Wall clock time and date at job start Tue Mar 31 2020 14:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.66421 * 2 1 4 4 O 1.43758 * 110.74815 * 236.58571 * 2 1 3 5 5 C 1.36136 * 109.28726 * 269.23387 * 4 2 1 6 6 C 1.39248 * 129.85214 * 161.44389 * 5 4 2 7 7 C 1.38151 * 120.22806 * 179.59879 * 6 5 4 8 8 F 1.35090 * 119.85411 * 179.97438 * 7 6 5 9 9 C 1.38516 * 120.29117 * 359.97438 * 7 6 5 10 10 C 1.38307 * 119.74426 * 0.17060 * 9 7 6 11 11 C 1.37695 * 120.03412 * 0.03168 * 10 9 7 12 12 C 1.51655 * 132.20614 * 179.60195 * 11 10 9 13 13 H 1.09002 * 110.94439 * 77.53998 * 12 11 10 14 14 N 1.46494 * 110.94367 * 313.88194 * 12 11 10 15 15 C 1.34775 * 120.00226 * 89.42364 * 14 12 11 16 16 O 1.21589 * 120.00115 * 359.97438 * 15 14 12 17 17 N 1.34782 * 120.00053 * 180.02562 * 15 14 12 18 18 C 1.46502 * 119.99813 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47135 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47114 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47243 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99754 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00077 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00267 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47275 * 120.00141 * 25 23 21 28 28 H 1.48500 * 109.46928 * 240.00116 * 25 23 21 29 29 H 1.09002 * 109.47201 * 296.78818 * 1 2 3 30 30 H 1.08998 * 109.46819 * 56.79491 * 1 2 3 31 31 H 1.09003 * 109.46719 * 176.79477 * 1 2 3 32 32 H 1.08006 * 119.89107 * 359.57622 * 6 5 4 33 33 H 1.08002 * 120.13011 * 180.19883 * 9 7 6 34 34 H 1.07994 * 119.99970 * 179.97438 * 10 9 7 35 35 H 0.97005 * 120.00004 * 269.42337 * 14 12 11 36 36 H 0.96991 * 120.00377 * 0.02562 * 17 15 14 37 37 H 1.08999 * 109.47431 * 300.00081 * 18 17 15 38 38 H 1.09002 * 109.47014 * 60.00373 * 18 17 15 39 39 H 1.08999 * 109.47294 * 300.00491 * 19 18 17 40 40 H 1.09002 * 109.46598 * 60.00445 * 19 18 17 41 41 H 1.08999 * 109.47515 * 300.00446 * 20 19 18 42 42 H 1.09002 * 109.46952 * 60.00751 * 20 19 18 43 43 H 0.96998 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 8 2.0393 -0.7403 -1.1221 5 6 2.2146 -2.0410 -0.7605 6 6 2.3462 -3.1778 -1.5539 7 6 2.5263 -4.4166 -0.9696 8 9 2.6525 -5.5146 -1.7465 9 6 2.5781 -4.5380 0.4093 10 6 2.4450 -3.4128 1.2025 11 6 2.2613 -2.1779 0.6218 12 6 2.0794 -0.7922 1.2105 13 1 3.0327 -0.3827 1.5448 14 7 1.1079 -0.8123 2.3068 15 6 1.5207 -1.0427 3.5689 16 8 2.6994 -1.2343 3.7976 17 7 0.6268 -1.0617 4.5774 18 6 1.0755 -1.3126 5.9493 19 6 -0.1280 -1.2802 6.8935 20 6 0.3405 -1.5429 8.3261 21 6 -0.8448 -1.5104 9.2562 22 1 -1.8335 -1.3216 8.8646 23 6 -0.6671 -1.7215 10.6070 24 7 0.5368 -1.9509 11.0840 25 14 -2.1365 -1.6819 11.7598 26 1 -3.3701 -1.4072 10.9801 27 1 -2.2652 -2.9941 12.4430 28 1 -1.9423 -0.6134 12.7726 29 1 -0.3634 0.4632 0.9174 30 1 -0.3633 0.5628 -0.8599 31 1 -0.3633 -1.0261 -0.0575 32 1 2.3068 -3.0908 -2.6297 33 1 2.7222 -5.5073 0.8632 34 1 2.4844 -3.5027 2.2780 35 1 0.1675 -0.6598 2.1243 36 1 -0.3137 -0.9099 4.3949 37 1 1.5530 -2.2910 6.0022 38 1 1.7892 -0.5435 6.2445 39 1 -0.6052 -0.3016 6.8405 40 1 -0.8421 -2.0491 6.5984 41 1 0.8174 -2.5216 8.3787 42 1 1.0547 -0.7743 8.6214 43 1 0.6617 -2.0998 12.0343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376717667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:11 Heat of formation + Delta-G solvation = -85.640254 kcal Electronic energy + Delta-G solvation = -26295.007751 eV Core-core repulsion = 22255.032123 eV Total energy + Delta-G solvation = -4039.975628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.25175 -41.94750 -39.72221 -37.71496 -35.87923 -35.02232 -33.37681 -31.90429 -31.12216 -30.89771 -30.22276 -27.17220 -26.32855 -23.55280 -23.27775 -22.16835 -21.71423 -20.83951 -20.40610 -18.64951 -17.97868 -17.53282 -17.04949 -16.72257 -16.36578 -15.88509 -15.73773 -15.50172 -15.07225 -14.97967 -14.48950 -14.33041 -14.22615 -13.97746 -13.75880 -13.42794 -13.22431 -12.93281 -12.64554 -12.46853 -12.32156 -11.89233 -11.80472 -11.70319 -11.42934 -11.17038 -10.94754 -10.77394 -10.59643 -10.24155 -9.90637 -9.49817 -9.44316 -9.23018 -9.14337 -8.75060 -8.59940 -8.40198 -6.04614 -4.07756 0.70096 0.88188 2.49684 2.66845 3.16881 3.24219 3.27860 3.35577 3.38727 3.80340 4.04441 4.07721 4.20873 4.32109 4.42219 4.50003 4.64431 4.67463 4.72433 5.03418 5.08056 5.26345 5.31377 5.32578 5.55324 5.61589 5.64176 5.69565 5.75583 5.87288 5.99930 6.10802 6.13606 6.24026 6.44009 6.56968 6.67416 6.69790 6.93462 6.97374 7.60805 7.72972 7.94148 7.99393 8.34840 8.60269 8.99168 9.56674 11.06691 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002172 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.080809 B =12885.987537 C =13648.546991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.129 0.871 4 O -0.290 6.290 5 C 0.137 3.863 6 C -0.180 4.180 7 C 0.137 3.863 8 F -0.134 7.134 9 C -0.182 4.182 10 C -0.018 4.018 11 C -0.193 4.193 12 C 0.185 3.815 13 H 0.120 0.880 14 N -0.741 5.741 15 C 0.700 3.300 16 O -0.587 6.587 17 N -0.739 5.739 18 C 0.135 3.865 19 C -0.120 4.120 20 C 0.024 3.976 21 C -0.522 4.522 22 H 0.056 0.944 23 C 0.056 3.944 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.398 0.602 36 H 0.394 0.606 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 1.635 -27.407 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.017 3.983 3 H 0.147 0.853 4 O -0.203 6.203 5 C 0.091 3.909 6 C -0.200 4.200 7 C 0.117 3.883 8 F -0.112 7.112 9 C -0.201 4.201 10 C -0.037 4.037 11 C -0.195 4.195 12 C 0.078 3.922 13 H 0.137 0.863 14 N -0.400 5.400 15 C 0.400 3.600 16 O -0.465 6.465 17 N -0.393 5.393 18 C 0.012 3.988 19 C -0.158 4.158 20 C -0.014 4.014 21 C -0.560 4.560 22 H 0.074 0.926 23 C -0.145 4.145 24 N -0.532 5.532 25 Si 0.720 3.280 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.236 0.764 36 H 0.227 0.773 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.872 1.511 -27.221 27.327 hybrid contribution -1.615 -0.096 0.562 1.713 sum 0.257 1.415 -26.658 26.697 Atomic orbital electron populations 1.22257 0.93841 1.03832 1.03731 1.23700 0.95364 0.96649 0.82580 0.85309 1.86944 1.79732 1.16227 1.37377 1.19036 0.94913 0.84890 0.92042 1.19953 1.10629 0.88584 1.00832 1.17143 1.00431 0.82243 0.88450 1.91520 1.93151 1.51625 1.74928 1.21101 1.06989 1.00549 0.91422 1.20226 0.93135 0.89568 1.00745 1.21159 1.08316 0.96497 0.93536 1.20809 0.94329 0.90901 0.86113 0.86272 1.45205 1.10689 1.78822 1.05280 1.16021 0.85581 0.78096 0.80275 1.90943 1.15564 1.56692 1.83261 1.45400 1.09757 1.76537 1.07603 1.21544 0.98408 1.01243 0.77635 1.21893 0.95523 1.00899 0.97522 1.19031 0.96858 0.97416 0.88094 1.21231 0.93869 1.48757 0.92172 0.92615 1.25033 0.95745 0.95280 0.98433 1.69973 1.20976 1.48667 1.13613 0.86532 0.82866 0.77646 0.80911 1.19777 1.20990 1.20990 0.90028 0.90344 0.91268 0.84152 0.84033 0.84387 0.76433 0.77282 0.91861 0.91835 0.92746 0.92758 0.96235 0.96239 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 8.50 37.16 0.32 -0.59 16 2 C 0.07 0.50 4.28 -25.81 -0.11 0.39 16 3 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 4 O -0.29 -2.64 10.81 -20.17 -0.22 -2.86 16 5 C 0.14 1.36 6.92 -38.93 -0.27 1.09 16 6 C -0.18 -1.72 10.04 -39.24 -0.39 -2.11 16 7 C 0.14 1.37 7.28 -39.51 -0.29 1.08 16 8 F -0.13 -1.38 17.26 2.25 0.04 -1.34 16 9 C -0.18 -1.80 10.04 -39.45 -0.40 -2.20 16 10 C -0.02 -0.20 10.03 -39.75 -0.40 -0.60 16 11 C -0.19 -2.01 5.93 -104.07 -0.62 -2.63 16 12 C 0.19 1.73 3.30 -67.69 -0.22 1.51 16 13 H 0.12 1.28 7.63 -51.93 -0.40 0.89 16 14 N -0.74 -6.94 5.01 -58.44 -0.29 -7.24 16 15 C 0.70 9.49 8.57 -86.92 -0.74 8.75 16 16 O -0.59 -10.38 16.03 5.29 0.08 -10.29 16 17 N -0.74 -9.67 5.56 -65.22 -0.36 -10.03 16 18 C 0.13 2.25 5.67 -4.04 -0.02 2.23 16 19 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 20 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 21 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 24 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 25 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.08 0.30 6.64 -51.93 -0.34 -0.04 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.40 2.66 5.95 -40.82 -0.24 2.42 16 36 H 0.39 4.00 8.49 -40.82 -0.35 3.66 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -32.73 366.33 -9.29 -42.03 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.94 Total: 1.95 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -3.84 Total: -8.15 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.08 Total: -43.03 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.13 Total: -13.15 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.73 -9.29 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376717667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.614 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds