Wall clock time and date at job start Tue Mar 31 2020 13:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99713 * 2 1 4 4 N 1.46507 * 109.46994 * 125.00039 * 3 2 1 5 5 C 1.46498 * 119.99670 * 269.99677 * 4 3 2 6 6 C 1.50700 * 109.47506 * 269.99811 * 5 4 3 7 7 H 1.08006 * 119.99433 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00399 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00238 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99766 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47234 * 89.99998 * 10 8 6 12 12 H 1.48507 * 109.46974 * 209.99736 * 10 8 6 13 13 H 1.48495 * 109.47270 * 329.99692 * 10 8 6 14 14 C 1.34774 * 119.99932 * 89.99757 * 4 3 2 15 15 O 1.21584 * 119.99575 * 180.02562 * 14 4 3 16 16 N 1.34778 * 119.99985 * 359.97438 * 14 4 3 17 17 C 1.39940 * 119.99429 * 184.58844 * 16 14 4 18 18 C 1.38923 * 120.04622 * 324.87841 * 17 16 14 19 19 C 1.38125 * 120.04261 * 180.02562 * 18 17 16 20 20 C 1.38222 * 120.12169 * 359.68619 * 19 18 17 21 21 C 1.38764 * 120.08158 * 0.59596 * 20 19 18 22 22 O 1.35895 * 120.01714 * 179.70102 * 21 20 19 23 23 C 1.42901 * 117.00296 * 359.72177 * 22 21 20 24 24 C 1.53002 * 109.46913 * 180.02562 * 23 22 21 25 25 F 1.39890 * 109.47285 * 64.99953 * 24 23 22 26 26 C 1.38633 * 119.95902 * 359.42277 * 21 20 19 27 27 H 1.08003 * 119.99996 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00143 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00143 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47223 * 4.99958 * 3 2 1 31 31 H 1.08999 * 109.46863 * 244.99933 * 3 2 1 32 32 H 1.09005 * 109.47326 * 30.00146 * 5 4 3 33 33 H 1.09005 * 109.47015 * 150.00111 * 5 4 3 34 34 H 0.97001 * 119.99878 * 180.02562 * 9 8 6 35 35 H 0.96995 * 120.00188 * 4.58756 * 16 14 4 36 36 H 1.07998 * 119.97925 * 0.03099 * 18 17 16 37 37 H 1.07998 * 119.94039 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.95789 * 180.31399 * 20 19 18 39 39 H 1.09000 * 109.46937 * 299.99980 * 23 22 21 40 40 H 1.08994 * 109.46938 * 60.00072 * 23 22 21 41 41 H 1.09000 * 109.46463 * 184.99940 * 24 23 22 42 42 H 1.08996 * 109.46875 * 304.99740 * 24 23 22 43 43 H 1.07999 * 120.06055 * 180.26018 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3437 2.4805 7 1 3.3033 3.8371 1.6365 8 6 2.5183 4.0668 3.6082 9 7 2.7678 5.3571 3.6569 10 14 1.7235 3.2134 5.0675 11 1 2.7794 2.7233 5.9896 12 1 0.8466 4.1735 5.7850 13 1 0.9128 2.0653 4.5883 14 6 4.2497 0.8662 0.9824 15 8 5.0215 0.8881 1.9216 16 7 4.6496 0.3753 -0.2073 17 6 5.9205 -0.1959 -0.3369 18 6 6.9918 0.3205 0.3812 19 6 8.2463 -0.2430 0.2528 20 6 8.4380 -1.3256 -0.5849 21 6 7.3728 -1.8419 -1.3091 22 8 7.5640 -2.9025 -2.1369 23 6 8.8888 -3.4320 -2.2176 24 6 8.9081 -4.6118 -3.1916 25 9 8.6122 -4.1568 -4.4810 26 6 6.1123 -1.2787 -1.1831 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9314 32 1 1.4886 1.6967 2.5459 33 1 3.0989 1.3604 3.2260 34 1 2.5388 5.8658 4.4505 35 1 4.0566 0.4180 -0.9737 36 1 6.8436 1.1631 1.0403 37 1 9.0780 0.1600 0.8116 38 1 9.4189 -1.7674 -0.6794 39 1 9.5687 -2.6574 -2.5722 40 1 9.2057 -3.7698 -1.2309 41 1 9.8965 -5.0711 -3.1863 42 1 8.1639 -5.3472 -2.8862 43 1 5.2812 -1.6818 -1.7428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433286068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:22 Heat of formation + Delta-G solvation = -53.202252 kcal Electronic energy + Delta-G solvation = -26484.437934 eV Core-core repulsion = 22445.868924 eV Total energy + Delta-G solvation = -4038.569010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.97158 -40.56387 -39.65862 -37.56183 -35.83603 -34.34790 -33.16166 -32.16582 -31.68130 -29.89672 -29.11750 -27.88915 -25.66465 -24.15733 -22.84858 -22.65577 -21.28886 -20.18050 -19.45400 -18.54343 -17.58699 -17.00864 -16.92991 -16.48148 -16.37657 -15.97370 -15.55028 -15.22899 -15.06860 -14.92275 -14.53580 -14.39912 -13.97321 -13.61485 -13.50026 -13.18773 -12.99027 -12.64183 -12.36239 -11.99797 -11.80810 -11.73831 -11.65156 -11.59873 -11.30208 -11.15024 -10.97304 -10.94480 -10.54575 -10.20428 -10.00876 -9.61205 -9.35146 -9.32225 -8.59647 -8.41879 -8.01547 -7.68104 -6.09538 -4.08469 1.35937 1.55442 2.28273 2.73282 3.22733 3.29763 3.35674 3.37756 3.60105 3.99060 4.10858 4.31616 4.32046 4.39079 4.49372 4.66884 4.81610 4.97977 5.02528 5.07280 5.23141 5.26637 5.34254 5.38381 5.42273 5.51135 5.59589 5.79885 5.87937 6.04488 6.27645 6.30995 6.42013 6.63392 6.66638 6.69265 6.79021 6.87460 7.03684 7.22657 7.34585 7.43988 7.60365 8.38450 8.45990 8.93130 9.08422 9.50589 11.03739 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.002744 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.071805 B =10201.304624 C =11226.779456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.597 5.597 5 C 0.232 3.768 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.703 3.297 15 O -0.564 6.564 16 N -0.693 5.693 17 C 0.218 3.782 18 C -0.152 4.152 19 C -0.062 4.062 20 C -0.233 4.233 21 C 0.141 3.859 22 O -0.313 6.313 23 C 0.026 3.974 24 C 0.067 3.933 25 F -0.211 7.211 26 C -0.187 4.187 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.404 0.596 36 H 0.148 0.852 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -18.415 -13.300 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.331 5.331 5 C 0.111 3.889 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.405 3.595 15 O -0.440 6.440 16 N -0.343 5.343 17 C 0.121 3.879 18 C -0.173 4.173 19 C -0.081 4.081 20 C -0.253 4.253 21 C 0.096 3.904 22 O -0.227 6.227 23 C -0.050 4.050 24 C 0.012 3.988 25 F -0.192 7.192 26 C -0.208 4.208 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.166 0.834 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.148 -18.256 -12.558 23.609 hybrid contribution -0.549 -0.241 0.480 0.768 sum 7.599 -18.497 -12.077 23.361 Atomic orbital electron populations 1.23855 0.95797 1.01923 1.00052 1.23463 0.96533 0.98975 1.00335 1.20574 0.93221 0.95789 0.89192 1.47217 1.09003 1.63182 1.13673 1.19619 0.94814 0.94997 0.79434 1.21338 1.41201 0.91131 1.03143 0.90706 1.24832 0.95283 0.94713 0.98093 1.69896 1.47736 1.06610 1.29272 0.86873 0.79887 0.79665 0.83400 1.19877 1.21079 1.19024 1.15846 0.83029 0.78453 0.82198 1.90895 1.52502 1.61202 1.39359 1.42921 1.15694 1.63313 1.12338 1.17181 0.84362 0.90946 0.95447 1.21440 0.90824 1.02743 1.02284 1.20835 0.96916 0.94299 0.96083 1.21097 0.98202 1.02211 1.03750 1.18469 0.93677 0.87577 0.90681 1.86044 1.29988 1.44952 1.61704 1.23429 0.84304 0.96818 1.00468 1.22054 1.03259 0.95677 0.77774 1.92807 1.95271 1.90787 1.40376 1.19927 0.96005 0.98161 1.06754 0.88654 0.88118 0.87649 0.88687 0.91134 0.94963 0.94378 0.92553 0.75918 0.83397 0.85534 0.85934 0.90747 0.90155 0.88622 0.89616 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 14.32 29.01 0.42 -1.70 16 2 C -0.17 -2.28 9.85 -36.03 -0.35 -2.64 16 3 C 0.14 2.08 5.65 -5.19 -0.03 2.05 16 4 N -0.60 -12.09 2.44 -182.18 -0.44 -12.53 16 5 C 0.23 5.60 4.23 -5.19 -0.02 5.58 16 6 C -0.53 -14.98 9.94 -34.44 -0.34 -15.32 16 7 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 10 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 14 C 0.70 14.45 8.12 -86.92 -0.71 13.75 16 15 O -0.56 -13.78 13.36 5.29 0.07 -13.71 16 16 N -0.69 -11.12 5.21 -14.24 -0.07 -11.20 16 17 C 0.22 3.43 6.30 -83.71 -0.53 2.90 16 18 C -0.15 -2.52 8.69 -39.37 -0.34 -2.86 16 19 C -0.06 -0.84 10.03 -39.63 -0.40 -1.24 16 20 C -0.23 -2.77 9.04 -39.39 -0.36 -3.12 16 21 C 0.14 1.81 6.68 -39.24 -0.26 1.55 16 22 O -0.31 -3.60 10.13 -19.41 -0.20 -3.79 16 23 C 0.03 0.19 5.20 37.16 0.19 0.38 16 24 C 0.07 0.39 7.92 37.16 0.29 0.69 16 25 F -0.21 -2.06 17.35 2.25 0.04 -2.02 16 26 C -0.19 -2.55 9.90 -39.25 -0.39 -2.94 16 27 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 31 H 0.07 0.89 6.30 -51.93 -0.33 0.57 16 32 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 33 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.40 5.20 6.52 -40.82 -0.27 4.94 16 36 H 0.15 2.87 6.22 -52.49 -0.33 2.55 16 37 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.12 1.09 6.29 -52.49 -0.33 0.76 16 39 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 40 H 0.08 0.45 7.65 -51.93 -0.40 0.05 16 41 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -35.08 367.08 -7.60 -42.69 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.71 Total: 5.85 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.92 Total: -0.90 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.25 Total: -50.38 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.13 Total: -17.51 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.08 -7.60 -42.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433286068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.517 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds