Wall clock time and date at job start Tue Mar 31 2020 14:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08988 * 110.80759 * 2 1 4 4 O 1.43764 * 110.74961 * 236.67701 * 2 1 3 5 5 C 1.36143 * 109.25676 * 269.37538 * 4 2 1 6 6 C 1.39241 * 129.85931 * 161.38557 * 5 4 2 7 7 C 1.38152 * 120.22382 * 179.34907 * 6 5 4 8 8 F 1.35093 * 119.85603 * 180.02562 * 7 6 5 9 9 C 1.38523 * 120.29180 * 359.79368 * 7 6 5 10 10 C 1.38309 * 119.74045 * 0.68168 * 9 7 6 11 11 C 1.37763 * 120.00788 * 359.39638 * 10 9 7 12 12 C 1.51662 * 132.14172 * 179.70637 * 11 10 9 13 13 H 1.08997 * 110.93905 * 313.94586 * 12 11 10 14 14 N 1.46500 * 110.93746 * 77.59235 * 12 11 10 15 15 C 1.34776 * 120.00166 * 273.54993 * 14 12 11 16 16 O 1.21590 * 119.99698 * 359.97438 * 15 14 12 17 17 N 1.34776 * 120.00291 * 180.02562 * 15 14 12 18 18 C 1.46494 * 120.00177 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47072 * 179.97438 * 18 17 15 20 20 C 1.53009 * 109.47165 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.46830 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00543 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99494 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00323 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99894 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47156 * 89.99997 * 25 23 21 27 27 H 1.48503 * 109.47135 * 210.00080 * 25 23 21 28 28 H 1.48500 * 109.47064 * 330.00239 * 25 23 21 29 29 H 1.08998 * 109.47529 * 296.68872 * 1 2 3 30 30 H 1.08995 * 109.46615 * 56.69546 * 1 2 3 31 31 H 1.09002 * 109.47216 * 176.68927 * 1 2 3 32 32 H 1.07997 * 119.89492 * 359.32969 * 6 5 4 33 33 H 1.07999 * 120.12852 * 180.42578 * 9 7 6 34 34 H 1.08002 * 119.99826 * 179.68402 * 10 9 7 35 35 H 0.96996 * 120.00303 * 93.54233 * 14 12 11 36 36 H 0.97007 * 119.99795 * 359.97438 * 17 15 14 37 37 H 1.08997 * 109.47018 * 299.99414 * 18 17 15 38 38 H 1.09004 * 109.47806 * 59.99652 * 18 17 15 39 39 H 1.09003 * 109.47402 * 299.99678 * 19 18 17 40 40 H 1.09002 * 109.47436 * 59.99803 * 19 18 17 41 41 H 1.09008 * 109.46587 * 299.99701 * 20 19 18 42 42 H 1.08993 * 109.47132 * 59.99590 * 20 19 18 43 43 H 0.97000 * 120.00108 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0188 0.0000 4 8 2.0394 -0.7386 -1.1234 5 6 2.2116 -2.0404 -0.7640 6 6 2.3408 -3.1760 -1.5592 7 6 2.5229 -4.4156 -0.9771 8 9 2.6480 -5.5125 -1.7557 9 6 2.5827 -4.5381 0.4014 10 6 2.4451 -3.4149 1.1967 11 6 2.2619 -2.1786 0.6172 12 6 2.0780 -0.7945 1.2091 13 1 1.3542 -0.8123 2.0239 14 7 3.3582 -0.2442 1.6614 15 6 3.8121 -0.5234 2.8993 16 8 3.1587 -1.2317 3.6409 17 7 4.9895 -0.0168 3.3156 18 6 5.4826 -0.3198 4.6614 19 6 6.8295 0.3726 4.8790 20 6 7.3442 0.0566 6.2848 21 6 8.6705 0.7392 6.4993 22 1 9.1033 1.3381 5.7117 23 6 9.3314 0.5991 7.7012 24 7 8.8046 -0.1306 8.6602 25 14 10.9758 1.4445 7.9670 26 1 10.7503 2.7989 8.5327 27 1 11.7971 0.6443 8.9106 28 1 11.6872 1.5625 6.6688 29 1 -0.3634 0.4615 0.9181 30 1 -0.3632 0.5643 -0.8589 31 1 -0.3634 -1.0260 -0.0593 32 1 2.2982 -3.0878 -2.6348 33 1 2.7321 -5.5075 0.8535 34 1 2.4860 -3.5064 2.2721 35 1 3.8792 0.3210 1.0699 36 1 5.5106 0.5486 2.7240 37 1 4.7659 0.0387 5.4001 38 1 5.6069 -1.3974 4.7688 39 1 7.5461 0.0138 4.1402 40 1 6.7056 1.4502 4.7715 41 1 6.6274 0.4159 7.0234 42 1 7.4679 -1.0208 6.3928 43 1 9.2698 -0.2294 9.5057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376717664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:07 Heat of formation + Delta-G solvation = -91.563911 kcal Electronic energy + Delta-G solvation = -26215.065071 eV Core-core repulsion = 22174.832574 eV Total energy + Delta-G solvation = -4040.232497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.24744 -41.91413 -39.65431 -37.69295 -35.72507 -34.79441 -33.37351 -32.29967 -31.14929 -30.77507 -30.28243 -27.10871 -25.97443 -23.47952 -23.18827 -22.25704 -21.90371 -20.87787 -20.39880 -18.54092 -17.90324 -17.52905 -16.82472 -16.75289 -16.36920 -15.99698 -15.68711 -15.52585 -15.04583 -14.85994 -14.60249 -14.39386 -14.14772 -14.00014 -13.85367 -13.27743 -13.05544 -12.94677 -12.53314 -12.41170 -12.29975 -11.84356 -11.74507 -11.61699 -11.42630 -11.33096 -10.91893 -10.75215 -10.60887 -10.22725 -9.88502 -9.48750 -9.42202 -9.21329 -9.14379 -8.71469 -8.63450 -8.38646 -6.03297 -4.06431 0.69415 0.90012 2.57219 2.62393 3.19005 3.28642 3.29685 3.36225 3.38977 3.83833 4.05600 4.09267 4.23575 4.40600 4.43399 4.54197 4.66817 4.67361 4.69566 5.08958 5.16658 5.29514 5.32571 5.33526 5.58783 5.63503 5.66518 5.70637 5.77721 5.89253 6.05316 6.13653 6.17119 6.21817 6.46822 6.59085 6.69736 6.72285 6.96633 6.99300 7.61945 7.74521 7.95443 8.03176 8.36287 8.63370 9.00256 9.57846 11.07998 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018461 B = 0.002188 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.370820 B =12791.634270 C =13575.158995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.071 3.929 3 H 0.126 0.874 4 O -0.293 6.293 5 C 0.142 3.858 6 C -0.183 4.183 7 C 0.139 3.861 8 F -0.134 7.134 9 C -0.184 4.184 10 C -0.016 4.016 11 C -0.196 4.196 12 C 0.184 3.816 13 H 0.117 0.883 14 N -0.741 5.741 15 C 0.703 3.297 16 O -0.589 6.589 17 N -0.739 5.739 18 C 0.135 3.865 19 C -0.121 4.121 20 C 0.024 3.976 21 C -0.523 4.523 22 H 0.055 0.945 23 C 0.057 3.943 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.397 0.603 36 H 0.394 0.606 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 -2.253 -21.894 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 H 0.143 0.857 4 O -0.206 6.206 5 C 0.096 3.904 6 C -0.203 4.203 7 C 0.120 3.880 8 F -0.112 7.112 9 C -0.203 4.203 10 C -0.035 4.035 11 C -0.199 4.199 12 C 0.077 3.923 13 H 0.135 0.865 14 N -0.396 5.396 15 C 0.403 3.597 16 O -0.467 6.467 17 N -0.393 5.393 18 C 0.012 3.988 19 C -0.159 4.159 20 C -0.013 4.013 21 C -0.561 4.561 22 H 0.073 0.927 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.232 0.768 36 H 0.228 0.772 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.385 -2.883 -21.206 28.213 hybrid contribution 1.538 0.743 -0.367 1.747 sum -16.847 -2.140 -21.572 27.455 Atomic orbital electron populations 1.22183 0.92584 1.03869 1.03883 1.23711 0.95678 0.96556 0.82564 0.85654 1.86929 1.79751 1.16173 1.37797 1.19083 0.94365 0.84829 0.92169 1.19951 1.10871 0.88628 1.00826 1.17166 1.00137 0.82264 0.88459 1.91521 1.93137 1.51719 1.74844 1.21111 1.07186 1.00638 0.91403 1.20360 0.92625 0.89516 1.00998 1.21131 1.08978 0.96213 0.93546 1.20779 0.86564 0.87954 0.96956 0.86549 1.45099 1.23265 1.55933 1.15349 1.15973 0.81824 0.80522 0.81340 1.90909 1.58466 1.42321 1.54967 1.45401 1.20981 1.54530 1.18386 1.21532 0.96427 1.00495 0.80330 1.21897 0.93014 0.99129 1.01823 1.19026 0.95868 0.97312 0.89134 1.21198 1.04819 1.30695 0.99375 0.92664 1.25029 0.97910 0.95375 0.96147 1.69962 1.38900 1.39425 1.04982 0.86584 0.83839 0.79465 0.78037 1.20654 1.21192 1.19902 0.89942 0.90623 0.91354 0.84204 0.84030 0.83902 0.76811 0.77240 0.91855 0.91908 0.92761 0.92754 0.96251 0.96242 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 9.51 37.16 0.35 -0.54 16 2 C 0.07 0.49 3.93 -25.83 -0.10 0.39 16 3 H 0.13 0.61 8.05 -51.94 -0.42 0.19 16 4 O -0.29 -2.67 10.82 -20.19 -0.22 -2.89 16 5 C 0.14 1.42 6.91 -38.96 -0.27 1.15 16 6 C -0.18 -1.78 10.04 -39.24 -0.39 -2.18 16 7 C 0.14 1.41 7.28 -39.51 -0.29 1.13 16 8 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 9 C -0.18 -1.84 10.04 -39.45 -0.40 -2.23 16 10 C -0.02 -0.18 10.03 -39.73 -0.40 -0.58 16 11 C -0.20 -2.06 5.92 -104.08 -0.62 -2.68 16 12 C 0.18 1.72 2.93 -67.71 -0.20 1.52 16 13 H 0.12 1.17 7.50 -51.93 -0.39 0.78 16 14 N -0.74 -7.47 5.18 -58.46 -0.30 -7.77 16 15 C 0.70 9.92 8.56 -86.92 -0.74 9.18 16 16 O -0.59 -10.45 16.08 5.29 0.09 -10.36 16 17 N -0.74 -10.15 5.56 -65.23 -0.36 -10.51 16 18 C 0.14 2.32 5.67 -4.04 -0.02 2.30 16 19 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 20 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 21 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 25 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.40 3.02 8.59 -40.82 -0.35 2.67 16 36 H 0.39 4.31 8.49 -40.82 -0.35 3.97 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -32.92 370.74 -9.34 -42.26 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.12 Total: 2.44 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -3.77 Total: -7.80 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.07 Total: -44.23 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.13 Total: -13.25 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.92 -9.34 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376717664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.302 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds