Wall clock time and date at job start Tue Mar 31 2020 13:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47131 * 2 1 4 4 H 1.08998 * 109.46801 * 305.00015 * 3 2 1 5 5 N 1.46502 * 109.46754 * 65.00302 * 3 2 1 6 6 C 1.34777 * 119.99794 * 274.99464 * 5 3 2 7 7 O 1.21584 * 119.99972 * 0.02562 * 6 5 3 8 8 N 1.34770 * 119.99729 * 180.02562 * 6 5 3 9 9 C 1.46510 * 119.99787 * 180.02562 * 8 6 5 10 10 H 1.08994 * 110.05229 * 326.41531 * 9 8 6 11 11 C 1.53873 * 110.03225 * 87.83711 * 9 8 6 12 12 C 1.54263 * 106.60305 * 119.28299 * 11 9 8 13 13 C 1.54893 * 104.19213 * 23.60888 * 12 11 9 14 14 H 1.08994 * 110.91565 * 80.44888 * 13 12 11 15 15 C 1.50695 * 110.75637 * 203.74315 * 13 12 11 16 16 H 1.08008 * 120.00377 * 109.35014 * 15 13 12 17 17 C 1.37882 * 120.00142 * 289.35402 * 15 13 12 18 18 N 1.31514 * 119.99729 * 353.70958 * 17 15 13 19 19 Si 1.86802 * 120.00047 * 173.71671 * 17 15 13 20 20 H 1.48497 * 109.46927 * 265.20423 * 19 17 15 21 21 H 1.48499 * 109.47144 * 25.20550 * 19 17 15 22 22 H 1.48507 * 109.47050 * 145.20550 * 19 17 15 23 23 C 1.54272 * 110.03190 * 205.00073 * 9 8 6 24 24 C 1.50695 * 109.46942 * 185.00310 * 3 2 1 25 25 C 1.33385 * 125.20887 * 100.00276 * 24 3 2 26 26 C 1.38423 * 114.92838 * 179.97438 * 25 24 3 27 27 C 1.33389 * 114.91720 * 359.97438 * 26 25 24 28 28 S 1.75886 * 109.59478 * 359.75621 * 27 26 25 29 29 H 1.09002 * 109.47212 * 299.99860 * 1 2 3 30 30 H 1.08997 * 109.47274 * 59.99805 * 1 2 3 31 31 H 1.09008 * 109.47530 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47212 * 240.00139 * 2 1 3 33 33 H 1.08997 * 109.47274 * 120.00194 * 2 1 3 34 34 H 0.97003 * 119.99801 * 95.00432 * 5 3 2 35 35 H 0.97002 * 120.00357 * 0.02562 * 8 6 5 36 36 H 1.09001 * 110.02592 * 238.57039 * 11 9 8 37 37 H 1.09002 * 110.02954 * 359.94838 * 11 9 8 38 38 H 1.08993 * 110.48796 * 264.93138 * 12 11 9 39 39 H 1.08994 * 110.48905 * 142.28579 * 12 11 9 40 40 H 0.97003 * 120.00001 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.48426 * 98.42682 * 23 9 8 42 42 H 1.09002 * 110.48463 * 335.78759 * 23 9 8 43 43 H 1.07999 * 122.53527 * 359.97438 * 25 24 3 44 44 H 1.07993 * 122.54129 * 180.02562 * 26 25 24 45 45 H 1.08001 * 125.20494 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0974 1.2519 6 6 0.4351 2.6644 1.3670 7 8 -0.3415 2.6319 0.4321 8 7 0.0788 3.2673 2.5185 9 6 -1.2446 3.8831 2.6439 10 1 -1.5568 4.2965 1.6849 11 6 -2.2678 2.8400 3.1265 12 6 -2.8202 3.3543 4.4719 13 6 -2.5851 4.8843 4.4191 14 1 -3.3611 5.3773 3.8336 15 6 -2.5192 5.4628 5.8090 16 1 -1.5782 5.8189 6.2018 17 6 -3.6602 5.5375 6.5795 18 7 -4.8261 5.2202 6.0604 19 14 -3.5499 6.0896 8.3607 20 1 -3.4537 4.8989 9.2429 21 1 -2.3453 6.9387 8.5421 22 1 -4.7633 6.8700 8.7131 23 6 -1.2111 4.9949 3.7129 24 6 3.5418 1.4443 -0.1239 25 6 4.2202 1.6656 -1.2508 26 6 5.5976 1.6178 -1.1216 27 6 6.0378 1.3581 0.1105 28 16 4.6685 1.1635 1.1973 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2720 2.1231 1.9978 35 1 0.6986 3.2935 3.2643 36 1 -3.0765 2.7473 2.4017 37 1 -1.7798 1.8755 3.2666 38 1 -2.2714 2.9125 5.3035 39 1 -3.8844 3.1346 4.5563 40 1 -5.6289 5.2731 6.6023 41 1 -1.1010 5.9723 3.2433 42 1 -0.4023 4.8180 4.4219 43 1 3.7319 1.8669 -2.1928 44 1 6.2652 1.7793 -1.9549 45 1 7.0761 1.2835 0.3979 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455283797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:13 Heat of formation + Delta-G solvation = -14.210507 kcal Electronic energy + Delta-G solvation = -24764.003306 eV Core-core repulsion = 21293.338281 eV Total energy + Delta-G solvation = -3470.665025 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20211 -38.40295 -37.31322 -35.62718 -33.68415 -32.47542 -31.48068 -30.23033 -28.12219 -27.13087 -25.95156 -23.83144 -23.51318 -21.76859 -20.86692 -19.83068 -19.52587 -19.09816 -18.29489 -17.35603 -16.56038 -15.94088 -15.74571 -15.48096 -14.92300 -14.64837 -14.13353 -13.99663 -13.70156 -13.57339 -13.27532 -12.98574 -12.79640 -12.58890 -12.33901 -12.21949 -11.79740 -11.66440 -11.51079 -11.16843 -11.09356 -11.00015 -10.88901 -10.80073 -10.54801 -10.27689 -9.99025 -9.78655 -9.57388 -9.20641 -9.18329 -8.93990 -8.84510 -8.80364 -8.46838 -8.35626 -6.01310 -4.02960 0.63129 1.25189 1.64955 2.37693 2.89499 3.30217 3.37830 3.40091 3.42473 4.26467 4.40650 4.45733 4.72845 4.91610 5.00817 5.12074 5.22483 5.30595 5.36620 5.51122 5.59072 5.70730 5.71548 5.80023 5.84952 5.92287 5.96736 6.09916 6.12110 6.32822 6.37928 6.46658 6.51302 6.57852 6.69719 6.75953 6.91032 6.96402 7.05742 7.26473 7.35310 7.65951 7.87397 8.01607 8.20966 8.44235 8.82215 9.00061 9.60494 11.08859 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.002514 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.355858 B =11134.557627 C =11867.662706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.237 3.763 4 H 0.106 0.894 5 N -0.748 5.748 6 C 0.704 3.296 7 O -0.586 6.586 8 N -0.733 5.733 9 C 0.157 3.843 10 H 0.081 0.919 11 C -0.132 4.132 12 C -0.106 4.106 13 C 0.051 3.949 14 H 0.041 0.959 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.274 1.274 22 H -0.287 1.287 23 C -0.121 4.121 24 C -0.182 4.182 25 C -0.129 4.129 26 C -0.133 4.133 27 C -0.214 4.214 28 S 0.104 5.896 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.391 0.609 35 H 0.392 0.608 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.260 0.740 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.191 -10.298 -12.777 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.129 3.871 4 H 0.123 0.877 5 N -0.405 5.405 6 C 0.404 3.596 7 O -0.464 6.464 8 N -0.387 5.387 9 C 0.053 3.947 10 H 0.099 0.901 11 C -0.171 4.171 12 C -0.144 4.144 13 C 0.032 3.968 14 H 0.059 0.941 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.199 1.199 22 H -0.213 1.213 23 C -0.159 4.159 24 C -0.300 4.300 25 C -0.160 4.160 26 C -0.163 4.163 27 C -0.349 4.349 28 S 0.367 5.633 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.225 0.775 35 H 0.226 0.774 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 19.104 -10.617 -12.059 24.962 hybrid contribution 0.925 0.500 0.255 1.082 sum 20.029 -10.117 -11.804 25.355 Atomic orbital electron populations 1.21792 0.93910 1.00556 1.03825 1.21993 0.97628 0.94876 1.02224 1.19199 0.85690 0.94065 0.88099 0.87651 1.45295 1.16667 1.62137 1.16378 1.15927 0.81554 0.78296 0.83819 1.90913 1.51645 1.64791 1.39021 1.45569 1.18852 1.60163 1.14102 1.21737 0.79848 0.93271 0.99881 0.90100 1.22620 0.97784 0.97360 0.99374 1.22378 1.00023 0.99109 0.92927 1.19564 0.90211 0.91863 0.95124 0.94130 1.21096 0.94363 1.40764 0.98953 0.92678 1.24983 0.95411 0.95249 0.98193 1.69969 0.97957 1.48813 1.35882 0.86658 0.77542 0.78602 0.85649 1.20789 1.19930 1.21313 1.22767 1.01809 0.95484 0.95876 1.24746 0.98853 1.09271 0.97155 1.20125 0.93570 1.03321 0.98989 1.20179 0.95298 1.03242 0.97611 1.25657 1.02392 1.09986 0.96892 1.84281 0.96511 1.70216 1.12299 0.91751 0.91994 0.93650 0.91115 0.91888 0.77481 0.77412 0.92549 0.93238 0.93466 0.92157 0.93046 0.92785 0.92252 0.83987 0.84132 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.51 37.16 0.32 -1.46 16 2 C -0.13 -1.30 5.59 -26.73 -0.15 -1.45 16 3 C 0.24 2.52 2.69 -69.08 -0.19 2.33 16 4 H 0.11 1.27 7.56 -51.93 -0.39 0.88 16 5 N -0.75 -8.69 5.02 -59.82 -0.30 -8.99 16 6 C 0.70 10.62 7.13 -86.92 -0.62 10.00 16 7 O -0.59 -10.66 13.13 5.29 0.07 -10.59 16 8 N -0.73 -10.99 4.99 -57.58 -0.29 -11.27 16 9 C 0.16 2.82 3.25 -66.80 -0.22 2.61 16 10 H 0.08 1.56 7.56 -51.93 -0.39 1.16 16 11 C -0.13 -2.55 6.59 -25.62 -0.17 -2.72 16 12 C -0.11 -2.39 6.01 -25.07 -0.15 -2.54 16 13 C 0.05 1.24 2.64 -89.78 -0.24 1.00 16 14 H 0.04 1.08 8.10 -51.93 -0.42 0.66 16 15 C -0.51 -13.73 8.45 -34.44 -0.29 -14.02 16 16 H 0.05 1.45 7.76 -52.48 -0.41 1.04 16 17 C 0.06 1.74 5.36 -17.82 -0.10 1.65 16 18 N -0.89 -25.45 13.07 55.43 0.72 -24.73 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.12 -2.38 5.94 -25.07 -0.15 -2.53 16 24 C -0.18 -1.67 5.45 -36.01 -0.20 -1.87 16 25 C -0.13 -1.08 10.04 -41.21 -0.41 -1.49 16 26 C -0.13 -0.97 10.18 -41.21 -0.42 -1.39 16 27 C -0.21 -1.54 11.23 29.04 0.33 -1.22 16 28 S 0.10 0.84 22.30 -107.50 -2.40 -1.56 16 29 H 0.06 0.96 5.64 -51.93 -0.29 0.67 16 30 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 31 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.39 3.85 7.68 -40.82 -0.31 3.54 16 35 H 0.39 5.00 8.37 -40.82 -0.34 4.66 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.91 7.92 -51.93 -0.41 0.49 16 38 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 39 H 0.06 1.49 8.09 -51.93 -0.42 1.07 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.11 7.61 -51.93 -0.40 0.72 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -30.06 373.80 -11.36 -41.42 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.13 Total: 7.19 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.65 Total: -13.11 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.14 Total: -44.99 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.40 Total: -1.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.06 -11.36 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455283797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.211 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds