Wall clock time and date at job start Tue Mar 31 2020 13:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21633 * 119.99803 * 0.02562 * 14 13 3 16 16 C 1.47267 * 119.99870 * 179.97438 * 14 13 3 17 17 C 1.35210 * 123.13802 * 179.70545 * 16 14 13 18 18 S 1.70942 * 108.82672 * 179.90288 * 17 16 14 19 19 C 1.70770 * 91.12769 * 0.30567 * 18 17 16 20 20 C 1.50705 * 124.72027 * 179.81908 * 19 18 17 21 21 C 1.52996 * 109.46789 * 60.00049 * 20 19 18 22 22 C 1.53005 * 109.46925 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.46999 * 59.99937 * 22 21 20 24 24 C 1.52997 * 109.47369 * 300.00208 * 23 22 21 25 25 C 1.52997 * 109.47309 * 59.99703 * 24 23 22 26 26 N 1.28644 * 110.56003 * 359.82155 * 19 18 17 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.08003 * 125.58844 * 0.02752 * 17 16 14 35 35 H 1.08996 * 109.46853 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.47587 * 299.99751 * 21 20 19 37 37 H 1.08995 * 109.47529 * 60.00536 * 21 20 19 38 38 H 1.09005 * 109.47104 * 300.00205 * 22 21 20 39 39 H 1.08996 * 109.47410 * 179.97438 * 22 21 20 40 40 H 1.09006 * 109.47142 * 179.97438 * 23 22 21 41 41 H 1.09004 * 109.47437 * 59.99931 * 23 22 21 42 42 H 1.09005 * 109.47057 * 299.99930 * 24 23 22 43 43 H 1.09002 * 109.47863 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.47296 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.46876 * 60.00116 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3418 2.6318 0.4318 16 6 0.0454 3.3222 2.6256 17 6 -1.1558 3.9153 2.8085 18 16 -1.2199 4.5547 4.3925 19 6 0.3630 4.0016 4.7161 20 6 1.0910 4.1983 6.0209 21 6 0.3017 3.5337 7.1505 22 6 1.0411 3.7328 8.4751 23 6 1.1799 5.2293 8.7617 24 6 1.9692 5.8939 7.6321 25 6 1.2298 5.6948 6.3075 26 7 0.8475 3.3937 3.6911 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -1.9462 3.9737 2.0747 35 1 2.0816 3.7482 5.9556 36 1 -0.6887 3.9841 7.2156 37 1 0.2032 2.4675 6.9466 38 1 2.0314 3.2820 8.4097 39 1 0.4786 3.2597 9.2800 40 1 1.7063 5.3711 9.7057 41 1 0.1896 5.6801 8.8271 42 1 2.9595 5.4431 7.5667 43 1 2.0685 6.9600 7.8365 44 1 1.7924 6.1679 5.5026 45 1 0.2395 6.1455 6.3729 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412248245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:54 Heat of formation + Delta-G solvation = -29.082892 kcal Electronic energy + Delta-G solvation = -24933.684492 eV Core-core repulsion = 21462.374552 eV Total energy + Delta-G solvation = -3471.309940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28283 -38.94140 -37.92383 -35.03675 -32.56294 -32.28678 -31.09106 -30.85345 -29.35090 -27.20676 -25.37738 -23.61763 -22.91707 -22.64732 -20.99470 -20.45351 -19.62204 -19.13296 -18.29948 -16.75714 -16.02228 -15.56305 -15.26946 -15.07840 -14.98796 -14.51261 -14.50170 -14.24404 -13.93814 -13.38636 -13.05325 -12.77913 -12.67951 -12.66244 -12.51794 -12.04932 -11.84095 -11.49182 -11.46797 -11.46195 -11.21385 -10.96557 -10.88600 -10.79356 -10.61530 -10.49673 -10.29795 -10.14716 -9.77483 -9.61666 -9.57280 -9.20963 -9.00810 -8.77117 -8.47135 -7.77395 -6.09113 -4.17919 0.63465 1.27252 1.68195 2.29123 3.27260 3.33795 3.36824 3.77685 3.98535 4.20838 4.38853 4.43083 4.44544 4.61547 4.90787 4.91918 5.06804 5.15413 5.16452 5.16632 5.22261 5.33315 5.38038 5.49781 5.61827 5.71294 5.78192 5.79560 5.80450 5.89685 5.99445 6.10564 6.13609 6.41915 6.49007 6.68606 7.08017 7.21009 7.38447 7.45703 7.54263 7.67735 7.80027 7.94268 8.20374 8.71812 8.80191 9.13747 9.48954 10.96425 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.003220 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.744344 B = 8692.842529 C = 9892.523905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.575 3.425 15 O -0.545 6.545 16 C 0.024 3.976 17 C -0.233 4.233 18 S 0.181 5.819 19 C 0.032 3.968 20 C -0.010 4.010 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.114 4.114 26 N -0.437 5.437 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.264 0.736 33 H 0.397 0.603 34 H 0.187 0.813 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 9.745 21.670 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.331 5.331 14 C 0.356 3.644 15 O -0.424 6.424 16 C -0.111 4.111 17 C -0.375 4.375 18 S 0.437 5.563 19 C -0.248 4.248 20 C -0.032 4.032 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.153 4.153 26 N -0.152 5.152 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.204 0.796 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.912 9.898 21.330 24.810 hybrid contribution 1.487 -0.534 -0.764 1.755 sum -6.425 9.364 20.567 23.494 Atomic orbital electron populations 1.21844 0.98394 0.98077 1.01174 1.21936 0.92595 0.99695 1.02382 1.18865 0.94389 0.89251 0.80771 0.93168 1.21238 0.90632 1.38924 1.06291 0.91997 1.24878 0.98637 0.94813 0.95328 1.69893 1.35108 1.37704 1.09366 0.86444 0.84866 0.78480 0.77312 1.20527 1.21087 1.19834 1.46391 1.14042 1.53989 1.18724 1.17056 0.83402 0.79273 0.84651 1.90780 1.51946 1.60876 1.38772 1.20925 0.91152 1.03528 0.95447 1.26559 1.03267 1.05232 1.02397 1.82551 1.15555 1.52491 1.05691 1.27110 0.96626 1.01574 0.99486 1.19861 0.99419 0.97257 0.86649 1.21672 0.98740 1.01101 0.93721 1.21521 1.00964 0.96464 0.96582 1.21574 1.00553 0.95571 0.98224 1.21519 0.99266 1.00726 0.94025 1.21676 1.01369 0.94063 0.98144 1.66963 1.33431 1.15936 0.98887 0.94420 0.95777 0.93086 0.94953 0.88144 0.92584 0.76885 0.79582 0.87892 0.91536 0.91170 0.91511 0.91602 0.91902 0.91903 0.91515 0.91593 0.91136 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.21 5.45 -26.73 -0.15 -3.35 16 3 C 0.27 7.04 2.24 -69.08 -0.15 6.89 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.54 8.73 -34.44 -0.30 -14.85 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.10 11.29 55.43 0.63 -24.48 16 9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.69 -15.65 5.02 -56.06 -0.28 -15.93 16 14 C 0.57 12.58 6.36 -12.59 -0.08 12.50 16 15 O -0.54 -13.22 13.84 5.25 0.07 -13.14 16 16 C 0.02 0.43 6.70 -84.53 -0.57 -0.13 16 17 C -0.23 -3.44 10.62 29.65 0.31 -3.13 16 18 S 0.18 1.95 22.23 -107.50 -2.39 -0.44 16 19 C 0.03 0.40 6.00 -13.61 -0.08 0.32 16 20 C -0.01 -0.09 2.61 -91.77 -0.24 -0.33 16 21 C -0.11 -0.89 5.10 -26.73 -0.14 -1.03 16 22 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 23 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 24 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 25 C -0.11 -0.90 5.10 -26.73 -0.14 -1.04 16 26 N -0.44 -7.12 10.12 -8.51 -0.09 -7.21 16 27 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.40 8.52 8.06 -40.82 -0.33 8.19 16 34 H 0.19 2.59 8.03 -52.48 -0.42 2.17 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.48 7.91 -51.93 -0.41 0.06 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -30.62 368.39 -10.47 -41.09 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.17 Total: 6.53 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.78 Total: -7.99 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.26 Total: -47.62 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.39 Total: -0.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.62 -10.47 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412248245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.010 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds