Wall clock time and date at job start Tue Mar 31 2020 13:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46798 * 2 1 4 4 H 1.09004 * 109.79122 * 179.39712 * 3 2 1 5 5 C 1.52442 * 110.01590 * 58.72455 * 3 2 1 6 6 C 1.39129 * 123.57706 * 48.51695 * 5 3 2 7 7 C 1.32918 * 115.65061 * 179.77586 * 6 5 3 8 8 S 1.75712 * 109.59202 * 0.35580 * 7 6 5 9 9 C 1.34652 * 122.61941 * 229.07194 * 5 3 2 10 10 C 1.51391 * 125.09852 * 0.07642 * 9 5 3 11 11 C 1.53192 * 109.07077 * 342.11964 * 10 9 5 12 12 N 1.46964 * 109.80384 * 300.20834 * 3 2 1 13 13 C 1.34780 * 120.86744 * 344.70629 * 12 3 2 14 14 O 1.21278 * 119.99862 * 354.14338 * 13 12 3 15 15 C 1.50702 * 119.99955 * 174.14323 * 13 12 3 16 16 H 1.08996 * 109.47473 * 40.00067 * 15 13 12 17 17 N 1.46905 * 109.46996 * 160.00215 * 15 13 12 18 18 C 1.53000 * 109.47014 * 279.99817 * 15 13 12 19 19 C 1.52999 * 109.47229 * 175.00239 * 18 15 13 20 20 C 1.50704 * 109.47354 * 180.02562 * 19 18 15 21 21 H 1.07996 * 119.99696 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99705 * 179.97438 * 20 19 18 23 23 N 1.31504 * 120.00666 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99420 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47240 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47162 * 120.00108 * 24 22 20 27 27 H 1.48504 * 109.46726 * 239.99638 * 24 22 20 28 28 H 1.09001 * 109.46997 * 172.28775 * 1 2 3 29 29 H 1.08994 * 109.47123 * 292.29556 * 1 2 3 30 30 H 1.08997 * 109.46958 * 52.29628 * 1 2 3 31 31 H 1.08998 * 109.47098 * 240.00335 * 2 1 3 32 32 H 1.08993 * 109.47117 * 120.00464 * 2 1 3 33 33 H 1.08001 * 122.17188 * 0.04899 * 6 5 3 34 34 H 1.08004 * 125.20160 * 180.33062 * 7 6 5 35 35 H 1.09003 * 109.53520 * 101.99371 * 10 9 5 36 36 H 1.09000 * 109.54141 * 222.24108 * 10 9 5 37 37 H 1.09002 * 109.62093 * 165.26566 * 11 10 9 38 38 H 1.08995 * 109.62044 * 285.81861 * 11 10 9 39 39 H 1.00903 * 111.00091 * 60.00004 * 17 15 13 40 40 H 1.00894 * 110.99928 * 183.94885 * 17 15 13 41 41 H 1.09003 * 109.47474 * 295.00341 * 18 15 13 42 42 H 1.09004 * 109.46840 * 55.00123 * 18 15 13 43 43 H 1.09003 * 109.46976 * 300.00407 * 19 18 15 44 44 H 1.09001 * 109.47261 * 59.99642 * 19 18 15 45 45 H 0.96996 * 120.00777 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4487 0.0108 5 6 1.5128 2.1823 1.2242 6 6 1.5774 1.6737 2.5176 7 6 1.0740 2.4540 3.4685 8 16 0.4554 3.9336 2.7505 9 6 0.9284 3.3928 1.1449 10 6 0.7137 4.1737 -0.1342 11 6 1.6325 3.6119 -1.2238 12 7 1.5500 2.1439 -1.1950 13 6 1.0388 1.4594 -2.2375 14 8 1.0755 0.2472 -2.2435 15 6 0.4217 2.2005 -3.3955 16 1 1.0193 3.0835 -3.6218 17 7 0.3804 1.3225 -4.5726 18 6 -1.0006 2.6278 -3.0278 19 6 -1.5822 3.4862 -4.1529 20 6 -2.9830 3.9076 -3.7905 21 1 -3.4154 3.5941 -2.8518 22 6 -3.7126 4.6932 -4.6573 23 7 -3.1860 5.0754 -5.8001 24 14 -5.4492 5.2149 -4.2083 25 1 -5.8055 4.6572 -2.8790 26 1 -5.5238 6.6972 -4.1599 27 1 -6.3989 4.7046 -5.2296 28 1 -0.3633 -1.0184 -0.1379 29 1 -0.3633 0.3899 0.9508 30 1 -0.3633 0.6285 -0.8131 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0124 0.7094 2.7352 34 1 1.0487 2.2150 4.5215 35 1 -0.3255 4.0788 -0.4491 36 1 0.9499 5.2241 0.0359 37 1 1.3102 3.9776 -2.1987 38 1 2.6592 3.9245 -1.0337 39 1 -0.1683 0.4960 -4.3881 40 1 0.0301 1.8161 -5.3798 41 1 -1.6213 1.7427 -2.8882 42 1 -0.9790 3.2058 -2.1039 43 1 -0.9616 4.3713 -4.2926 44 1 -1.6038 2.9082 -5.0768 45 1 -3.6990 5.6284 -6.4098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424091726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:06 Heat of formation + Delta-G solvation = 8.614052 kcal Electronic energy + Delta-G solvation = -26336.854319 eV Core-core repulsion = 22867.179040 eV Total energy + Delta-G solvation = -3469.675278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90162 -38.38357 -35.86383 -35.54340 -33.58501 -32.78785 -31.35022 -29.93241 -28.79317 -26.91812 -25.71723 -24.31288 -23.79311 -22.17417 -21.66780 -20.43897 -19.04993 -17.91147 -17.59001 -16.74707 -16.26922 -16.14671 -15.50296 -15.21368 -14.89410 -14.47104 -14.32200 -13.91802 -13.88096 -13.32810 -13.27057 -13.14261 -12.99412 -12.69306 -12.47860 -12.21021 -11.96016 -11.87367 -11.73725 -11.35099 -11.23933 -11.08463 -11.01890 -10.86363 -10.83695 -10.60725 -10.59353 -9.99639 -9.69032 -9.25631 -8.81267 -8.67743 -8.58069 -8.46128 -8.35885 -8.13944 -6.10741 -4.13728 0.92065 1.53264 1.91083 2.57193 2.88083 3.01372 3.24508 3.32972 3.36824 4.37576 4.51902 4.56102 4.78184 4.94349 5.04901 5.10899 5.17125 5.20542 5.25852 5.26123 5.29983 5.45225 5.51499 5.57982 5.67441 5.76405 5.79159 5.89435 5.99853 6.02050 6.10801 6.22954 6.29200 6.39624 6.42409 6.51897 6.57661 6.78905 6.86242 7.39078 7.49551 7.57825 7.63716 7.86393 7.89331 8.28996 8.47053 8.92445 9.51597 11.00110 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.004241 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.748685 B = 6599.883081 C = 7934.475219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.214 3.786 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.220 4.220 8 S 0.091 5.909 9 C -0.161 4.161 10 C -0.071 4.071 11 C 0.112 3.888 12 N -0.612 5.612 13 C 0.534 3.466 14 O -0.523 6.523 15 C 0.071 3.929 16 H 0.096 0.904 17 N -0.830 5.830 18 C -0.138 4.138 19 C 0.025 3.975 20 C -0.522 4.522 21 H 0.054 0.946 22 C 0.060 3.940 23 N -0.892 5.892 24 Si 0.890 3.110 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.345 0.655 40 H 0.354 0.646 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.086 -3.604 15.227 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.109 3.891 4 H 0.097 0.903 5 C -0.130 4.130 6 C -0.147 4.147 7 C -0.356 4.356 8 S 0.357 5.643 9 C -0.279 4.279 10 C -0.111 4.111 11 C -0.013 4.013 12 N -0.346 5.346 13 C 0.323 3.677 14 O -0.399 6.399 15 C -0.044 4.044 16 H 0.114 0.886 17 N -0.362 5.362 18 C -0.177 4.177 19 C -0.012 4.012 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.142 4.142 23 N -0.531 5.531 24 Si 0.718 3.282 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.180 0.820 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.139 -2.912 15.760 20.105 hybrid contribution -1.491 -0.494 0.014 1.571 sum 10.648 -3.406 15.774 19.334 Atomic orbital electron populations 1.21752 0.95279 1.01381 1.00739 1.22137 0.97388 0.93515 1.03444 1.20078 0.96919 0.91796 0.80317 0.90303 1.19832 1.03117 0.94714 0.95317 1.19865 1.02482 1.01131 0.91224 1.25294 1.08400 0.98667 1.03204 1.84234 1.61047 1.20203 0.98813 1.24690 1.05918 0.99293 0.97955 1.20784 1.02186 0.98390 0.89724 1.21802 0.99761 0.79584 1.00163 1.48055 1.63087 1.06782 1.16688 1.20706 0.76297 0.87872 0.82806 1.90562 1.56714 1.13919 1.78695 1.21572 0.97643 0.95348 0.89798 0.88640 1.58764 1.62299 1.09985 1.05167 1.22415 0.92699 1.00813 1.01793 1.19097 0.95698 0.94048 0.92327 1.21196 0.99188 1.31535 1.04126 0.92739 1.24986 0.98200 0.96004 0.94965 1.69945 1.37297 1.36453 1.09448 0.86569 0.84745 0.78361 0.78558 1.19767 1.20926 1.20940 0.93348 0.94331 0.92280 0.86743 0.92913 0.84522 0.82020 0.88722 0.89255 0.87882 0.90648 0.84158 0.83116 0.92761 0.92467 0.96390 0.96433 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.50 37.16 0.32 -1.66 16 2 C -0.13 -1.67 4.88 -26.73 -0.13 -1.80 16 3 C 0.21 2.66 3.44 -67.96 -0.23 2.42 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.12 -1.40 4.35 -104.69 -0.46 -1.86 16 6 C -0.12 -1.23 9.23 -41.09 -0.38 -1.61 16 7 C -0.22 -2.19 11.20 28.89 0.32 -1.87 16 8 S 0.09 0.99 23.31 -107.50 -2.51 -1.52 16 9 C -0.16 -1.95 6.39 -35.24 -0.23 -2.18 16 10 C -0.07 -0.82 6.39 -27.44 -0.18 -1.00 16 11 C 0.11 1.27 5.81 -3.63 -0.02 1.25 16 12 N -0.61 -8.17 2.75 -165.51 -0.46 -8.62 16 13 C 0.53 8.44 5.10 -10.98 -0.06 8.39 16 14 O -0.52 -9.18 11.05 5.56 0.06 -9.12 16 15 C 0.07 1.17 2.37 -68.86 -0.16 1.00 16 16 H 0.10 1.48 6.33 -51.93 -0.33 1.15 16 17 N -0.83 -13.83 8.94 -5.65 -0.05 -13.88 16 18 C -0.14 -2.61 4.68 -26.73 -0.13 -2.74 16 19 C 0.03 0.60 4.74 -27.88 -0.13 0.46 16 20 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 21 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.65 5.46 -17.83 -0.10 1.55 16 23 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 24 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.55 7.29 -51.93 -0.38 0.18 16 30 H 0.06 1.00 5.22 -51.93 -0.27 0.73 16 31 H 0.11 1.72 5.62 -52.58 -0.30 1.42 16 32 H 0.05 0.58 7.42 -51.93 -0.39 0.20 16 33 H 0.14 1.23 7.51 -52.49 -0.39 0.83 16 34 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.09 1.27 6.60 -51.93 -0.34 0.93 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.19 5.44 -51.93 -0.28 0.91 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 40 H 0.35 5.94 7.55 -39.29 -0.30 5.65 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.05 6.09 -51.93 -0.32 0.74 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -29.68 355.33 -10.24 -39.91 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.49 Total: 10.61 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.87 Total: -13.95 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.23 Total: -47.33 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.06 Total: -9.12 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.68 -10.24 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424091726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.528 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds