Wall clock time and date at job start Tue Mar 31 2020 14:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.58060 * 2 1 4 4 C 1.53527 * 109.68788 * 239.66495 * 2 1 3 5 5 N 1.47572 * 107.31400 * 181.57668 * 4 2 1 6 6 C 1.34782 * 121.27057 * 221.88817 * 5 4 2 7 7 O 1.21294 * 119.99407 * 175.04054 * 6 5 4 8 8 C 1.50693 * 120.00211 * 355.03475 * 6 5 4 9 9 H 1.09000 * 109.47597 * 325.28988 * 8 6 5 10 10 N 1.46904 * 109.47387 * 205.28557 * 8 6 5 11 11 C 1.53003 * 109.46953 * 85.28890 * 8 6 5 12 12 C 1.53000 * 109.47298 * 185.76438 * 11 8 6 13 13 C 1.50693 * 109.47252 * 179.97438 * 12 11 8 14 14 H 1.07997 * 120.00247 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99976 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99972 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47111 * 89.99743 * 17 15 13 19 19 H 1.48493 * 109.47263 * 210.00439 * 17 15 13 20 20 H 1.48504 * 109.47166 * 330.00280 * 17 15 13 21 21 C 1.40665 * 117.55826 * 42.61053 * 5 4 2 22 22 C 1.38553 * 120.06849 * 165.50021 * 21 5 4 23 23 C 1.38260 * 119.91013 * 179.68751 * 22 21 5 24 24 C 1.38482 * 120.03054 * 359.97438 * 23 22 21 25 25 F 1.35101 * 119.87465 * 180.02562 * 24 23 22 26 26 C 1.38390 * 120.24363 * 0.05929 * 24 23 22 27 27 C 1.38698 * 120.03062 * 0.29042 * 26 24 23 28 28 O 1.35902 * 119.64545 * 179.34958 * 27 26 24 29 29 H 1.09003 * 109.47540 * 299.74026 * 1 2 3 30 30 H 1.09002 * 109.47205 * 59.74243 * 1 2 3 31 31 H 1.08996 * 109.47120 * 179.73968 * 1 2 3 32 32 H 1.09000 * 109.83920 * 301.47875 * 4 2 1 33 33 H 1.09000 * 109.83690 * 62.38051 * 4 2 1 34 34 H 1.00890 * 111.00061 * 176.04783 * 10 8 6 35 35 H 1.00898 * 110.99570 * 300.00686 * 10 8 6 36 36 H 1.09002 * 109.46980 * 305.76789 * 11 8 6 37 37 H 1.09004 * 109.47102 * 65.76264 * 11 8 6 38 38 H 1.09002 * 109.47391 * 300.00099 * 12 11 8 39 39 H 1.09004 * 109.47187 * 59.99878 * 12 11 8 40 40 H 0.97002 * 120.00019 * 179.97438 * 16 15 13 41 41 H 1.07995 * 120.04651 * 359.72020 * 22 21 5 42 42 H 1.07996 * 119.98289 * 180.02562 * 23 22 21 43 43 H 1.07998 * 119.98283 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0472 -0.7301 -1.2476 5 7 3.5211 -0.7327 -1.1754 6 6 4.2755 -0.4935 -2.2665 7 8 5.4813 -0.4121 -2.1640 8 6 3.6207 -0.3273 -3.6135 9 1 2.7519 -0.9822 -3.6786 10 7 4.5788 -0.6783 -4.6704 11 6 3.1777 1.1266 -3.7893 12 6 2.3870 1.2649 -5.0918 13 6 1.9501 2.6968 -5.2646 14 1 2.2107 3.4345 -4.5201 15 6 1.2185 3.0653 -6.3737 16 7 0.9016 2.1671 -7.2806 17 14 0.6775 4.8403 -6.5883 18 1 1.7203 5.5888 -7.3350 19 1 -0.5990 4.8806 -7.3458 20 1 0.4813 5.4627 -5.2543 21 6 4.1111 -1.0096 0.0711 22 6 5.4588 -1.3222 0.1471 23 6 6.0368 -1.5875 1.3748 24 6 5.2696 -1.5402 2.5267 25 9 5.8378 -1.7995 3.7247 26 6 3.9231 -1.2291 2.4551 27 6 3.3351 -0.9690 1.2261 28 8 2.0093 -0.6773 1.1635 29 1 -0.3634 0.5098 0.8923 30 1 -0.3634 0.5178 -0.8877 31 1 -0.3633 -1.0276 -0.0047 32 1 1.6677 -1.7518 -1.2623 33 1 1.7242 -0.2027 -2.1452 34 1 4.1448 -0.6371 -5.5802 35 1 5.3938 -0.0848 -4.6312 36 1 2.5477 1.4186 -2.9490 37 1 4.0554 1.7719 -3.8268 38 1 3.0169 0.9730 -5.9321 39 1 1.5093 0.6196 -5.0543 40 1 0.3866 2.4263 -8.0607 41 1 6.0571 -1.3581 -0.7512 42 1 7.0872 -1.8308 1.4355 43 1 3.3288 -1.1930 3.3562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:48 Heat of formation + Delta-G solvation = -88.193663 kcal Electronic energy + Delta-G solvation = -27610.050079 eV Core-core repulsion = 23569.963727 eV Total energy + Delta-G solvation = -4040.086352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.99357 -41.58803 -39.43476 -37.74793 -35.77698 -35.58958 -32.99639 -32.73862 -30.67088 -30.08212 -29.23744 -27.03104 -26.44839 -24.37012 -23.32732 -23.13946 -21.23365 -20.61424 -19.43523 -18.70772 -17.84911 -17.44944 -16.63925 -16.45074 -16.17566 -15.79774 -15.40608 -15.30345 -14.91856 -14.75643 -14.54401 -14.49047 -13.94034 -13.71397 -13.52697 -13.35930 -13.08030 -12.96172 -12.62087 -12.35912 -12.26003 -12.19584 -11.88540 -11.74178 -11.44935 -11.19515 -11.02528 -10.93542 -10.75220 -10.21739 -10.14697 -9.91103 -9.40479 -9.33631 -8.77384 -8.54585 -8.40100 -7.89902 -6.18722 -4.22585 0.91818 1.07890 2.42151 2.51305 2.83690 3.20508 3.27929 3.30119 3.48499 4.13140 4.18357 4.30442 4.33179 4.54095 4.66220 4.70992 4.86360 4.91678 4.97562 5.07581 5.17405 5.20562 5.27727 5.33695 5.40463 5.50537 5.51592 5.61089 5.85876 5.87433 5.91649 6.05112 6.16645 6.29902 6.33314 6.62869 6.68159 6.99941 7.11923 7.32510 7.38252 7.46417 7.71600 7.77577 7.99611 8.18783 8.83140 9.43242 10.91972 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017952 B = 0.003217 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.307398 B = 8702.620398 C = 9570.287115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.083 0.917 4 C 0.064 3.936 5 N -0.559 5.559 6 C 0.533 3.467 7 O -0.511 6.511 8 C 0.077 3.923 9 H 0.100 0.900 10 N -0.830 5.830 11 C -0.140 4.140 12 C 0.026 3.974 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.078 3.922 22 C -0.087 4.087 23 C -0.161 4.161 24 C 0.105 3.895 25 F -0.139 7.139 26 C -0.166 4.166 27 C 0.123 3.877 28 O -0.306 6.306 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.358 0.642 35 H 0.348 0.652 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.175 0.825 42 H 0.139 0.861 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -7.963 15.718 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.019 3.981 3 H 0.101 0.899 4 C -0.059 4.059 5 N -0.284 5.284 6 C 0.324 3.676 7 O -0.385 6.385 8 C -0.038 4.038 9 H 0.118 0.882 10 N -0.363 5.363 11 C -0.180 4.180 12 C -0.011 4.011 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.016 4.016 22 C -0.107 4.107 23 C -0.181 4.181 24 C 0.085 3.915 25 F -0.117 7.117 26 C -0.186 4.186 27 C 0.076 3.924 28 O -0.221 6.221 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.192 0.808 42 H 0.157 0.843 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.519 -8.677 16.007 18.381 hybrid contribution -0.469 1.995 -0.464 2.101 sum 2.050 -6.682 15.543 17.042 Atomic orbital electron populations 1.21798 0.90336 1.03957 1.04169 1.22874 0.96632 0.95631 0.83000 0.89900 1.22986 0.78403 1.03300 1.01181 1.45930 1.07297 1.68149 1.07020 1.21172 0.86952 0.74015 0.85457 1.90486 1.14526 1.48305 1.85208 1.21526 0.95326 0.99005 0.87958 0.88205 1.58758 1.09582 1.61033 1.06908 1.22472 1.01085 0.92123 1.02320 1.19099 0.94517 0.97527 0.89972 1.21139 1.34437 0.94290 1.06627 0.92686 1.25001 0.95861 0.97489 0.95812 1.69937 1.38725 1.33506 1.10847 0.86585 0.78179 0.84932 0.78289 1.20568 1.21090 1.19844 1.18090 0.93923 1.05113 0.84495 1.21666 0.93182 0.96171 0.99665 1.21065 1.00962 1.05240 0.90824 1.17256 0.90861 1.02529 0.80840 1.91491 1.84907 1.91685 1.43640 1.20150 0.93443 1.08244 0.96753 1.18110 0.83502 0.99417 0.91401 1.86022 1.19803 1.73649 1.42576 0.90766 0.89115 0.91047 0.89018 0.86099 0.82564 0.83880 0.92579 0.92195 0.96253 0.96253 0.92768 0.80847 0.84270 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.59 37.15 0.36 -0.81 16 2 C 0.08 0.80 3.57 -26.46 -0.09 0.71 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.06 0.71 5.43 -3.18 -0.02 0.70 16 5 N -0.56 -7.79 3.01 -112.11 -0.34 -8.13 16 6 C 0.53 8.43 6.81 -10.99 -0.07 8.35 16 7 O -0.51 -9.05 13.17 5.55 0.07 -8.97 16 8 C 0.08 1.20 2.35 -68.86 -0.16 1.04 16 9 H 0.10 1.44 7.02 -51.93 -0.36 1.08 16 10 N -0.83 -12.99 8.99 -5.65 -0.05 -13.04 16 11 C -0.14 -2.52 4.47 -26.73 -0.12 -2.64 16 12 C 0.03 0.58 4.75 -27.89 -0.13 0.45 16 13 C -0.53 -13.64 9.11 -34.44 -0.31 -13.96 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 17 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.08 1.11 6.33 -83.32 -0.53 0.58 16 22 C -0.09 -1.21 8.94 -39.46 -0.35 -1.56 16 23 C -0.16 -1.95 10.02 -39.48 -0.40 -2.34 16 24 C 0.11 1.27 7.29 -39.44 -0.29 0.99 16 25 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 26 C -0.17 -1.98 9.95 -39.36 -0.39 -2.37 16 27 C 0.12 1.61 6.52 -39.05 -0.25 1.36 16 28 O -0.31 -3.72 9.97 -19.43 -0.19 -3.92 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.12 1.34 5.08 -51.93 -0.26 1.08 16 34 H 0.36 5.61 7.58 -39.30 -0.30 5.31 16 35 H 0.35 5.50 8.55 -39.29 -0.34 5.16 16 36 H 0.06 0.96 6.97 -51.93 -0.36 0.59 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.02 0.45 6.89 -51.93 -0.36 0.10 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.17 2.63 5.17 -52.55 -0.27 2.36 16 42 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -29.45 353.54 -7.89 -37.34 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.60 Total: 9.72 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.86 Total: -8.01 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.35 Total: -45.28 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.12 Total: -12.89 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.45 -7.89 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.852 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds