194 -10.65397 -10.57749 -10.36627 -10.20927 -9.95333 -9.62845 -9.30048 -9.03557 -8.96811 -8.58251 -8.39574 -7.31386 -6.13026 -4.15825 1.06909 1.27568 1.33460 2.19775 2.81330 3.25694 3.26338 3.34053 3.39219 3.73120 4.29592 4.30281 4.33353 4.48459 4.65694 4.70702 4.81870 5.12980 5.16988 5.20325 5.24354 5.31719 5.36192 5.40013 5.40964 5.42698 5.47950 5.65661 5.80669 5.83711 5.87324 5.94938 6.11891 6.18878 6.30467 6.31933 6.41982 6.68866 6.83826 6.93299 7.07815 7.50155 7.56991 7.85634 8.14387 8.27311 8.75496 8.90562 9.49239 10.98604 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.002032 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.799711 B =13776.242499 C =14545.103455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.049 4.049 3 C -0.128 4.128 4 C -0.168 4.168 5 S -0.123 6.123 6 C -0.105 4.105 7 C -0.079 4.079 8 C -0.136 4.136 9 C 0.176 3.824 10 N -0.693 5.693 11 C 0.696 3.304 12 O -0.580 6.580 13 N -0.731 5.731 14 C 0.139 3.861 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.104 4.104 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.406 0.594 38 H 0.396 0.604 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.141 0.859 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.781 24.437 11.147 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.159 4.159 3 C -0.186 4.186 4 C -0.226 4.226 5 S 0.121 5.879 6 C -0.218 4.218 7 C -0.103 4.103 8 C -0.159 4.159 9 C 0.078 3.922 10 N -0.340 5.340 11 C 0.397 3.603 12 O -0.457 6.457 13 N -0.384 5.384 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.127 4.127 25 C -0.153 4.153 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.241 0.759 38 H 0.229 0.771 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.159 0.841 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.623 25.351 11.104 28.988 hybrid contribution -1.114 -1.729 -1.084 2.324 sum 7.510 23.622 10.021 26.736 Atomic orbital electron populations 1.22520 0.92467 1.04093 1.03060 1.22869 0.98868 0.98559 0.95561 1.21683 1.01788 0.92254 1.02890 1.22581 1.02304 1.02130 0.95618 1.85239 1.69843 1.02322 1.30532 1.21487 1.03560 0.97051 0.99706 1.20461 1.00058 0.91232 0.98585 1.20772 0.98515 0.97000 0.99578 1.17578 0.94985 0.83471 0.96172 1.42823 1.69504 1.13657 1.08051 1.16074 0.79047 0.82452 0.82759 1.90912 1.56696 1.59585 1.38519 1.45591 1.64671 1.16674 1.11496 1.21675 1.00320 0.97100 0.79292 1.19342 0.96022 0.88844 0.98324 1.21071 1.41034 1.01858 0.91998 0.92128 1.25003 0.95313 0.96852 0.97178 1.69961 1.42091 1.12029 1.29180 0.86447 0.77847 0.78941 0.84281 1.19556 1.20922 1.20926 1.21189 1.00549 0.90954 0.99966 1.21670 0.98344 0.97563 0.97723 0.91324 0.91370 0.90418 0.91576 0.90820 0.91655 0.90031 0.91344 0.91334 0.85405 0.85266 0.75872 0.77107 0.92509 0.92517 0.95893 0.95886 0.92874 0.84082 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 7.89 37.16 0.29 -0.93 16 2 C -0.05 -0.39 0.86 -90.62 -0.08 -0.46 16 3 C -0.13 -0.80 8.40 37.16 0.31 -0.48 16 4 C -0.17 -1.41 7.94 37.16 0.30 -1.11 16 5 S -0.12 -1.21 20.86 -107.50 -2.24 -3.45 16 6 C -0.10 -1.18 5.83 -39.07 -0.23 -1.41 16 7 C -0.08 -0.85 9.78 -39.39 -0.39 -1.23 16 8 C -0.14 -1.47 9.95 -39.42 -0.39 -1.86 16 9 C 0.18 2.29 6.29 -83.58 -0.53 1.76 16 10 N -0.69 -8.86 5.36 -14.17 -0.08 -8.94 16 11 C 0.70 11.74 8.31 -86.91 -0.72 11.02 16 12 O -0.58 -11.83 14.01 5.28 0.07 -11.76 16 13 N -0.73 -12.33 5.56 -65.22 -0.36 -12.69 16 14 C 0.14 2.88 5.61 -4.04 -0.02 2.86 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 16 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 20 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C -0.10 -1.44 8.65 -39.42 -0.34 -1.78 16 25 C -0.13 -1.53 6.03 -39.39 -0.24 -1.77 16 26 H 0.07 0.47 8.03 -51.93 -0.42 0.05 16 27 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 28 H 0.08 0.68 4.79 -51.93 -0.25 0.43 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.83 4.37 -51.93 -0.23 0.60 16 33 H 0.07 0.49 7.94 -51.93 -0.41 0.07 16 34 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.41 3.80 8.84 -40.82 -0.36 3.44 16 38 H 0.40 5.62 8.49 -40.82 -0.35 5.28 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.14 2.20 6.39 -52.48 -0.34 1.87 16 45 H 0.15 1.55 3.08 -52.49 -0.16 1.39 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -31.72 372.21 -10.55 -42.27 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.69 Total: 6.16 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.58 Total: -8.29 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.30 Total: -46.70 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.24 Total: -3.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.72 -10.55 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273197800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.826 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds