Wall clock time and date at job start Tue Mar 31 2020 13:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 H 1.09007 * 109.46994 * 55.00502 * 3 2 1 5 5 C 1.50697 * 109.47120 * 175.00043 * 3 2 1 6 6 H 1.08006 * 119.99723 * 120.00341 * 5 3 2 7 7 C 1.37876 * 120.00349 * 299.99994 * 5 3 2 8 8 N 1.31512 * 119.99583 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00138 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.46992 * 60.00046 * 9 7 5 11 11 H 1.48501 * 109.46958 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47011 * 300.00127 * 9 7 5 13 13 N 1.46505 * 109.47308 * 295.00631 * 3 2 1 14 14 C 1.34773 * 120.00156 * 84.99752 * 13 3 2 15 15 O 1.21665 * 120.00067 * 359.97438 * 14 13 3 16 16 C 1.46899 * 119.99922 * 180.02562 * 14 13 3 17 17 C 1.36295 * 125.55466 * 180.02562 * 16 14 13 18 18 C 1.40702 * 107.64582 * 179.97438 * 17 16 14 19 19 C 1.40344 * 107.30856 * 0.02562 * 18 17 16 20 20 C 1.40185 * 119.96296 * 179.97438 * 19 18 17 21 21 C 1.35432 * 121.68007 * 359.97438 * 20 19 18 22 22 C 1.40991 * 121.16389 * 0.02562 * 21 20 19 23 23 C 1.40355 * 121.16803 * 179.97438 * 22 21 20 24 24 C 1.36296 * 119.70204 * 180.02562 * 23 22 21 25 25 C 1.39121 * 120.92270 * 359.97438 * 24 23 22 26 26 C 1.36472 * 120.83154 * 359.97438 * 25 24 23 27 27 C 1.39744 * 119.68666 * 0.04726 * 26 25 24 28 28 N 1.37271 * 107.33430 * 359.75386 * 19 18 17 29 29 H 0.96995 * 125.58692 * 180.25732 * 28 19 18 30 30 H 1.09002 * 109.46392 * 299.99831 * 1 2 3 31 31 H 1.08998 * 109.46844 * 59.99532 * 1 2 3 32 32 H 1.08992 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46707 * 240.00488 * 2 1 3 34 34 H 1.08990 * 109.47128 * 120.00598 * 2 1 3 35 35 H 0.97003 * 119.99664 * 179.97438 * 8 7 5 36 36 H 0.96999 * 119.99113 * 265.00006 * 13 3 2 37 37 H 1.08006 * 126.17941 * 359.97438 * 17 16 14 38 38 H 1.08003 * 119.15856 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.41773 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.15102 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.53888 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.58605 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.15846 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8889 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8799 1.3810 10 1 6.5006 2.2798 1.3806 11 1 6.3980 0.2155 2.6497 12 1 6.5967 0.1451 0.2341 13 7 1.6524 2.0976 -1.2518 14 6 0.4352 2.6645 -1.3668 15 8 -0.3420 2.6318 -0.4313 16 6 0.0463 3.3208 -2.6222 17 6 -1.1503 3.9279 -2.8615 18 6 -1.1195 4.4279 -4.1763 19 6 0.1332 4.1010 -4.7181 20 6 0.4480 4.4777 -6.0312 21 6 -0.4307 5.1567 -6.8064 22 6 -1.7053 5.5155 -6.3220 23 6 -2.6158 6.2197 -7.1251 24 6 -3.8399 6.5518 -6.6264 25 6 -4.2024 6.2019 -5.3296 26 6 -3.3408 5.5163 -4.5233 27 6 -2.0776 5.1609 -5.0040 28 7 0.8348 3.4277 -3.7491 29 1 1.7363 3.0822 -3.8423 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8898 35 1 3.8295 -0.0619 2.9494 36 1 2.2719 2.1232 -1.9977 37 1 -1.9736 4.0103 -2.1673 38 1 1.4160 4.2197 -6.4349 39 1 -0.1498 5.4290 -7.8130 40 1 -2.3473 6.4980 -8.1336 41 1 -4.5387 7.0933 -7.2468 42 1 -5.1782 6.4756 -4.9564 43 1 -3.6336 5.2498 -3.5185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358062437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:14 Heat of formation + Delta-G solvation = 28.224378 kcal Electronic energy + Delta-G solvation = -25789.145231 eV Core-core repulsion = 22184.876369 eV Total energy + Delta-G solvation = -3604.268862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58355 -39.47495 -38.49712 -35.38366 -35.11379 -32.79514 -32.29403 -31.10298 -30.81595 -29.21913 -28.42650 -26.98075 -24.05794 -23.21872 -22.82355 -22.45200 -20.78982 -20.04382 -19.48612 -18.76411 -18.01966 -16.78249 -16.06162 -15.93863 -15.50525 -15.14834 -15.02202 -14.53765 -14.27346 -14.16132 -13.72617 -13.58316 -13.34461 -13.10302 -12.97301 -12.87951 -12.71161 -12.18340 -12.07358 -11.59970 -11.31933 -11.20767 -11.07799 -10.91761 -10.88070 -10.86039 -10.41364 -10.26583 -9.96755 -9.71863 -9.36832 -9.14829 -9.05407 -8.58281 -8.07445 -8.02312 -7.54015 -6.19704 -4.30113 0.41152 1.02154 1.62934 2.40666 2.92023 2.97591 3.20055 3.26099 3.26523 3.83800 3.86160 4.09621 4.29308 4.48978 4.72243 4.74201 4.91345 4.93063 5.07531 5.11720 5.19938 5.20533 5.34205 5.51748 5.61849 5.78811 5.85587 5.99139 6.15299 6.16259 6.33981 6.40106 6.41204 6.44912 6.47532 6.59525 6.71049 6.82556 6.95785 6.99006 7.13187 7.23448 7.31464 7.33226 7.53421 7.63568 7.80557 8.08991 8.48161 8.65884 8.91659 9.36958 10.85526 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.002675 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.628439 B =10466.413149 C =11237.872138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.703 5.703 14 C 0.567 3.433 15 O -0.527 6.527 16 C 0.021 3.979 17 C -0.113 4.113 18 C -0.112 4.112 19 C 0.085 3.915 20 C -0.098 4.098 21 C -0.094 4.094 22 C -0.068 4.068 23 C -0.100 4.100 24 C -0.131 4.131 25 C -0.115 4.115 26 C -0.108 4.108 27 C 0.005 3.995 28 N -0.551 5.551 29 H 0.420 0.580 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.024 0.976 33 H 0.031 0.969 34 H 0.101 0.899 35 H 0.266 0.734 36 H 0.383 0.617 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.135 9.263 -18.347 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.352 3.648 15 O -0.404 6.404 16 C -0.091 4.091 17 C -0.138 4.138 18 C -0.118 4.118 19 C -0.028 4.028 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.069 4.069 23 C -0.118 4.118 24 C -0.149 4.149 25 C -0.133 4.133 26 C -0.126 4.126 27 C 0.004 3.996 28 N -0.151 5.151 29 H 0.258 0.742 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.214 0.786 37 H 0.171 0.829 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.484 9.016 -17.370 21.748 hybrid contribution 1.839 -0.235 -0.350 1.887 sum -7.645 8.782 -17.720 21.203 Atomic orbital electron populations 1.21856 0.98219 0.98280 1.01294 1.21944 0.92723 0.99570 1.02406 1.18870 0.94385 0.89280 0.80494 0.92911 1.21143 0.90504 1.39545 1.06484 0.92229 1.24874 0.98681 0.94674 0.95309 1.69876 1.35309 1.37187 1.09311 0.86503 0.84700 0.78341 0.77535 1.20163 1.21026 1.20173 1.46479 1.14044 1.55737 1.18750 1.17107 0.83236 0.79257 0.85235 1.90829 1.51481 1.59831 1.38282 1.20748 0.93032 1.06897 0.88450 1.20631 0.97189 1.00868 0.95155 1.18827 0.93846 1.04561 0.94577 1.18229 0.92777 1.00427 0.91348 1.19692 1.00397 1.00830 0.90849 1.20552 0.92590 0.98811 0.99427 1.17888 0.94943 1.00571 0.93451 1.20942 0.93662 0.98065 0.99148 1.20767 0.96853 1.01247 0.96006 1.20868 0.99615 0.98594 0.94196 1.20877 0.92898 0.98585 1.00212 1.18296 0.92997 0.96195 0.92090 1.42035 1.15617 1.46714 1.10759 0.74212 0.92981 0.94321 0.95660 0.95031 0.88087 0.92367 0.78568 0.82904 0.86039 0.85284 0.85804 0.86279 0.86099 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.60 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.07 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -14.02 5.02 -56.17 -0.28 -14.31 16 14 C 0.57 11.20 6.36 -12.76 -0.08 11.12 16 15 O -0.53 -12.10 13.98 5.22 0.07 -12.02 16 16 C 0.02 0.35 6.98 -82.30 -0.57 -0.23 16 17 C -0.11 -1.76 10.43 -39.35 -0.41 -2.17 16 18 C -0.11 -1.61 6.20 -104.94 -0.65 -2.26 16 19 C 0.09 1.12 7.25 -83.91 -0.61 0.51 16 20 C -0.10 -1.04 9.91 -39.85 -0.40 -1.43 16 21 C -0.09 -0.93 9.67 -39.54 -0.38 -1.31 16 22 C -0.07 -0.77 5.74 -106.82 -0.61 -1.39 16 23 C -0.10 -0.93 9.77 -39.48 -0.39 -1.31 16 24 C -0.13 -1.15 9.95 -39.95 -0.40 -1.55 16 25 C -0.11 -1.10 9.96 -39.89 -0.40 -1.49 16 26 C -0.11 -1.23 9.74 -39.66 -0.39 -1.62 16 27 C 0.00 0.06 5.89 -104.86 -0.62 -0.56 16 28 N -0.55 -7.28 6.06 -7.29 -0.04 -7.32 16 29 H 0.42 4.44 8.12 -40.82 -0.33 4.11 16 30 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 31 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.38 6.48 7.60 -40.82 -0.31 6.17 16 37 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.13 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -30.52 356.73 -10.94 -41.47 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.39 Total: 10.67 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -6.28 Total: -15.52 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.30 Total: -45.07 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.52 -10.94 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358062437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.690 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds