Wall clock time and date at job start Tue Mar 31 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.66421 * 2 1 4 4 O 1.43758 * 110.74815 * 236.58571 * 2 1 3 5 5 C 1.36136 * 109.28726 * 269.23387 * 4 2 1 6 6 C 1.39248 * 129.85214 * 161.44389 * 5 4 2 7 7 C 1.38151 * 120.22806 * 179.59879 * 6 5 4 8 8 F 1.35090 * 119.85411 * 179.97438 * 7 6 5 9 9 C 1.38516 * 120.29117 * 359.97438 * 7 6 5 10 10 C 1.38307 * 119.74426 * 0.17060 * 9 7 6 11 11 C 1.37695 * 120.03412 * 0.03168 * 10 9 7 12 12 C 1.51655 * 132.20614 * 179.60195 * 11 10 9 13 13 H 1.09002 * 110.94439 * 77.53998 * 12 11 10 14 14 N 1.46494 * 110.94367 * 313.88194 * 12 11 10 15 15 C 1.34775 * 120.00226 * 89.42364 * 14 12 11 16 16 O 1.21589 * 120.00115 * 359.97438 * 15 14 12 17 17 N 1.34782 * 120.00053 * 180.02562 * 15 14 12 18 18 C 1.46502 * 119.99813 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47135 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47114 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47243 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99754 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00077 * 180.02562 * 21 20 19 24 24 N 1.31515 * 120.00267 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99864 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47275 * 120.00141 * 25 23 21 28 28 H 1.48500 * 109.46928 * 240.00116 * 25 23 21 29 29 H 1.09002 * 109.47201 * 296.78818 * 1 2 3 30 30 H 1.08998 * 109.46819 * 56.79491 * 1 2 3 31 31 H 1.09003 * 109.46719 * 176.79477 * 1 2 3 32 32 H 1.08006 * 119.89107 * 359.57622 * 6 5 4 33 33 H 1.08002 * 120.13011 * 180.19883 * 9 7 6 34 34 H 1.07994 * 119.99970 * 179.97438 * 10 9 7 35 35 H 0.97005 * 120.00004 * 269.42337 * 14 12 11 36 36 H 0.96991 * 120.00377 * 0.02562 * 17 15 14 37 37 H 1.08999 * 109.47431 * 300.00081 * 18 17 15 38 38 H 1.09002 * 109.47014 * 60.00373 * 18 17 15 39 39 H 1.08999 * 109.47294 * 300.00491 * 19 18 17 40 40 H 1.09002 * 109.46598 * 60.00445 * 19 18 17 41 41 H 1.08999 * 109.47515 * 300.00446 * 20 19 18 42 42 H 1.09002 * 109.46952 * 60.00751 * 20 19 18 43 43 H 0.96998 * 119.99681 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 8 2.0393 -0.7403 -1.1221 5 6 2.2146 -2.0410 -0.7605 6 6 2.3462 -3.1778 -1.5539 7 6 2.5263 -4.4166 -0.9696 8 9 2.6525 -5.5146 -1.7465 9 6 2.5781 -4.5380 0.4093 10 6 2.4450 -3.4128 1.2025 11 6 2.2613 -2.1779 0.6218 12 6 2.0794 -0.7922 1.2105 13 1 3.0327 -0.3827 1.5448 14 7 1.1079 -0.8123 2.3068 15 6 1.5207 -1.0427 3.5689 16 8 2.6994 -1.2343 3.7976 17 7 0.6268 -1.0617 4.5774 18 6 1.0755 -1.3126 5.9493 19 6 -0.1280 -1.2802 6.8935 20 6 0.3405 -1.5429 8.3261 21 6 -0.8448 -1.5104 9.2562 22 1 -1.8335 -1.3216 8.8646 23 6 -0.6671 -1.7215 10.6070 24 7 0.5368 -1.9509 11.0840 25 14 -2.1365 -1.6819 11.7598 26 1 -3.3701 -1.4072 10.9801 27 1 -2.2652 -2.9941 12.4430 28 1 -1.9423 -0.6134 12.7726 29 1 -0.3634 0.4632 0.9174 30 1 -0.3633 0.5628 -0.8599 31 1 -0.3633 -1.0261 -0.0575 32 1 2.3068 -3.0908 -2.6297 33 1 2.7222 -5.5073 0.8632 34 1 2.4844 -3.5027 2.2780 35 1 0.1675 -0.6598 2.1243 36 1 -0.3137 -0.9099 4.3949 37 1 1.5530 -2.2910 6.0022 38 1 1.7892 -0.5435 6.2445 39 1 -0.6052 -0.3016 6.8405 40 1 -0.8421 -2.0491 6.5984 41 1 0.8174 -2.5216 8.3787 42 1 1.0547 -0.7743 8.6214 43 1 0.6617 -2.0998 12.0343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376717667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:10 Heat of formation + Delta-G solvation = -106.820270 kcal Electronic energy + Delta-G solvation = -26295.926185 eV Core-core repulsion = 22255.032123 eV Total energy + Delta-G solvation = -4040.894062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.04668 -42.68228 -40.81348 -38.45544 -37.14701 -36.12769 -35.18167 -33.24222 -32.13573 -31.67441 -31.10921 -28.56466 -27.39884 -25.01318 -24.24783 -22.95910 -22.62537 -22.28140 -21.56918 -19.63299 -18.89183 -18.50318 -18.22945 -17.77262 -17.49469 -16.77772 -16.77308 -16.54716 -16.41909 -16.02005 -15.73745 -15.50495 -15.39218 -14.80527 -14.74057 -14.30237 -14.08249 -13.95559 -13.72644 -13.64651 -13.54316 -13.29139 -12.98384 -12.77066 -12.52991 -12.35925 -12.29339 -12.19090 -11.84701 -11.65462 -11.64461 -11.30667 -11.13270 -10.54931 -10.46946 -10.02038 -9.87789 -9.35831 -8.18575 -6.29667 -0.09125 0.10289 1.42467 1.42740 1.55077 1.57557 1.93784 2.08486 2.41482 2.43786 3.12630 3.15552 3.22039 3.33860 3.35720 3.72087 3.79544 3.94273 4.03879 4.17285 4.19490 4.26348 4.35708 4.44707 4.58903 4.68231 4.79736 4.86753 4.96288 4.98661 5.01057 5.06657 5.15778 5.19194 5.21980 5.33929 5.44356 5.47908 5.55795 5.73568 5.86267 5.91926 5.96156 6.24120 6.88233 7.05106 7.40006 7.53954 8.93730 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019951 B = 0.002172 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.080809 B =12885.987537 C =13648.546991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 H 0.153 0.847 4 O -0.294 6.294 5 C 0.137 3.863 6 C -0.179 4.179 7 C 0.132 3.868 8 F -0.136 7.136 9 C -0.183 4.183 10 C -0.032 4.032 11 C -0.203 4.203 12 C 0.181 3.819 13 H 0.103 0.897 14 N -0.718 5.718 15 C 0.701 3.299 16 O -0.631 6.631 17 N -0.728 5.728 18 C 0.150 3.850 19 C -0.100 4.100 20 C 0.023 3.977 21 C -0.538 4.538 22 H 0.067 0.933 23 C -0.004 4.004 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.415 0.585 36 H 0.412 0.588 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.067 0.933 41 H -0.008 1.008 42 H -0.008 1.008 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 2.602 -28.978 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.023 3.977 3 H 0.171 0.829 4 O -0.208 6.208 5 C 0.091 3.909 6 C -0.198 4.198 7 C 0.112 3.888 8 F -0.114 7.114 9 C -0.202 4.202 10 C -0.050 4.050 11 C -0.205 4.205 12 C 0.075 3.925 13 H 0.121 0.879 14 N -0.378 5.378 15 C 0.401 3.599 16 O -0.511 6.511 17 N -0.383 5.383 18 C 0.026 3.974 19 C -0.138 4.138 20 C -0.015 4.015 21 C -0.576 4.576 22 H 0.085 0.915 23 C -0.202 4.202 24 N -0.576 5.576 25 Si 0.791 3.209 26 H -0.181 1.181 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.255 0.745 36 H 0.249 0.751 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.010 0.990 42 H 0.011 0.989 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.480 2.497 -28.849 28.961 hybrid contribution -0.852 -0.396 0.999 1.371 sum -1.332 2.101 -27.851 27.962 Atomic orbital electron populations 1.22281 0.92138 1.03798 1.05235 1.23928 0.96663 0.96831 0.80320 0.82935 1.86944 1.79880 1.15766 1.38193 1.19067 0.94773 0.85408 0.91682 1.20146 1.09712 0.88243 1.01748 1.17191 1.00744 0.82455 0.88401 1.91515 1.93214 1.51769 1.74914 1.21211 1.06567 1.00809 0.91577 1.20156 0.94430 0.90399 1.00052 1.21290 1.08410 0.96658 0.94162 1.20898 0.93903 0.90942 0.86783 0.87912 1.44943 1.11674 1.77370 1.03784 1.16112 0.84824 0.77727 0.81276 1.90923 1.17585 1.58529 1.84101 1.45012 1.10712 1.76462 1.06130 1.21075 0.97152 0.99924 0.79265 1.21583 0.96172 1.02042 0.94034 1.18949 0.95697 0.95002 0.91851 1.21713 0.94914 1.48071 0.92900 0.91495 1.26018 0.98731 0.94901 1.00533 1.70118 1.23459 1.49929 1.14094 0.85383 0.79456 0.77602 0.78495 1.18135 1.20707 1.20650 0.88340 0.89017 0.92050 0.82489 0.82952 0.86024 0.74464 0.75144 0.93483 0.93356 0.91246 0.91406 0.98979 0.98926 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.50 71.98 0.61 -0.63 16 2 C 0.08 0.88 4.28 31.19 0.13 1.02 16 3 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 4 O -0.29 -4.78 10.81 -95.10 -1.03 -5.81 16 5 C 0.14 2.55 6.92 22.69 0.16 2.71 16 6 C -0.18 -3.18 10.04 22.49 0.23 -2.96 16 7 C 0.13 2.53 7.28 22.32 0.16 2.69 16 8 F -0.14 -2.67 17.26 44.97 0.78 -1.89 16 9 C -0.18 -3.60 10.04 22.35 0.22 -3.38 16 10 C -0.03 -0.70 10.03 22.16 0.22 -0.48 16 11 C -0.20 -4.13 5.93 -19.51 -0.12 -4.25 16 12 C 0.18 3.21 3.30 45.15 0.15 3.35 16 13 H 0.10 2.20 7.63 -2.39 -0.02 2.18 16 14 N -0.72 -12.40 5.01 -457.07 -2.29 -14.69 16 15 C 0.70 18.57 8.57 179.05 1.53 20.11 16 16 O -0.63 -22.75 16.03 -4.00 -0.06 -22.81 16 17 N -0.73 -18.17 5.56 -478.52 -2.66 -20.83 16 18 C 0.15 5.04 5.67 86.38 0.49 5.53 16 19 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 20 C 0.02 1.16 4.97 29.85 0.15 1.30 16 21 C -0.54 -29.44 9.11 25.60 0.23 -29.21 16 22 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 23 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 24 N -0.94 -56.66 13.29 21.45 0.28 -56.38 16 25 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 29 H 0.10 0.36 6.64 -2.39 -0.02 0.35 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.41 4.44 5.95 -92.70 -0.55 3.89 16 36 H 0.41 7.32 8.49 -92.71 -0.79 6.54 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 41 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -72.13 366.33 1.55 -70.58 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.29 Total: 14.07 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.80 Total: -7.49 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -4.67 Total: -91.89 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.09 Total: -28.62 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -72.13 1.55 -70.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376717667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.242 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds