Wall clock time and date at job start Tue Mar 31 2020 14:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.69516 * 2 1 4 4 C 1.53174 * 109.62943 * 239.83224 * 2 1 3 5 5 N 1.47306 * 107.76086 * 182.13513 * 4 2 1 6 6 C 1.34770 * 121.16676 * 221.87687 * 5 4 2 7 7 O 1.21298 * 120.00362 * 184.02598 * 6 5 4 8 8 C 1.50696 * 120.00092 * 4.02585 * 6 5 4 9 9 H 1.09005 * 109.47172 * 35.12032 * 8 6 5 10 10 N 1.46902 * 109.47517 * 155.12345 * 8 6 5 11 11 C 1.53001 * 109.47179 * 275.12839 * 8 6 5 12 12 C 1.53003 * 109.47349 * 174.99852 * 11 8 6 13 13 C 1.50697 * 109.47311 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00116 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99837 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00152 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47190 * 59.99795 * 17 15 13 19 19 H 1.48500 * 109.47031 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46783 * 300.00195 * 17 15 13 21 21 C 1.40672 * 117.66961 * 41.60883 * 5 4 2 22 22 C 1.38556 * 120.06763 * 166.59131 * 21 5 4 23 23 C 1.38247 * 119.90940 * 179.89732 * 22 21 5 24 24 C 1.38484 * 120.03809 * 359.95212 * 23 22 21 25 25 F 1.35096 * 119.88090 * 180.02562 * 24 23 22 26 26 C 1.38386 * 120.23585 * 0.09397 * 24 23 22 27 27 C 1.38706 * 120.03808 * 359.97438 * 26 24 23 28 28 O 1.35898 * 119.64004 * 179.78523 * 27 26 24 29 29 H 1.09003 * 109.46744 * 299.66132 * 1 2 3 30 30 H 1.08995 * 109.47237 * 59.65634 * 1 2 3 31 31 H 1.08998 * 109.47130 * 179.66178 * 1 2 3 32 32 H 1.08996 * 109.82030 * 62.52167 * 4 2 1 33 33 H 1.09004 * 109.67145 * 301.66812 * 4 2 1 34 34 H 1.00893 * 110.99475 * 60.00264 * 10 8 6 35 35 H 1.00899 * 110.99646 * 183.95767 * 10 8 6 36 36 H 1.09002 * 109.46983 * 294.99263 * 11 8 6 37 37 H 1.08995 * 109.47571 * 54.99615 * 11 8 6 38 38 H 1.09001 * 109.47117 * 299.99710 * 12 11 8 39 39 H 1.09001 * 109.47378 * 59.99558 * 12 11 8 40 40 H 0.96993 * 119.99787 * 180.02562 * 16 15 13 41 41 H 1.08003 * 120.04537 * 359.90019 * 22 21 5 42 42 H 1.08003 * 119.98625 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.98143 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0445 -0.7250 -1.2473 5 7 3.5159 -0.7462 -1.1798 6 6 4.2677 -0.5092 -2.2729 7 8 5.4754 -0.6036 -2.2105 8 6 3.6081 -0.1267 -3.5727 9 1 2.7320 0.4888 -3.3682 10 7 4.5571 0.6312 -4.3991 11 6 3.1794 -1.3919 -4.3187 12 6 2.4000 -1.0030 -5.5766 13 6 1.9783 -2.2491 -6.3116 14 1 2.2397 -3.2213 -5.9206 15 6 1.2579 -2.1481 -7.4829 16 7 0.9392 -0.9642 -7.9589 17 14 0.7346 -3.6928 -8.3937 18 1 -0.1284 -4.5190 -7.5118 19 1 -0.0228 -3.3152 -9.6140 20 1 1.9386 -4.4720 -8.7790 21 6 4.1088 -1.0169 0.0668 22 6 5.4579 -1.3236 0.1419 23 6 6.0377 -1.5870 1.3690 24 6 5.2712 -1.5433 2.5216 25 9 5.8411 -1.8007 3.7191 26 6 3.9232 -1.2383 2.4508 27 6 3.3345 -0.9744 1.2229 28 8 2.0092 -0.6800 1.1624 29 1 -0.3633 0.5086 0.8931 30 1 -0.3633 0.5191 -0.8868 31 1 -0.3633 -1.0276 -0.0061 32 1 1.7230 -0.1933 -2.1428 33 1 1.6602 -1.7449 -1.2636 34 1 5.3784 0.0817 -4.6026 35 1 4.1187 0.9547 -5.2484 36 1 4.0631 -1.9640 -4.6013 37 1 2.5456 -1.9982 -3.6716 38 1 1.5163 -0.4308 -5.2940 39 1 3.0337 -0.3967 -6.2238 40 1 0.4322 -0.8932 -8.7827 41 1 6.0557 -1.3569 -0.7569 42 1 7.0891 -1.8266 1.4290 43 1 3.3294 -1.2050 3.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:44 Heat of formation + Delta-G solvation = -85.129882 kcal Electronic energy + Delta-G solvation = -27531.598290 eV Core-core repulsion = 23491.644793 eV Total energy + Delta-G solvation = -4039.953496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.99303 -41.61788 -39.45675 -37.75738 -35.78121 -35.61755 -32.98940 -32.78681 -30.67068 -30.06230 -29.25298 -27.05609 -26.44462 -24.37684 -23.35136 -23.16218 -21.32177 -20.48813 -19.46156 -18.78864 -17.89450 -17.44495 -16.65376 -16.39967 -16.23986 -15.81400 -15.44324 -15.23943 -14.95368 -14.77876 -14.52118 -14.49994 -13.88931 -13.65827 -13.61685 -13.34014 -13.08342 -13.00000 -12.67212 -12.44136 -12.32246 -12.17896 -11.91685 -11.66859 -11.49348 -11.16861 -10.99416 -10.96923 -10.76044 -10.20046 -10.12097 -9.89763 -9.38887 -9.29203 -8.78039 -8.53088 -8.39930 -7.90959 -6.17427 -4.21149 0.92135 1.08167 2.40283 2.53056 2.81199 3.22891 3.28259 3.30552 3.47848 4.08446 4.18266 4.30901 4.34558 4.51445 4.59986 4.68143 4.84621 4.86606 4.98666 5.04313 5.17823 5.19434 5.26801 5.36209 5.37374 5.49378 5.53139 5.56592 5.81420 5.87741 5.90814 6.07926 6.18872 6.30745 6.34730 6.64183 6.70183 6.99070 7.11194 7.32796 7.38862 7.47845 7.71493 7.78880 8.00257 8.20356 8.84278 9.44521 10.93301 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.003117 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.413687 B = 8982.178583 C = 9561.190232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.081 0.919 4 C 0.064 3.936 5 N -0.556 5.556 6 C 0.533 3.467 7 O -0.511 6.511 8 C 0.077 3.923 9 H 0.100 0.900 10 N -0.830 5.830 11 C -0.140 4.140 12 C 0.027 3.973 13 C -0.527 4.527 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.077 3.923 22 C -0.094 4.094 23 C -0.162 4.162 24 C 0.105 3.895 25 F -0.139 7.139 26 C -0.166 4.166 27 C 0.123 3.877 28 O -0.306 6.306 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.348 0.652 35 H 0.358 0.642 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.183 0.817 42 H 0.139 0.861 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 2.678 17.953 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.018 3.982 3 H 0.099 0.901 4 C -0.058 4.058 5 N -0.281 5.281 6 C 0.324 3.676 7 O -0.386 6.386 8 C -0.038 4.038 9 H 0.117 0.883 10 N -0.363 5.363 11 C -0.179 4.179 12 C -0.010 4.010 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.017 4.017 22 C -0.113 4.113 23 C -0.181 4.181 24 C 0.085 3.915 25 F -0.117 7.117 26 C -0.186 4.186 27 C 0.075 3.925 28 O -0.220 6.220 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.199 0.801 42 H 0.157 0.843 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.452 3.217 18.498 18.935 hybrid contribution -0.480 -1.617 -1.176 2.056 sum 1.973 1.601 17.322 17.508 Atomic orbital electron populations 1.21792 0.90379 1.04209 1.03879 1.22818 0.96614 0.95463 0.83285 0.90098 1.22892 0.78504 1.03748 1.00659 1.45819 1.07284 1.68032 1.06975 1.21168 0.86932 0.74848 0.84612 1.90404 1.14437 1.50095 1.83620 1.21532 0.95291 0.97054 0.89887 0.88274 1.58770 1.09387 1.43276 1.24883 1.22442 1.01150 0.94769 0.99584 1.19087 0.94575 0.97205 0.90172 1.21111 1.35056 0.92675 1.07677 0.92727 1.24998 0.95807 0.96076 0.97272 1.69927 1.38946 1.22622 1.21603 0.86637 0.78813 0.83284 0.79191 1.20168 1.21163 1.20174 1.18126 0.93845 1.05392 0.84344 1.22012 0.93240 0.95975 1.00092 1.21109 1.00997 1.05152 0.90853 1.17277 0.90851 1.02522 0.80864 1.91490 1.84829 1.91727 1.43694 1.20140 0.93417 1.08311 0.96760 1.18114 0.83395 0.99538 0.91463 1.86029 1.19945 1.73552 1.42485 0.90792 0.89368 0.90841 0.86379 0.88740 0.83849 0.82556 0.92247 0.92448 0.96311 0.96289 0.92728 0.80058 0.84280 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.58 37.16 0.36 -0.70 16 2 C 0.08 0.74 3.57 -26.64 -0.10 0.64 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.06 0.72 5.27 -3.51 -0.02 0.70 16 5 N -0.56 -7.72 3.02 -112.52 -0.34 -8.06 16 6 C 0.53 8.39 6.86 -10.99 -0.08 8.32 16 7 O -0.51 -8.97 13.00 5.54 0.07 -8.90 16 8 C 0.08 1.20 2.41 -68.86 -0.17 1.03 16 9 H 0.10 1.40 6.31 -51.93 -0.33 1.07 16 10 N -0.83 -12.98 8.98 -5.65 -0.05 -13.03 16 11 C -0.14 -2.53 4.75 -26.73 -0.13 -2.66 16 12 C 0.03 0.60 4.74 -27.88 -0.13 0.47 16 13 C -0.53 -13.80 9.11 -34.44 -0.31 -14.11 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 17 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.08 1.09 6.34 -83.32 -0.53 0.57 16 22 C -0.09 -1.31 9.03 -39.46 -0.36 -1.67 16 23 C -0.16 -1.97 10.02 -39.49 -0.40 -2.36 16 24 C 0.11 1.27 7.29 -39.44 -0.29 0.99 16 25 F -0.14 -1.67 17.26 2.25 0.04 -1.63 16 26 C -0.17 -1.98 9.95 -39.35 -0.39 -2.37 16 27 C 0.12 1.59 6.52 -39.05 -0.25 1.33 16 28 O -0.31 -3.64 9.97 -19.42 -0.19 -3.83 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.12 1.21 5.69 -51.93 -0.30 0.91 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.35 5.50 8.56 -39.30 -0.34 5.16 16 35 H 0.36 5.60 7.55 -39.29 -0.30 5.30 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.01 7.65 -51.93 -0.40 0.61 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.18 2.78 4.91 -53.57 -0.26 2.52 16 42 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -29.73 353.98 -7.93 -37.66 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.62 Total: 9.42 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.88 Total: -8.29 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.35 Total: -45.34 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.12 Total: -12.73 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.73 -7.93 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.474 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds