Wall clock time and date at job start Tue Mar 31 2020 13:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21629 * 120.00377 * 0.02562 * 14 13 3 16 16 C 1.47269 * 119.99854 * 180.02562 * 14 13 3 17 17 C 1.35208 * 123.14192 * 179.70621 * 16 14 13 18 18 S 1.70933 * 108.83126 * 179.90844 * 17 16 14 19 19 C 1.70778 * 91.12805 * 0.30387 * 18 17 16 20 20 C 1.50694 * 124.72190 * 179.82533 * 19 18 17 21 21 C 1.53000 * 109.47472 * 59.99661 * 20 19 18 22 22 C 1.53004 * 109.47439 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.46770 * 59.99933 * 22 21 20 24 24 C 1.52994 * 109.47498 * 300.00196 * 23 22 21 25 25 C 1.52997 * 109.47131 * 299.99927 * 20 19 18 26 26 N 1.28650 * 110.55512 * 359.82098 * 19 18 17 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08004 * 125.58217 * 0.02562 * 17 16 14 35 35 H 1.09003 * 109.47608 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.47404 * 300.00232 * 21 20 19 37 37 H 1.09005 * 109.47322 * 60.00034 * 21 20 19 38 38 H 1.08997 * 109.46718 * 300.00092 * 22 21 20 39 39 H 1.09004 * 109.46929 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.46778 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.46982 * 60.00520 * 23 22 21 42 42 H 1.09009 * 109.46821 * 300.00216 * 24 23 22 43 43 H 1.08999 * 109.47400 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.47146 * 299.99824 * 25 20 19 45 45 H 1.09002 * 109.47670 * 59.99883 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6326 -0.4314 16 6 0.0455 3.3224 -2.6254 17 6 -1.1600 3.9055 -2.8122 18 16 -1.2205 4.5534 -4.3928 19 6 0.3628 4.0011 -4.7162 20 6 1.0907 4.1977 -6.0209 21 6 1.2281 5.6942 -6.3079 22 6 1.9666 5.8938 -7.6330 23 6 1.1771 5.2284 -8.7620 24 6 1.0397 3.7319 -8.4751 25 6 0.3018 3.5322 -7.1504 26 7 0.8476 3.3939 -3.6909 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 -1.9539 3.9555 -2.0816 35 1 2.0816 3.7482 -5.9556 36 1 0.2374 6.1442 -6.3732 37 1 1.7901 6.1684 -5.5033 38 1 2.9572 5.4439 -7.5681 39 1 2.0648 6.9601 -7.8371 40 1 1.7034 5.3702 -9.7060 41 1 0.1864 5.6784 -8.8269 42 1 2.0304 3.2819 -8.4103 43 1 0.4776 3.2578 -9.2797 44 1 0.2039 2.4660 -6.9460 45 1 -0.6890 3.9821 -7.2157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412248248.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:04 Heat of formation + Delta-G solvation = -29.100153 kcal Electronic energy + Delta-G solvation = -24933.954103 eV Core-core repulsion = 21462.643414 eV Total energy + Delta-G solvation = -3471.310689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28309 -38.94297 -37.92457 -35.03740 -32.56342 -32.28626 -31.09338 -30.85357 -29.35069 -27.20654 -25.37771 -23.61839 -22.91602 -22.64788 -20.99484 -20.45310 -19.62201 -19.13275 -18.29966 -16.75773 -16.02277 -15.56317 -15.26623 -15.08425 -14.98583 -14.51310 -14.50203 -14.24335 -13.93827 -13.38536 -13.05433 -12.77892 -12.67963 -12.66248 -12.51941 -12.05227 -11.83842 -11.49003 -11.46777 -11.46274 -11.21840 -10.94090 -10.88542 -10.81708 -10.61520 -10.49701 -10.29774 -10.14821 -9.77504 -9.61003 -9.57301 -9.20845 -9.01659 -8.77147 -8.46585 -7.77488 -6.09119 -4.17912 0.63443 1.27236 1.68183 2.29109 3.27501 3.33835 3.36590 3.77719 3.98532 4.20800 4.38847 4.43089 4.44527 4.61581 4.90752 4.91864 5.06833 5.15443 5.16441 5.16721 5.22287 5.33305 5.38038 5.49773 5.61821 5.71295 5.78221 5.79557 5.80438 5.89728 5.99413 6.10564 6.13604 6.41893 6.48925 6.68561 7.07998 7.20971 7.38478 7.45684 7.54250 7.67723 7.80051 7.94210 8.20382 8.71831 8.80204 9.13747 9.48963 10.96429 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.003220 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.222874 B = 8693.247739 C = 9893.065119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.685 5.685 14 C 0.575 3.425 15 O -0.545 6.545 16 C 0.024 3.976 17 C -0.233 4.233 18 S 0.181 5.819 19 C 0.032 3.968 20 C -0.010 4.010 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.114 4.114 26 N -0.437 5.437 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.398 0.602 34 H 0.187 0.813 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 9.730 -21.678 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.331 5.331 14 C 0.356 3.644 15 O -0.424 6.424 16 C -0.111 4.111 17 C -0.375 4.375 18 S 0.437 5.563 19 C -0.248 4.248 20 C -0.032 4.032 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.152 4.152 26 N -0.152 5.152 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.204 0.796 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.917 9.878 -21.342 24.814 hybrid contribution 1.485 -0.519 0.773 1.752 sum -6.433 9.359 -20.570 23.497 Atomic orbital electron populations 1.21844 0.98397 0.98079 1.01171 1.21933 0.92591 0.99694 1.02383 1.18862 0.94391 0.89255 0.80773 0.93177 1.21238 0.90633 1.38900 1.06310 0.91996 1.24880 0.98641 0.94784 0.95356 1.69897 1.35118 1.37744 1.09318 0.86442 0.84844 0.77600 0.78208 1.20577 1.21074 1.19801 1.46390 1.14037 1.53995 1.18727 1.17056 0.83401 0.79265 0.84657 1.90778 1.51954 1.60888 1.38752 1.20925 0.91047 1.03629 0.95453 1.26558 1.03182 1.05281 1.02442 1.82550 1.15522 1.52203 1.05999 1.27110 0.96695 1.01514 0.99482 1.19858 0.99425 0.97245 0.86651 1.21678 1.01373 0.94064 0.98144 1.21520 0.99271 1.00722 0.94025 1.21573 1.00548 0.95565 0.98229 1.21511 1.00981 0.96463 0.96583 1.21664 0.98752 1.01099 0.93717 1.66965 1.33487 1.15919 0.98846 0.94431 0.93080 0.95773 0.88142 0.94948 0.92586 0.76880 0.79583 0.87890 0.91543 0.91136 0.91514 0.91593 0.91901 0.91898 0.91521 0.91598 0.91167 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.21 5.45 -26.74 -0.15 -3.35 16 3 C 0.27 7.04 2.24 -69.09 -0.15 6.89 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.54 8.73 -34.44 -0.30 -14.84 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.69 -15.65 5.02 -56.06 -0.28 -15.93 16 14 C 0.57 12.58 6.36 -12.59 -0.08 12.50 16 15 O -0.54 -13.22 13.85 5.25 0.07 -13.14 16 16 C 0.02 0.43 6.70 -84.53 -0.57 -0.13 16 17 C -0.23 -3.44 10.62 29.65 0.31 -3.13 16 18 S 0.18 1.95 22.22 -107.50 -2.39 -0.44 16 19 C 0.03 0.40 6.00 -13.61 -0.08 0.32 16 20 C -0.01 -0.09 2.61 -91.78 -0.24 -0.33 16 21 C -0.11 -0.90 5.10 -26.73 -0.14 -1.04 16 22 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 23 C -0.12 -0.71 5.92 -26.74 -0.16 -0.87 16 24 C -0.12 -0.75 5.92 -26.76 -0.16 -0.91 16 25 C -0.11 -0.89 5.09 -26.76 -0.14 -1.03 16 26 N -0.44 -7.12 10.12 -8.51 -0.09 -7.21 16 27 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 28 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.40 8.53 8.06 -40.82 -0.33 8.20 16 34 H 0.19 2.59 8.03 -52.48 -0.42 2.17 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.48 7.91 -51.93 -0.41 0.07 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.48 7.91 -51.93 -0.41 0.06 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -30.61 368.38 -10.47 -41.09 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.17 Total: 6.54 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.78 Total: -7.99 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.26 Total: -47.62 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.39 Total: -0.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.61 -10.47 -41.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412248248.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.987 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds