Wall clock time and date at job start Tue Mar 31 2020 13:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46840 * 2 1 4 4 N 1.46500 * 109.47004 * 119.99501 * 2 1 3 5 5 C 1.46498 * 119.99650 * 114.16153 * 4 2 1 6 6 C 1.50699 * 109.47431 * 274.34748 * 5 4 2 7 7 C 1.33391 * 125.20531 * 95.20450 * 6 5 4 8 8 C 1.38420 * 114.92089 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92541 * 0.02562 * 8 7 6 10 10 S 1.75887 * 125.20130 * 274.90089 * 6 5 4 11 11 C 1.34771 * 120.00361 * 294.16581 * 4 2 1 12 12 O 1.21587 * 119.99855 * 186.15454 * 11 4 2 13 13 N 1.34772 * 120.00074 * 6.15362 * 11 4 2 14 14 C 1.46501 * 120.00095 * 184.16307 * 13 11 4 15 15 C 1.53008 * 109.47130 * 184.96233 * 14 13 11 16 16 C 1.50693 * 115.54921 * 56.09453 * 15 14 13 17 17 H 1.08003 * 119.99611 * 211.27663 * 16 15 14 18 18 C 1.37878 * 120.00451 * 30.99422 * 16 15 14 19 19 N 1.31518 * 119.99700 * 1.84574 * 18 16 15 20 20 Si 1.86791 * 120.00287 * 181.84067 * 18 16 15 21 21 H 1.48497 * 109.47174 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47224 * 120.00272 * 20 18 16 23 23 H 1.48500 * 109.47628 * 240.00453 * 20 18 16 24 24 C 1.53000 * 117.49474 * 201.76442 * 15 14 13 25 25 C 1.53000 * 117.49556 * 270.42250 * 15 14 13 26 26 H 1.08996 * 109.46832 * 301.67932 * 1 2 3 27 27 H 1.08996 * 109.46734 * 61.67873 * 1 2 3 28 28 H 1.08994 * 109.46763 * 181.68062 * 1 2 3 29 29 H 1.08992 * 109.46959 * 240.00002 * 2 1 3 30 30 H 1.09005 * 109.47164 * 172.66208 * 3 2 1 31 31 H 1.08994 * 109.47228 * 292.66410 * 3 2 1 32 32 H 1.08998 * 109.47234 * 52.66595 * 3 2 1 33 33 H 1.09009 * 109.47348 * 34.34839 * 5 4 2 34 34 H 1.09003 * 109.47409 * 154.34446 * 5 4 2 35 35 H 1.08002 * 122.53757 * 359.96603 * 7 6 5 36 36 H 1.08003 * 122.53745 * 180.02562 * 8 7 6 37 37 H 1.07992 * 125.20701 * 180.02562 * 9 8 7 38 38 H 0.97007 * 120.00216 * 4.15780 * 13 11 4 39 39 H 1.09002 * 109.47337 * 64.96165 * 14 13 11 40 40 H 1.09003 * 109.46977 * 304.96212 * 14 13 11 41 41 H 0.96995 * 119.99935 * 184.97562 * 19 18 16 42 42 H 1.09003 * 117.49488 * 215.00278 * 24 15 14 43 43 H 1.08994 * 117.50122 * 0.02562 * 24 15 14 44 44 H 1.09000 * 117.49908 * 359.97438 * 25 15 14 45 45 H 1.08997 * 117.49714 * 144.98020 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.7521 -1.9518 1.0657 6 6 1.7748 -3.0968 0.9970 7 6 1.3184 -3.6520 -0.1267 8 6 0.4259 -4.6938 0.0581 9 6 0.1571 -4.9844 1.3319 10 16 1.0671 -3.9105 2.3866 11 6 1.7925 -0.1656 2.4168 12 8 2.2920 -0.6769 3.4004 13 7 1.0131 0.9261 2.5471 14 6 0.8411 1.5508 3.8611 15 6 -0.1799 2.6856 3.7566 16 6 -1.5291 2.2976 3.2088 17 1 -2.1070 3.0118 2.6410 18 6 -2.0231 1.0291 3.4274 19 7 -1.3332 0.1693 4.1447 20 14 -3.6722 0.5317 2.7049 21 1 -4.2434 1.6718 1.9439 22 1 -3.4847 -0.6263 1.7942 23 1 -4.5995 0.1539 3.8015 24 6 -0.1402 3.7728 4.8324 25 6 0.3471 4.0806 3.4143 26 1 -0.3633 0.5397 0.8745 27 1 -0.3633 0.4875 -0.9046 28 1 -0.3632 -1.0272 0.0301 29 1 1.8933 -0.5138 -0.8899 30 1 3.1221 1.4454 0.1313 31 1 1.7878 1.9171 -0.9483 32 1 1.5735 1.9928 0.8171 33 1 3.3517 -1.9308 0.1555 34 1 3.4055 -2.0830 1.9282 35 1 1.6221 -3.3142 -1.1065 36 1 -0.0190 -5.2308 -0.7666 37 1 -0.5128 -5.7633 1.6648 38 1 0.5659 1.2984 1.7709 39 1 1.7962 1.9515 4.2007 40 1 0.4854 0.8065 4.5735 41 1 -1.6450 -0.7443 4.2386 42 1 -1.0900 4.2074 5.1440 43 1 0.6135 3.6798 5.6143 44 1 1.4211 4.1900 3.2640 45 1 -0.2820 4.7177 2.7927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431192621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:54 Heat of formation + Delta-G solvation = 53.290389 kcal Electronic energy + Delta-G solvation = -26773.448627 eV Core-core repulsion = 23305.710660 eV Total energy + Delta-G solvation = -3467.737967 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87692 -37.64724 -36.76011 -35.78340 -33.51680 -32.21275 -31.61085 -29.54269 -26.91457 -26.42497 -25.56913 -24.79502 -22.71014 -21.84690 -21.22059 -19.39507 -19.07346 -18.91579 -17.23234 -16.71908 -16.09648 -15.78902 -15.31558 -14.82508 -14.47901 -14.01207 -13.95830 -13.63930 -13.31314 -13.05062 -12.90673 -12.73467 -12.65157 -12.49513 -12.24062 -11.88342 -11.74839 -11.60180 -11.39306 -11.07254 -11.03634 -10.99929 -10.66403 -10.51493 -10.41636 -10.34749 -10.20185 -9.64738 -9.22471 -9.00551 -8.82750 -8.55002 -8.28587 -8.21767 -8.18107 -7.58001 -5.92292 -4.14743 1.18257 1.92826 2.33629 2.84565 3.21408 3.32344 3.33428 3.47829 4.10319 4.32017 4.66979 4.98613 5.00436 5.13833 5.20443 5.33772 5.40165 5.43287 5.54352 5.66692 5.69236 5.83303 5.86265 5.97571 6.04664 6.05164 6.14685 6.26121 6.34791 6.42222 6.44783 6.57419 6.64026 6.65182 6.71020 6.77915 6.90579 6.96777 7.15333 7.28149 7.61447 7.72194 7.85510 8.09341 8.36321 8.81050 9.01194 9.48168 9.58142 10.93555 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.005631 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.462714 B = 4970.955260 C = 5755.500182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.141 3.859 3 C -0.180 4.180 4 N -0.631 5.631 5 C 0.204 3.796 6 C -0.189 4.189 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.232 4.232 10 S 0.151 5.849 11 C 0.706 3.294 12 O -0.601 6.601 13 N -0.702 5.702 14 C 0.174 3.826 15 C 0.038 3.962 16 C -0.498 4.498 17 H 0.059 0.941 18 C 0.078 3.922 19 N -0.856 5.856 20 Si 0.882 3.118 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.199 4.199 25 C -0.215 4.215 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.157 0.843 38 H 0.399 0.601 39 H 0.012 0.988 40 H 0.120 0.880 41 H 0.262 0.738 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -5.777 -10.421 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.037 3.963 3 C -0.238 4.238 4 N -0.369 5.369 5 C 0.078 3.922 6 C -0.308 4.308 7 C -0.172 4.172 8 C -0.172 4.172 9 C -0.369 4.369 10 S 0.416 5.584 11 C 0.407 3.593 12 O -0.480 6.480 13 N -0.360 5.360 14 C 0.050 3.950 15 C 0.037 3.963 16 C -0.535 4.535 17 H 0.077 0.923 18 C -0.127 4.127 19 N -0.491 5.491 20 Si 0.710 3.290 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.238 4.238 25 C -0.252 4.252 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.175 0.825 38 H 0.241 0.759 39 H 0.030 0.970 40 H 0.137 0.863 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.436 -6.108 -7.956 11.918 hybrid contribution -1.550 -0.308 -2.360 2.841 sum 4.886 -6.416 -10.317 13.095 Atomic orbital electron populations 1.22516 0.95053 1.03143 1.03527 1.20970 0.94389 0.93038 0.87915 1.22481 1.01866 0.96215 1.03252 1.47323 1.60999 1.23381 1.05203 1.19582 0.90451 0.78914 1.03283 1.25169 1.06161 1.03401 0.96108 1.20005 1.00300 0.98379 0.98469 1.20045 1.00826 0.99672 0.96623 1.25760 1.07680 1.06002 0.97434 1.84900 1.38876 1.26063 1.08601 1.15902 0.80193 0.80863 0.82299 1.90815 1.56793 1.63847 1.36583 1.45640 1.48655 1.28963 1.12692 1.21002 0.93154 0.95718 0.85133 1.19264 0.95249 0.84995 0.96756 1.20504 1.00397 0.98163 1.34443 0.92256 1.24949 0.96870 0.96684 0.94244 1.69840 1.37766 1.04487 1.37007 0.86682 0.84553 0.78654 0.79117 1.19741 1.20802 1.20912 1.22926 1.00772 1.09031 0.91062 1.22959 0.98338 1.04547 0.99385 0.89671 0.91858 0.92269 0.89916 0.92227 0.91547 0.90377 0.89606 0.88598 0.84904 0.85042 0.82512 0.75904 0.97013 0.86270 0.92709 0.90302 0.91501 0.91449 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.11 37.16 0.34 -2.57 16 2 C 0.14 1.99 3.28 -67.93 -0.22 1.76 16 3 C -0.18 -2.40 8.88 37.16 0.33 -2.07 16 4 N -0.63 -10.64 2.41 -173.17 -0.42 -11.05 16 5 C 0.20 2.99 5.96 -5.20 -0.03 2.96 16 6 C -0.19 -2.83 6.09 -36.00 -0.22 -3.05 16 7 C -0.14 -1.83 10.05 -41.21 -0.41 -2.24 16 8 C -0.14 -1.81 10.18 -41.21 -0.42 -2.23 16 9 C -0.23 -3.20 11.23 29.04 0.33 -2.87 16 10 S 0.15 2.47 23.33 -107.50 -2.51 -0.04 16 11 C 0.71 15.05 7.67 -86.93 -0.67 14.38 16 12 O -0.60 -14.77 15.82 5.29 0.08 -14.69 16 13 N -0.70 -15.20 3.56 -65.22 -0.23 -15.44 16 14 C 0.17 4.16 4.60 -4.04 -0.02 4.14 16 15 C 0.04 0.90 2.03 -155.66 -0.32 0.58 16 16 C -0.50 -12.59 8.57 -34.44 -0.30 -12.88 16 17 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 18 C 0.08 1.99 5.23 -17.82 -0.09 1.89 16 19 N -0.86 -22.89 10.04 55.43 0.56 -22.34 16 20 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.20 -4.35 9.96 -26.69 -0.27 -4.62 16 25 C -0.21 -4.44 9.93 -26.69 -0.27 -4.71 16 26 H 0.08 1.65 5.24 -51.93 -0.27 1.38 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.94 7.82 -51.93 -0.41 0.53 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.25 5.14 -51.93 -0.27 0.98 16 33 H 0.09 0.96 7.96 -51.92 -0.41 0.55 16 34 H 0.10 1.55 7.23 -51.93 -0.38 1.17 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.40 8.19 2.55 -40.82 -0.10 8.09 16 39 H 0.01 0.28 8.10 -51.93 -0.42 -0.14 16 40 H 0.12 3.29 5.77 -51.93 -0.30 2.99 16 41 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 42 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -28.94 374.02 -10.89 -39.82 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -6.75 Total: 14.35 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.23 Total: -11.52 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.09 Total: -48.83 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.51 Total: -0.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.94 -10.89 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431192621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.114 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds