Wall clock time and date at job start Tue Mar 31 2020 13:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47414 * 2 1 4 4 H 1.09000 * 109.83303 * 54.16660 * 3 2 1 5 5 C 1.52439 * 109.79998 * 175.00421 * 3 2 1 6 6 C 1.39133 * 123.57091 * 288.29837 * 5 3 2 7 7 C 1.32914 * 115.65090 * 179.82441 * 6 5 3 8 8 S 1.75710 * 109.59472 * 359.72433 * 7 6 5 9 9 C 1.34645 * 122.62552 * 108.00386 * 5 3 2 10 10 C 1.51396 * 125.09828 * 0.46886 * 9 5 3 11 11 C 1.53197 * 109.06769 * 341.93500 * 10 9 5 12 12 N 1.46975 * 109.79609 * 293.33185 * 3 2 1 13 13 C 1.34770 * 120.87352 * 105.47873 * 12 3 2 14 14 O 1.21284 * 120.00325 * 359.97438 * 13 12 3 15 15 C 1.50703 * 120.00278 * 179.97438 * 13 12 3 16 16 N 1.46501 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.36939 * 119.99765 * 90.00238 * 16 15 13 18 18 H 1.08003 * 120.00302 * 8.14295 * 17 16 15 19 19 C 1.38808 * 119.99650 * 188.14062 * 17 16 15 20 20 N 1.31620 * 120.00478 * 24.99810 * 19 17 16 21 21 Si 1.86803 * 119.99916 * 205.00081 * 19 17 16 22 22 H 1.48494 * 109.47697 * 84.99062 * 21 19 17 23 23 H 1.48499 * 109.47017 * 204.99476 * 21 19 17 24 24 H 1.48503 * 109.46845 * 324.98943 * 21 19 17 25 25 C 1.46500 * 120.00098 * 269.99543 * 16 15 13 26 26 C 1.53000 * 109.46796 * 84.06432 * 25 16 15 27 27 H 1.09001 * 109.47172 * 59.99589 * 1 2 3 28 28 H 1.08991 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46681 * 300.00022 * 1 2 3 30 30 H 1.09006 * 109.47173 * 240.00063 * 2 1 3 31 31 H 1.09003 * 109.47683 * 120.00362 * 2 1 3 32 32 H 1.08001 * 122.17548 * 359.64852 * 6 5 3 33 33 H 1.08005 * 125.20375 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.54079 * 222.06236 * 10 9 5 35 35 H 1.08995 * 109.60761 * 101.85007 * 10 9 5 36 36 H 1.09007 * 109.61831 * 285.82137 * 11 10 9 37 37 H 1.08995 * 109.77886 * 165.35480 * 11 10 9 38 38 H 1.08998 * 109.46906 * 299.99899 * 15 13 12 39 39 H 1.08993 * 109.46864 * 59.99611 * 15 13 12 40 40 H 0.96996 * 120.00435 * 180.02562 * 20 19 17 41 41 H 1.08993 * 109.46956 * 204.06202 * 25 16 15 42 42 H 1.09002 * 109.47177 * 324.06633 * 25 16 15 43 43 H 1.09001 * 109.47209 * 180.02562 * 26 25 16 44 44 H 1.09005 * 109.47227 * 300.00079 * 26 25 16 45 45 H 1.08992 * 109.47168 * 60.00046 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9913 0.8313 5 6 3.5593 1.4530 0.1249 6 6 4.2373 1.1264 1.2951 7 6 5.5635 1.1844 1.2270 8 16 6.0499 1.6681 -0.3906 9 6 4.3698 1.7770 -0.9003 10 6 3.9050 2.1769 -2.2846 11 6 2.4520 1.7295 -2.4734 12 7 1.6896 2.0944 -1.2698 13 6 0.6956 3.0024 -1.3298 14 8 0.0765 3.2910 -0.3276 15 6 0.3531 3.6593 -2.6422 16 7 -0.7535 4.5987 -2.4440 17 6 -0.4940 5.9038 -2.1206 18 1 0.5205 6.2736 -2.1401 19 6 -1.5351 6.7514 -1.7677 20 7 -2.6474 6.2554 -1.2686 21 14 -1.3574 8.5963 -2.0012 22 1 -1.7251 8.9567 -3.3941 23 1 -2.2553 9.3039 -1.0534 24 1 0.0494 8.9949 -1.7417 25 6 -2.1376 4.1419 -2.5919 26 6 -2.6080 3.5075 -1.2816 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.7197 0.8469 2.2008 33 1 6.2389 0.9637 2.0404 34 1 4.5345 1.6965 -3.0335 35 1 3.9701 3.2594 -2.3937 36 1 2.4172 0.6492 -2.6152 37 1 2.0230 2.2268 -3.3432 38 1 1.2238 4.1969 -3.0175 39 1 0.0578 2.8975 -3.3635 40 1 -3.3749 6.8477 -1.0223 41 1 -2.7764 4.9910 -2.8344 42 1 -2.1932 3.4048 -3.3930 43 1 -3.6376 3.1672 -1.3917 44 1 -1.9690 2.6583 -1.0390 45 1 -2.5523 4.2445 -0.4805 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368828549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:32 Heat of formation + Delta-G solvation = 33.778221 kcal Electronic energy + Delta-G solvation = -26419.786706 eV Core-core repulsion = 22951.202627 eV Total energy + Delta-G solvation = -3468.584078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.12692 -37.96336 -35.75857 -35.08086 -33.75471 -31.43598 -31.01069 -29.48151 -28.94935 -26.72778 -25.52801 -23.81705 -23.21334 -22.38600 -21.48639 -20.32547 -18.85573 -18.00433 -17.07604 -16.71494 -16.08575 -15.94515 -15.07142 -15.04645 -14.64738 -14.15402 -13.83158 -13.55045 -13.34447 -13.27236 -13.19504 -13.11195 -12.55920 -12.22677 -11.95573 -11.77739 -11.72577 -11.56851 -11.37529 -11.28041 -11.22676 -11.15133 -10.78461 -10.75417 -10.68657 -10.55076 -10.37573 -9.91254 -9.63034 -9.26088 -8.90820 -8.60708 -8.37641 -8.24202 -8.16006 -6.84625 -5.68476 -3.00579 0.95734 1.56476 1.92992 2.64278 3.36372 3.46105 3.51270 3.51952 3.56074 4.54482 4.62358 4.67556 4.97796 5.11122 5.13124 5.16075 5.29437 5.34790 5.39096 5.47369 5.58090 5.62561 5.65269 5.73736 5.78580 5.91337 6.02940 6.05834 6.08594 6.15302 6.24039 6.25733 6.27911 6.48462 6.54075 6.66747 6.99606 7.07534 7.23192 7.31971 7.71309 7.89398 8.01707 8.35232 8.40828 9.10592 9.29496 9.89541 10.33008 11.34541 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.004008 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.170057 B = 6983.900530 C = 7807.671986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.203 3.797 4 H 0.105 0.895 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.218 4.218 8 S 0.078 5.922 9 C -0.163 4.163 10 C -0.066 4.066 11 C 0.118 3.882 12 N -0.623 5.623 13 C 0.476 3.524 14 O -0.499 6.499 15 C 0.134 3.866 16 N -0.568 5.568 17 C -0.248 4.248 18 H 0.072 0.928 19 C 0.002 3.998 20 N -0.888 5.888 21 Si 0.898 3.102 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.282 1.282 25 C 0.166 3.834 26 C -0.141 4.141 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.251 0.749 41 H 0.090 0.910 42 H 0.000 1.000 43 H 0.009 0.991 44 H 0.018 0.982 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.300 -14.257 -1.077 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.097 3.903 4 H 0.122 0.878 5 C -0.124 4.124 6 C -0.149 4.149 7 C -0.353 4.353 8 S 0.344 5.656 9 C -0.280 4.280 10 C -0.107 4.107 11 C -0.008 4.008 12 N -0.361 5.361 13 C 0.262 3.738 14 O -0.370 6.370 15 C 0.001 3.999 16 N -0.286 5.286 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.196 4.196 20 N -0.532 5.532 21 Si 0.729 3.271 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.208 1.208 25 C 0.041 3.959 26 C -0.200 4.200 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.180 0.820 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.018 0.982 43 H 0.028 0.972 44 H 0.037 0.963 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.155 -13.669 -1.168 20.442 hybrid contribution -0.916 0.562 1.050 1.503 sum 14.238 -13.107 -0.118 19.353 Atomic orbital electron populations 1.21676 0.94783 1.00741 1.02991 1.21765 0.96690 0.95541 1.01850 1.19943 0.87429 0.93635 0.89341 0.87750 1.19932 0.96834 1.03065 0.92580 1.19956 0.93360 1.02647 0.98956 1.25263 0.98959 1.10684 1.00385 1.84080 1.07082 1.68516 1.05911 1.24648 0.94759 1.08352 1.00248 1.20717 0.97063 1.02201 0.90676 1.21559 0.89868 1.00436 0.88910 1.48776 1.36290 1.43463 1.07611 1.23632 0.77933 0.77385 0.94809 1.90687 1.49245 1.60079 1.36998 1.20967 0.93688 0.93137 0.92106 1.44293 1.00136 1.05436 1.78780 1.19209 0.93783 0.84069 1.40639 0.90967 1.24729 0.97291 0.97954 0.99631 1.70218 1.06728 1.33128 1.43162 0.86349 0.77235 0.85992 0.77555 1.21545 1.21961 1.20815 1.20927 0.84858 0.96983 0.93089 1.22251 0.95230 0.99885 1.02604 0.92384 0.93270 0.92415 0.92031 0.91536 0.84443 0.82013 0.89808 0.89604 0.91378 0.88664 0.90985 0.91617 0.93879 0.89218 0.98155 0.97229 0.96294 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.74 37.16 0.36 -1.64 16 2 C -0.12 -1.48 5.52 -26.73 -0.15 -1.63 16 3 C 0.20 2.97 2.50 -67.96 -0.17 2.80 16 4 H 0.10 1.83 7.16 -51.93 -0.37 1.46 16 5 C -0.11 -1.48 5.17 -104.70 -0.54 -2.02 16 6 C -0.12 -1.39 9.96 -41.09 -0.41 -1.80 16 7 C -0.22 -2.29 11.20 28.89 0.32 -1.96 16 8 S 0.08 0.84 23.31 -107.50 -2.51 -1.66 16 9 C -0.16 -2.01 6.39 -35.24 -0.23 -2.24 16 10 C -0.07 -0.71 6.43 -27.44 -0.18 -0.89 16 11 C 0.12 1.35 6.18 -3.63 -0.02 1.32 16 12 N -0.62 -9.57 2.22 -165.50 -0.37 -9.94 16 13 C 0.48 9.47 6.72 -10.99 -0.07 9.40 16 14 O -0.50 -12.29 13.54 5.55 0.08 -12.21 16 15 C 0.13 2.63 4.54 -5.19 -0.02 2.61 16 16 N -0.57 -14.11 2.12 -174.61 -0.37 -14.48 16 17 C -0.25 -6.80 9.70 -15.06 -0.15 -6.95 16 18 H 0.07 1.96 7.93 -52.48 -0.42 1.54 16 19 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 20 N -0.89 -25.61 8.59 55.49 0.48 -25.13 16 21 Si 0.90 21.94 29.62 -169.99 -5.04 16.91 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 C 0.17 4.10 5.64 -4.04 -0.02 4.08 16 26 C -0.14 -3.52 8.71 37.16 0.32 -3.19 16 27 H 0.06 0.93 7.26 -51.93 -0.38 0.55 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.71 7.20 -51.93 -0.37 0.34 16 31 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.68 7.25 -51.92 -0.38 0.30 16 37 H 0.10 0.98 5.96 -51.93 -0.31 0.67 16 38 H 0.07 1.31 7.81 -51.93 -0.41 0.90 16 39 H 0.07 1.11 7.54 -51.93 -0.39 0.72 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.09 2.44 5.83 -51.93 -0.30 2.14 16 42 H 0.00 0.01 7.98 -51.93 -0.41 -0.41 16 43 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.02 0.45 6.42 -51.93 -0.33 0.12 16 45 H 0.09 2.65 6.34 -51.93 -0.33 2.32 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.09 361.96 -10.22 -42.31 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.92 Total: 0.90 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.03 Total: -2.15 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.26 Total: -49.55 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.04 Total: 16.91 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.09 -10.22 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368828549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.089 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds