Wall clock time and date at job start Tue Mar 31 2020 13:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47010 * 2 1 4 4 H 1.08997 * 109.79199 * 179.39691 * 3 2 1 5 5 C 1.52445 * 110.01771 * 58.72244 * 3 2 1 6 6 C 1.39123 * 123.57456 * 48.51690 * 5 3 2 7 7 C 1.32930 * 115.64967 * 179.77640 * 6 5 3 8 8 S 1.75718 * 109.58869 * 0.36065 * 7 6 5 9 9 C 1.34648 * 122.61710 * 229.07714 * 5 3 2 10 10 C 1.51402 * 125.10019 * 0.07377 * 9 5 3 11 11 C 1.53187 * 109.06587 * 342.11910 * 10 9 5 12 12 N 1.46968 * 109.79921 * 300.20651 * 3 2 1 13 13 C 1.34771 * 120.86654 * 344.70367 * 12 3 2 14 14 O 1.21282 * 120.00557 * 354.16552 * 13 12 3 15 15 C 1.50705 * 119.99924 * 174.16196 * 13 12 3 16 16 H 1.09003 * 109.47074 * 320.00712 * 15 13 12 17 17 N 1.46906 * 109.47241 * 200.00179 * 15 13 12 18 18 C 1.52996 * 109.46925 * 80.00479 * 15 13 12 19 19 C 1.53007 * 109.47279 * 185.00170 * 18 15 13 20 20 C 1.50694 * 109.47320 * 179.97438 * 19 18 15 21 21 H 1.08005 * 119.99948 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00339 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00372 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99474 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47301 * 90.00053 * 24 22 20 26 26 H 1.48504 * 109.47055 * 209.99695 * 24 22 20 27 27 H 1.48495 * 109.47286 * 329.99458 * 24 22 20 28 28 H 1.08996 * 109.47604 * 292.29508 * 1 2 3 29 29 H 1.08999 * 109.46964 * 52.30232 * 1 2 3 30 30 H 1.09010 * 109.47202 * 172.29643 * 1 2 3 31 31 H 1.09004 * 109.47154 * 239.99436 * 2 1 3 32 32 H 1.09008 * 109.46524 * 119.99790 * 2 1 3 33 33 H 1.07997 * 122.17964 * 0.05137 * 6 5 3 34 34 H 1.08000 * 125.20370 * 180.33385 * 7 6 5 35 35 H 1.08996 * 109.53527 * 101.99731 * 10 9 5 36 36 H 1.08996 * 109.53812 * 222.16317 * 10 9 5 37 37 H 1.09005 * 109.61471 * 165.26749 * 11 10 9 38 38 H 1.08994 * 109.62610 * 285.63197 * 11 10 9 39 39 H 1.00895 * 111.00236 * 299.99960 * 17 15 13 40 40 H 1.00896 * 110.99402 * 63.95687 * 17 15 13 41 41 H 1.08999 * 109.47449 * 304.99610 * 18 15 13 42 42 H 1.09000 * 109.47780 * 65.00104 * 18 15 13 43 43 H 1.09004 * 109.46756 * 299.99711 * 19 18 15 44 44 H 1.08995 * 109.47152 * 59.99944 * 19 18 15 45 45 H 0.97003 * 119.99792 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4486 0.0108 5 6 1.5128 2.1823 1.2242 6 6 1.5773 1.6737 2.5175 7 6 1.0739 2.4541 3.4685 8 16 0.4552 3.9337 2.7503 9 6 0.9284 3.3928 1.1448 10 6 0.7137 4.1736 -0.1345 11 6 1.6325 3.6118 -1.2239 12 7 1.5500 2.1437 -1.1950 13 6 1.0389 1.4592 -2.2375 14 8 1.0751 0.2470 -2.2434 15 6 0.4221 2.2002 -3.3958 16 1 -0.1555 3.0450 -3.0206 17 7 -0.4623 1.2946 -4.1414 18 6 1.5281 2.7099 -4.3220 19 6 0.9114 3.5672 -5.4292 20 6 2.0007 4.0697 -6.3412 21 1 3.0301 3.8046 -6.1499 22 6 1.6834 4.8680 -7.4196 23 7 2.6342 5.3069 -8.2152 24 14 -0.0969 5.3271 -7.7499 25 1 -0.4234 6.5881 -7.0368 26 1 -0.2965 5.5176 -9.2090 27 1 -0.9862 4.2405 -7.2664 28 1 -0.3634 0.3898 0.9508 29 1 -0.3633 0.6284 -0.8131 30 1 -0.3634 -1.0185 -0.1378 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 2.0123 0.7095 2.7353 34 1 1.0486 2.2152 4.5215 35 1 -0.3255 4.0787 -0.4494 36 1 0.9485 5.2242 0.0359 37 1 1.3102 3.9774 -2.1989 38 1 2.6588 3.9271 -1.0357 39 1 0.0501 0.5028 -4.4998 40 1 -1.2377 0.9949 -3.5697 41 1 2.2343 3.3103 -3.7486 42 1 2.0492 1.8621 -4.7667 43 1 0.2051 2.9668 -6.0027 44 1 0.3904 4.4150 -4.9846 45 1 2.4109 5.8689 -8.9737 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424091721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:51 Heat of formation + Delta-G solvation = -8.031166 kcal Electronic energy + Delta-G solvation = -26077.028211 eV Core-core repulsion = 22606.631142 eV Total energy + Delta-G solvation = -3470.397069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08150 -39.51053 -37.16943 -36.58961 -35.00770 -34.36251 -32.37900 -32.25979 -29.82948 -28.44615 -27.19325 -25.26196 -25.04096 -23.13435 -22.63730 -21.86746 -20.32551 -18.94342 -18.85912 -18.48701 -17.69307 -17.39866 -16.83151 -16.36533 -16.20452 -15.96638 -15.72505 -15.34011 -14.99551 -14.72948 -14.45986 -14.31845 -14.27246 -13.96425 -13.69080 -13.60035 -13.41812 -12.96516 -12.86670 -12.74873 -12.56191 -12.41824 -12.24889 -12.00857 -11.83509 -11.81133 -11.72577 -11.62065 -11.55218 -11.21010 -10.69691 -10.48263 -9.74060 -9.52420 -9.47025 -9.22075 -8.22724 -6.25707 0.05922 0.68058 1.06338 1.41297 1.45263 1.53653 1.58891 1.70593 1.92066 2.43476 3.14125 3.39657 3.62299 3.66944 3.80209 3.93603 4.03428 4.11298 4.18969 4.24328 4.26481 4.29438 4.43467 4.50677 4.62821 4.70176 4.76280 4.77071 4.84236 4.87155 4.98835 5.04160 5.12371 5.15841 5.22079 5.31649 5.41198 5.50827 5.53308 5.67287 5.70244 5.76387 6.09537 6.34460 6.37097 6.51842 6.83172 7.14377 7.38949 8.94108 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.003452 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.035333 B = 8108.810456 C = 8889.393824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.207 3.793 4 H 0.082 0.918 5 C -0.121 4.121 6 C -0.130 4.130 7 C -0.213 4.213 8 S 0.101 5.899 9 C -0.183 4.183 10 C -0.063 4.063 11 C 0.101 3.899 12 N -0.603 5.603 13 C 0.494 3.506 14 O -0.554 6.554 15 C 0.082 3.918 16 H 0.113 0.887 17 N -0.817 5.817 18 C -0.080 4.080 19 C 0.004 3.996 20 C -0.529 4.529 21 H 0.029 0.971 22 C 0.003 3.997 23 N -0.955 5.955 24 Si 0.949 3.051 25 H -0.263 1.263 26 H -0.291 1.291 27 H -0.245 1.245 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.187 0.813 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.347 0.653 40 H 0.347 0.653 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.028 0.972 44 H 0.022 0.978 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -5.135 26.498 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.102 3.898 4 H 0.100 0.900 5 C -0.134 4.134 6 C -0.160 4.160 7 C -0.348 4.348 8 S 0.367 5.633 9 C -0.300 4.300 10 C -0.103 4.103 11 C -0.023 4.023 12 N -0.335 5.335 13 C 0.282 3.718 14 O -0.434 6.434 15 C -0.033 4.033 16 H 0.130 0.870 17 N -0.346 5.346 18 C -0.118 4.118 19 C -0.034 4.034 20 C -0.567 4.567 21 H 0.047 0.953 22 C -0.193 4.193 23 N -0.597 5.597 24 Si 0.773 3.227 25 H -0.188 1.188 26 H -0.217 1.217 27 H -0.168 1.168 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.204 0.796 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.131 -3.750 26.481 27.679 hybrid contribution 0.795 -1.592 -0.327 1.810 sum -6.336 -5.342 26.153 27.435 Atomic orbital electron populations 1.21613 0.95793 1.00627 0.99848 1.22000 0.96776 0.93830 1.03317 1.20170 0.97381 0.91659 0.80635 0.90006 1.19822 1.03251 0.94951 0.95364 1.20027 1.03091 1.02109 0.90806 1.25649 1.07055 0.97738 1.04330 1.84173 1.60756 1.20539 0.97821 1.24847 1.06850 0.99441 0.98898 1.20709 1.01015 0.99448 0.89125 1.22034 1.01337 0.78349 1.00588 1.48197 1.61364 1.07683 1.16280 1.22161 0.77266 0.88357 0.84052 1.90605 1.58582 1.14687 1.79524 1.21693 0.95094 0.96413 0.90119 0.86979 1.59035 1.12386 1.23592 1.39598 1.21316 0.95609 0.98787 0.96136 1.19361 0.95209 0.94973 0.93848 1.21553 0.94251 1.30038 1.10828 0.95292 1.25988 1.02096 0.95649 0.95558 1.70083 1.35097 1.36983 1.17499 0.85663 0.80168 0.79859 0.77005 1.18815 1.21738 1.16830 0.93875 0.94365 0.93588 0.89060 0.90946 0.83205 0.79579 0.89494 0.87408 0.87791 0.89466 0.83969 0.84015 0.91422 0.94102 0.95383 0.95934 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.50 71.98 0.61 -2.25 16 2 C -0.12 -2.75 4.88 30.59 0.15 -2.60 16 3 C 0.21 4.52 3.44 44.72 0.15 4.68 16 4 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.12 -2.35 4.35 -19.91 -0.09 -2.44 16 6 C -0.13 -2.13 9.23 21.31 0.20 -1.94 16 7 C -0.21 -3.04 11.20 66.65 0.75 -2.30 16 8 S 0.10 1.60 23.31 -56.49 -1.32 0.28 16 9 C -0.18 -3.42 6.39 25.09 0.16 -3.26 16 10 C -0.06 -1.07 6.43 30.13 0.19 -0.88 16 11 C 0.10 2.03 5.67 86.33 0.49 2.52 16 12 N -0.60 -14.21 2.75 -795.97 -2.19 -16.40 16 13 C 0.49 13.73 5.10 87.66 0.45 14.18 16 14 O -0.55 -17.34 11.05 -3.04 -0.03 -17.37 16 15 C 0.08 2.39 2.29 44.17 0.10 2.49 16 16 H 0.11 2.90 7.08 -2.39 -0.02 2.88 16 17 N -0.82 -23.74 8.44 -171.79 -1.45 -25.19 16 18 C -0.08 -2.94 4.41 30.60 0.13 -2.81 16 19 C 0.00 0.16 3.93 29.85 0.12 0.28 16 20 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 21 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 22 C 0.00 0.19 5.47 84.65 0.46 0.65 16 23 N -0.96 -60.06 13.96 21.45 0.30 -59.76 16 24 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 27 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 28 H 0.04 0.96 7.29 -2.39 -0.02 0.94 16 29 H 0.04 1.01 5.22 -2.39 -0.01 0.99 16 30 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.09 2.54 5.62 -12.73 -0.07 2.47 16 32 H 0.07 1.34 7.43 -2.38 -0.02 1.33 16 33 H 0.15 2.01 7.50 -2.91 -0.02 1.98 16 34 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.10 2.21 4.67 -2.38 -0.01 2.20 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.35 10.53 8.58 -89.70 -0.77 9.76 16 40 H 0.35 8.60 9.06 -89.70 -0.81 7.79 16 41 H 0.07 2.36 6.57 -2.39 -0.02 2.35 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.03 1.30 6.81 -2.39 -0.02 1.28 16 44 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -68.18 355.29 0.65 -67.53 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.67 Total: 28.34 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.13 Total: -23.45 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.34 Total: -101.36 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.03 Total: -17.37 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.28 kcal Total: -68.18 0.65 -67.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424091721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.497 kcal (2) G-P(sol) polarization free energy of solvation -68.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds