Wall clock time and date at job start Tue Mar 31 2020 13:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46840 * 2 1 4 4 N 1.46500 * 109.47004 * 119.99501 * 2 1 3 5 5 C 1.46498 * 119.99650 * 114.16153 * 4 2 1 6 6 C 1.50699 * 109.47431 * 274.34748 * 5 4 2 7 7 C 1.33391 * 125.20531 * 95.20450 * 6 5 4 8 8 C 1.38420 * 114.92089 * 179.97438 * 7 6 5 9 9 C 1.33388 * 114.92541 * 0.02562 * 8 7 6 10 10 S 1.75887 * 125.20130 * 274.90089 * 6 5 4 11 11 C 1.34771 * 120.00361 * 294.16581 * 4 2 1 12 12 O 1.21587 * 119.99855 * 186.15454 * 11 4 2 13 13 N 1.34772 * 120.00074 * 6.15362 * 11 4 2 14 14 C 1.46501 * 120.00095 * 184.16307 * 13 11 4 15 15 C 1.53008 * 109.47130 * 184.96233 * 14 13 11 16 16 C 1.50693 * 115.54921 * 56.09453 * 15 14 13 17 17 H 1.08003 * 119.99611 * 211.27663 * 16 15 14 18 18 C 1.37878 * 120.00451 * 30.99422 * 16 15 14 19 19 N 1.31518 * 119.99700 * 1.84574 * 18 16 15 20 20 Si 1.86791 * 120.00287 * 181.84067 * 18 16 15 21 21 H 1.48497 * 109.47174 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47224 * 120.00272 * 20 18 16 23 23 H 1.48500 * 109.47628 * 240.00453 * 20 18 16 24 24 C 1.53000 * 117.49474 * 201.76442 * 15 14 13 25 25 C 1.53000 * 117.49556 * 270.42250 * 15 14 13 26 26 H 1.08996 * 109.46832 * 301.67932 * 1 2 3 27 27 H 1.08996 * 109.46734 * 61.67873 * 1 2 3 28 28 H 1.08994 * 109.46763 * 181.68062 * 1 2 3 29 29 H 1.08992 * 109.46959 * 240.00002 * 2 1 3 30 30 H 1.09005 * 109.47164 * 172.66208 * 3 2 1 31 31 H 1.08994 * 109.47228 * 292.66410 * 3 2 1 32 32 H 1.08998 * 109.47234 * 52.66595 * 3 2 1 33 33 H 1.09009 * 109.47348 * 34.34839 * 5 4 2 34 34 H 1.09003 * 109.47409 * 154.34446 * 5 4 2 35 35 H 1.08002 * 122.53757 * 359.96603 * 7 6 5 36 36 H 1.08003 * 122.53745 * 180.02562 * 8 7 6 37 37 H 1.07992 * 125.20701 * 180.02562 * 9 8 7 38 38 H 0.97007 * 120.00216 * 4.15780 * 13 11 4 39 39 H 1.09002 * 109.47337 * 64.96165 * 14 13 11 40 40 H 1.09003 * 109.46977 * 304.96212 * 14 13 11 41 41 H 0.96995 * 119.99935 * 184.97562 * 19 18 16 42 42 H 1.09003 * 117.49488 * 215.00278 * 24 15 14 43 43 H 1.08994 * 117.50122 * 0.02562 * 24 15 14 44 44 H 1.09000 * 117.49908 * 359.97438 * 25 15 14 45 45 H 1.08997 * 117.49714 * 144.98020 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.7521 -1.9518 1.0657 6 6 1.7748 -3.0968 0.9970 7 6 1.3184 -3.6520 -0.1267 8 6 0.4259 -4.6938 0.0581 9 6 0.1571 -4.9844 1.3319 10 16 1.0671 -3.9105 2.3866 11 6 1.7925 -0.1656 2.4168 12 8 2.2920 -0.6769 3.4004 13 7 1.0131 0.9261 2.5471 14 6 0.8411 1.5508 3.8611 15 6 -0.1799 2.6856 3.7566 16 6 -1.5291 2.2976 3.2088 17 1 -2.1070 3.0118 2.6410 18 6 -2.0231 1.0291 3.4274 19 7 -1.3332 0.1693 4.1447 20 14 -3.6722 0.5317 2.7049 21 1 -4.2434 1.6718 1.9439 22 1 -3.4847 -0.6263 1.7942 23 1 -4.5995 0.1539 3.8015 24 6 -0.1402 3.7728 4.8324 25 6 0.3471 4.0806 3.4143 26 1 -0.3633 0.5397 0.8745 27 1 -0.3633 0.4875 -0.9046 28 1 -0.3632 -1.0272 0.0301 29 1 1.8933 -0.5138 -0.8899 30 1 3.1221 1.4454 0.1313 31 1 1.7878 1.9171 -0.9483 32 1 1.5735 1.9928 0.8171 33 1 3.3517 -1.9308 0.1555 34 1 3.4055 -2.0830 1.9282 35 1 1.6221 -3.3142 -1.1065 36 1 -0.0190 -5.2308 -0.7666 37 1 -0.5128 -5.7633 1.6648 38 1 0.5659 1.2984 1.7709 39 1 1.7962 1.9515 4.2007 40 1 0.4854 0.8065 4.5735 41 1 -1.6450 -0.7443 4.2386 42 1 -1.0900 4.2074 5.1440 43 1 0.6135 3.6798 5.6143 44 1 1.4211 4.1900 3.2640 45 1 -0.2820 4.7177 2.7927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431192621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:53 Heat of formation + Delta-G solvation = 39.422106 kcal Electronic energy + Delta-G solvation = -26774.050001 eV Core-core repulsion = 23305.710660 eV Total energy + Delta-G solvation = -3468.339341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36181 -38.88871 -38.38755 -37.25030 -35.01769 -34.12992 -33.02898 -30.76947 -28.05530 -28.00725 -27.39425 -26.22983 -23.86328 -23.15421 -22.93746 -21.13820 -20.67074 -20.04983 -18.63890 -18.09700 -17.62806 -17.29746 -16.73861 -16.45373 -15.95370 -15.70093 -15.53042 -14.99102 -14.84003 -14.42143 -14.31601 -14.07341 -13.79341 -13.58838 -13.53832 -13.32823 -13.26966 -13.08054 -12.89329 -12.77108 -12.50466 -12.28489 -12.19242 -12.16981 -12.02489 -11.68833 -11.49993 -11.44952 -11.00523 -10.87601 -10.64393 -10.11904 -9.84407 -9.59515 -9.39996 -9.21106 -7.87760 -6.15827 0.09080 0.80042 1.25102 1.35653 1.41854 1.49642 1.75853 2.17243 2.40148 2.50223 3.01136 3.34798 3.70637 3.90082 3.96909 4.19187 4.24341 4.25774 4.31060 4.37433 4.56888 4.61766 4.72582 4.75305 4.76769 4.81194 4.84193 4.86005 4.92792 4.97156 4.97546 5.15205 5.21780 5.31318 5.35836 5.37554 5.39698 5.55486 5.63220 5.65321 5.79066 6.05961 6.09320 6.25818 6.41525 6.84758 7.40135 7.48613 7.95707 8.93782 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.005631 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.462714 B = 4970.955260 C = 5755.500182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.139 3.861 3 C -0.175 4.175 4 N -0.624 5.624 5 C 0.201 3.799 6 C -0.198 4.198 7 C -0.123 4.123 8 C -0.138 4.138 9 C -0.227 4.227 10 S 0.047 5.953 11 C 0.700 3.300 12 O -0.644 6.644 13 N -0.698 5.698 14 C 0.186 3.814 15 C 0.009 3.991 16 C -0.499 4.499 17 H 0.057 0.943 18 C 0.042 3.958 19 N -0.877 5.877 20 Si 0.933 3.067 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.291 1.291 24 C -0.201 4.201 25 C -0.185 4.185 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.127 0.873 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.134 0.866 34 H 0.071 0.929 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.175 0.825 38 H 0.405 0.595 39 H 0.006 0.994 40 H 0.079 0.921 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -5.399 -14.425 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.036 3.964 3 C -0.233 4.233 4 N -0.361 5.361 5 C 0.076 3.924 6 C -0.317 4.317 7 C -0.154 4.154 8 C -0.169 4.169 9 C -0.362 4.362 10 S 0.311 5.689 11 C 0.401 3.599 12 O -0.527 6.527 13 N -0.356 5.356 14 C 0.061 3.939 15 C 0.008 3.992 16 C -0.537 4.537 17 H 0.075 0.925 18 C -0.160 4.160 19 N -0.514 5.514 20 Si 0.759 3.241 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.217 1.217 24 C -0.240 4.240 25 C -0.222 4.222 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.063 0.937 29 H 0.145 0.855 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.188 0.812 36 H 0.184 0.816 37 H 0.193 0.807 38 H 0.249 0.751 39 H 0.024 0.976 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.481 -5.714 -12.020 14.803 hybrid contribution -1.568 -0.440 -1.174 2.008 sum 4.913 -6.154 -13.194 15.365 Atomic orbital electron populations 1.22460 0.96383 1.01836 1.03063 1.21272 0.93250 0.93896 0.87972 1.22434 1.01797 0.95392 1.03689 1.47393 1.60340 1.23884 1.04482 1.19800 0.90275 0.77893 1.04404 1.25148 1.07152 1.04100 0.95281 1.20434 0.98661 0.97187 0.99160 1.20499 1.00080 0.99325 0.96947 1.25966 1.07505 1.05685 0.97082 1.85302 1.41873 1.29265 1.12500 1.16161 0.79798 0.80567 0.83344 1.90778 1.58324 1.64929 1.38686 1.45528 1.48885 1.29236 1.11941 1.20610 0.92683 0.94947 0.85692 1.19285 0.94857 0.86120 0.98892 1.20656 1.01022 0.98040 1.33974 0.92493 1.25472 0.99073 0.96831 0.94667 1.70056 1.38855 1.04075 1.38413 0.85894 0.81545 0.78391 0.78231 1.18602 1.21051 1.21723 1.22949 1.01122 1.08012 0.91892 1.22934 0.99373 1.01764 0.98159 0.93686 0.88820 0.93707 0.85491 0.91750 0.88383 0.93418 0.84878 0.91096 0.81198 0.81641 0.80748 0.75086 0.97605 0.90295 0.93840 0.90431 0.90818 0.89850 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.27 9.11 71.98 0.66 -4.61 16 2 C 0.14 3.47 3.28 44.99 0.15 3.62 16 3 C -0.17 -4.14 8.88 71.98 0.64 -3.50 16 4 N -0.62 -20.41 2.41 -820.05 -1.97 -22.38 16 5 C 0.20 5.64 5.96 85.63 0.51 6.15 16 6 C -0.20 -5.70 6.09 24.59 0.15 -5.55 16 7 C -0.12 -2.77 10.05 21.22 0.21 -2.56 16 8 C -0.14 -3.10 10.18 21.22 0.22 -2.88 16 9 C -0.23 -6.01 11.23 66.72 0.75 -5.26 16 10 S 0.05 1.60 23.33 -56.49 -1.32 0.28 16 11 C 0.70 30.66 7.67 179.06 1.37 32.03 16 12 O -0.64 -33.50 15.82 -3.99 -0.06 -33.57 16 13 N -0.70 -30.98 3.56 -478.53 -1.71 -32.69 16 14 C 0.19 9.25 4.60 86.38 0.40 9.64 16 15 C 0.01 0.44 2.03 -52.93 -0.11 0.33 16 16 C -0.50 -25.40 8.57 25.60 0.22 -25.18 16 17 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.04 2.18 5.23 84.65 0.44 2.63 16 19 N -0.88 -49.05 10.04 21.45 0.22 -48.84 16 20 Si 0.93 42.15 29.54 68.60 2.03 44.18 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 24 C -0.20 -8.72 9.96 30.62 0.30 -8.42 16 25 C -0.19 -7.39 9.93 30.62 0.30 -7.08 16 26 H 0.04 1.72 5.24 -2.39 -0.01 1.71 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.13 2.13 7.82 -2.39 -0.02 2.11 16 30 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.45 5.14 -2.39 -0.01 1.43 16 33 H 0.13 2.43 7.96 -2.38 -0.02 2.41 16 34 H 0.07 2.36 7.23 -2.39 -0.02 2.34 16 35 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.41 16.79 2.55 -92.70 -0.24 16.55 16 39 H 0.01 0.29 8.10 -2.39 -0.02 0.27 16 40 H 0.08 4.62 5.77 -2.39 -0.01 4.61 16 41 H 0.25 14.17 8.32 -92.71 -0.77 13.39 16 42 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -67.33 374.02 4.15 -63.18 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: 0.75 Total: 40.48 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 6.21 Total: -10.65 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.46 Total: -103.91 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.06 Total: -33.57 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.28 kcal Total: -67.33 4.15 -63.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431192621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.603 kcal (2) G-P(sol) polarization free energy of solvation -67.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds