Wall clock time and date at job start Tue Mar 31 2020 13:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47186 * 2 1 4 4 N 1.46898 * 109.47417 * 119.99896 * 2 1 3 5 5 C 1.46901 * 111.00035 * 181.37053 * 4 2 1 6 6 C 1.39675 * 110.99810 * 57.41497 * 4 2 1 7 7 C 1.38933 * 120.07176 * 58.05518 * 6 4 2 8 8 C 1.38091 * 119.92146 * 179.97438 * 7 6 4 9 9 C 1.38301 * 120.07614 * 0.02562 * 8 7 6 10 10 C 1.38270 * 120.15060 * 359.97438 * 9 8 7 11 11 C 1.38120 * 120.07499 * 359.97438 * 10 9 8 12 12 C 1.50705 * 120.04025 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46729 * 259.99745 * 12 11 10 14 14 C 1.34779 * 119.99586 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00008 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99606 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.46637 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99757 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00097 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99921 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99878 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99785 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47051 * 90.00376 * 22 20 18 24 24 H 1.48504 * 109.46804 * 209.99966 * 22 20 18 25 25 H 1.48502 * 109.47056 * 329.99876 * 22 20 18 26 26 H 1.09003 * 109.47170 * 299.99786 * 1 2 3 27 27 H 1.08990 * 109.47141 * 60.00062 * 1 2 3 28 28 H 1.08998 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47170 * 240.00214 * 2 1 3 30 30 H 1.08996 * 109.47064 * 186.28859 * 3 2 1 31 31 H 1.08997 * 109.46694 * 306.29111 * 3 2 1 32 32 H 1.09003 * 109.46980 * 66.28840 * 3 2 1 33 33 H 1.09004 * 109.47314 * 296.04180 * 5 4 2 34 34 H 1.08991 * 109.47417 * 56.05079 * 5 4 2 35 35 H 1.09008 * 109.47104 * 176.04966 * 5 4 2 36 36 H 1.07999 * 120.04039 * 0.24818 * 7 6 4 37 37 H 1.08000 * 119.95819 * 179.97438 * 8 7 6 38 38 H 1.07994 * 119.92872 * 179.97438 * 9 8 7 39 39 H 1.08000 * 119.96060 * 180.02562 * 10 9 8 40 40 H 1.08996 * 109.46978 * 19.99320 * 12 11 10 41 41 H 1.08995 * 109.47162 * 139.99704 * 12 11 10 42 42 H 0.97003 * 120.00679 * 359.97438 * 13 12 11 43 43 H 1.08996 * 109.46873 * 299.99530 * 16 14 13 44 44 H 1.08995 * 109.47483 * 60.00047 * 16 14 13 45 45 H 0.96999 * 119.99882 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.4878 -0.6837 1.2498 6 6 1.5245 -1.9970 1.2615 7 6 1.7744 -2.8866 0.2240 8 6 1.2837 -4.1758 0.2888 9 6 0.5439 -4.5815 1.3846 10 6 0.2934 -3.6987 2.4189 11 6 0.7820 -2.4081 2.3610 12 6 0.5080 -1.4464 3.4884 13 7 -0.5979 -0.5604 3.1165 14 6 -1.0206 0.3873 3.9766 15 8 -0.4857 0.5063 5.0585 16 6 -2.1586 1.2982 3.5943 17 16 -2.4886 2.4524 4.9490 18 6 -3.8219 3.3694 4.2517 19 1 -4.1819 3.1309 3.2618 20 6 -4.4096 4.3983 4.9746 21 7 -3.9705 4.6893 6.1809 22 14 -5.8235 5.3699 4.2356 23 1 -7.1102 4.7193 4.5909 24 1 -5.8051 6.7551 4.7705 25 1 -5.6792 5.4077 2.7581 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1242 1.4446 -0.1126 31 1 1.5876 1.9878 -0.8283 32 1 1.7715 1.9228 0.9409 33 1 3.8838 -1.2484 0.4057 34 1 3.8470 0.3442 1.1999 35 1 3.8222 -1.1405 2.1813 36 1 2.3554 -2.5716 -0.6302 37 1 1.4773 -4.8677 -0.5175 38 1 0.1610 -5.5901 1.4326 39 1 -0.2844 -4.0189 3.2733 40 1 0.2403 -2.0048 4.3853 41 1 1.4002 -0.8515 3.6835 42 1 -1.0261 -0.6559 2.2513 43 1 -1.8912 1.8570 2.6975 44 1 -3.0507 0.7031 3.3991 45 1 -4.3815 5.4080 6.6863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353388574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:21 Heat of formation + Delta-G solvation = -4.891212 kcal Electronic energy + Delta-G solvation = -25116.208875 eV Core-core repulsion = 21645.947964 eV Total energy + Delta-G solvation = -3470.260910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.66381 -38.81473 -37.48064 -34.64617 -32.67961 -32.38613 -31.56902 -30.06631 -29.14094 -27.50364 -25.78355 -25.42844 -25.11069 -22.95562 -21.33205 -20.25843 -20.07726 -17.87533 -17.28528 -16.40611 -16.04135 -15.93543 -15.77482 -15.16854 -14.88203 -14.76659 -14.65875 -14.37531 -13.86470 -13.54272 -13.24673 -13.03883 -12.82282 -12.77381 -12.65846 -12.46923 -12.34365 -12.20233 -11.88580 -11.65510 -11.46429 -11.42153 -11.25772 -11.03096 -10.98816 -10.96877 -10.72859 -9.77297 -9.46957 -9.06905 -9.02719 -8.85342 -8.69836 -8.61521 -8.16788 -6.43903 -6.17426 -3.86993 0.98478 1.05029 3.12247 3.24482 3.26217 3.30069 3.33359 3.49316 3.52019 4.00091 4.24778 4.54465 4.60466 4.68459 4.73380 4.76162 5.02293 5.08113 5.10370 5.12075 5.17576 5.24278 5.30546 5.40700 5.50745 5.57824 5.59808 5.62937 5.65540 5.68865 5.73853 5.78101 5.96544 6.01432 6.06162 6.07778 6.16513 6.21058 6.23224 6.34948 6.57020 6.71233 6.78789 7.17778 7.63741 7.88248 8.39524 8.77084 9.27865 10.89987 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.002992 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.373571 B = 9355.056825 C = 9875.888066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.085 3.915 3 C -0.149 4.149 4 N -0.500 5.500 5 C 0.027 3.973 6 C 0.112 3.888 7 C -0.154 4.154 8 C -0.107 4.107 9 C -0.126 4.126 10 C -0.096 4.096 11 C -0.084 4.084 12 C 0.175 3.825 13 N -0.726 5.726 14 C 0.532 3.468 15 O -0.520 6.520 16 C -0.152 4.152 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.395 0.605 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.981 -17.035 -15.933 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 C -0.207 4.207 4 N -0.221 5.221 5 C -0.120 4.120 6 C 0.018 3.982 7 C -0.174 4.174 8 C -0.126 4.126 9 C -0.144 4.144 10 C -0.115 4.115 11 C -0.085 4.085 12 C 0.051 3.949 13 N -0.381 5.381 14 C 0.318 3.682 15 O -0.395 6.395 16 C -0.303 4.303 17 S 0.168 5.832 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.709 -16.416 -13.541 25.314 hybrid contribution -1.376 -0.097 -2.965 3.270 sum 12.333 -16.513 -16.506 26.405 Atomic orbital electron populations 1.21999 0.94155 1.02025 1.02986 1.21654 0.95980 0.94946 0.89534 1.21919 1.00613 0.94861 1.03257 1.59693 1.09280 1.12804 1.40367 1.22470 0.85773 1.02600 1.01117 1.18644 0.96807 0.89129 0.93609 1.21612 1.01815 0.94559 0.99388 1.21035 0.97711 0.95679 0.98128 1.21159 0.99355 0.99788 0.94127 1.21136 0.98689 0.92762 0.98911 1.19917 0.98147 0.94698 0.95743 1.19915 0.91146 0.90348 0.93458 1.46037 1.36381 1.35515 1.20128 1.20233 0.83809 0.79999 0.84146 1.90692 1.56909 1.69626 1.22243 1.23525 0.98457 1.01524 1.06758 1.85388 1.44317 1.35696 1.17827 1.22879 1.19921 1.20536 1.04949 0.91004 1.24983 0.97403 0.96424 0.94772 1.70021 1.40516 1.29490 1.10293 0.86187 0.81358 0.78884 0.79179 1.20308 1.20793 1.19715 0.90969 0.91800 0.92688 0.94126 0.92693 0.91882 0.90967 0.95445 0.90330 0.91125 0.86428 0.86199 0.85884 0.85373 0.91581 0.90061 0.77017 0.89435 0.89489 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.29 37.16 0.31 -1.20 16 2 C 0.09 0.80 2.38 -67.71 -0.16 0.63 16 3 C -0.15 -1.36 8.72 37.16 0.32 -1.04 16 4 N -0.50 -5.04 3.76 -171.35 -0.64 -5.69 16 5 C 0.03 0.23 9.09 60.06 0.55 0.78 16 6 C 0.11 1.13 3.19 -83.78 -0.27 0.86 16 7 C -0.15 -1.34 8.57 -39.38 -0.34 -1.68 16 8 C -0.11 -0.84 10.04 -39.61 -0.40 -1.23 16 9 C -0.13 -1.01 10.04 -39.55 -0.40 -1.41 16 10 C -0.10 -0.89 9.66 -39.61 -0.38 -1.27 16 11 C -0.08 -0.89 5.27 -104.42 -0.55 -1.44 16 12 C 0.17 2.30 5.43 -5.19 -0.03 2.27 16 13 N -0.73 -10.53 5.15 -61.47 -0.32 -10.85 16 14 C 0.53 10.30 7.85 -10.98 -0.09 10.21 16 15 O -0.52 -12.15 15.86 5.56 0.09 -12.06 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.07 0.83 6.43 -51.93 -0.33 0.49 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.54 7.12 -51.93 -0.37 0.17 16 29 H 0.04 0.35 7.12 -51.93 -0.37 -0.02 16 30 H 0.05 0.44 6.65 -51.93 -0.35 0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.21 7.45 -51.93 -0.39 -0.18 16 34 H 0.08 0.64 6.21 -51.93 -0.32 0.32 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.12 0.91 7.04 -52.49 -0.37 0.54 16 37 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 1.06 8.04 -52.49 -0.42 0.64 16 40 H 0.07 0.89 8.00 -51.93 -0.42 0.47 16 41 H 0.08 1.19 7.80 -51.93 -0.40 0.78 16 42 H 0.39 4.99 6.34 -40.82 -0.26 4.73 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -33.92 378.39 -9.61 -43.53 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.93 Total: 2.83 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.01 Total: -10.52 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.23 Total: -42.19 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.92 -9.61 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353388574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.640 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds