Wall clock time and date at job start Tue Mar 31 2020 13:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 109.47026 * 2 1 4 4 C 1.81401 * 102.99665 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47081 * 180.02562 * 4 3 2 6 6 C 1.38275 * 119.93149 * 89.99597 * 5 4 3 7 7 C 1.38121 * 120.06968 * 180.02562 * 6 5 4 8 8 C 1.38868 * 119.92758 * 0.02562 * 7 6 5 9 9 N 1.39946 * 120.06672 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00246 * 35.08726 * 9 8 7 11 11 O 1.21591 * 119.99982 * 355.37790 * 10 9 8 12 12 N 1.34776 * 120.00081 * 175.37992 * 10 9 8 13 13 C 1.46501 * 119.99926 * 179.72408 * 12 10 9 14 14 H 1.08997 * 109.47227 * 325.27386 * 13 12 10 15 15 C 1.50703 * 109.47024 * 205.27392 * 13 12 10 16 16 H 1.07996 * 119.99621 * 359.97438 * 15 13 12 17 17 C 1.37869 * 120.00070 * 179.97438 * 15 13 12 18 18 N 1.31521 * 119.99915 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00137 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47182 * 120.00081 * 19 17 15 22 22 H 1.48499 * 109.47164 * 240.00051 * 19 17 15 23 23 C 1.52999 * 109.47309 * 85.27527 * 13 12 10 24 24 C 1.53001 * 109.46938 * 295.00167 * 23 13 12 25 25 C 1.38862 * 119.86067 * 0.24834 * 8 7 6 26 26 C 1.38113 * 119.93034 * 359.49644 * 25 8 7 27 27 H 1.09005 * 109.47420 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.47510 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47165 * 299.99975 * 1 2 3 30 30 H 1.08994 * 109.46927 * 240.00090 * 2 1 3 31 31 H 1.09005 * 109.47020 * 119.99899 * 2 1 3 32 32 H 1.08992 * 109.47397 * 59.99800 * 4 3 2 33 33 H 1.09002 * 109.47097 * 299.99618 * 4 3 2 34 34 H 1.08003 * 119.96967 * 0.02562 * 6 5 4 35 35 H 1.07996 * 120.03604 * 179.97438 * 7 6 5 36 36 H 0.96995 * 119.99711 * 215.08395 * 9 8 7 37 37 H 0.96996 * 119.99919 * 359.97438 * 12 10 9 38 38 H 0.97007 * 120.00071 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47311 * 54.99488 * 23 13 12 40 40 H 1.08995 * 109.47564 * 174.99717 * 23 13 12 41 41 H 1.09009 * 109.47364 * 180.02562 * 24 23 13 42 42 H 1.09001 * 109.47076 * 299.99228 * 24 23 13 43 43 H 1.08995 * 109.47576 * 59.99933 * 24 23 13 44 44 H 1.07997 * 120.03860 * 179.72676 * 25 8 7 45 45 H 1.08003 * 119.96602 * 180.25399 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.5964 2.8609 -0.0002 6 6 4.8986 3.4806 1.1983 7 6 5.5024 4.7229 1.2022 8 6 5.8055 5.3496 0.0006 9 7 6.4168 6.6085 0.0011 10 6 7.3153 6.9210 0.9557 11 8 7.5329 6.1425 1.8641 12 7 7.9727 8.0964 0.9036 13 6 8.9450 8.4386 1.9446 14 1 8.6091 8.0385 2.9013 15 6 9.0693 9.9373 2.0427 16 1 8.4830 10.5713 1.3942 17 6 9.9315 10.4990 2.9604 18 7 10.6458 9.7268 3.7498 19 14 10.0851 12.3566 3.0825 20 1 9.1817 12.9942 2.0912 21 1 9.7086 12.7956 4.4502 22 1 11.4875 12.7568 2.8026 23 6 10.3059 7.8362 1.5895 24 6 10.2092 6.3094 1.6120 25 6 5.4955 4.7271 -1.2013 26 6 4.8966 3.4826 -1.1984 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.2398 0.9544 -0.8909 33 1 4.2406 0.9542 0.8890 34 1 4.6623 2.9929 2.1325 35 1 5.7379 5.2066 2.1386 36 1 6.1938 7.2562 -0.6856 37 1 7.7994 8.7173 0.1789 38 1 11.2528 10.1219 4.3952 39 1 10.6008 8.1668 0.5936 40 1 11.0492 8.1640 2.3161 41 1 11.1788 5.8802 1.3594 42 1 9.9143 5.9787 2.6079 43 1 9.4659 5.9816 0.8853 44 1 5.7259 5.2139 -2.1374 45 1 4.6589 2.9961 -2.1329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455858120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:37 Heat of formation + Delta-G solvation = -17.575191 kcal Electronic energy + Delta-G solvation = -24103.184067 eV Core-core repulsion = 20632.373138 eV Total energy + Delta-G solvation = -3470.810929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25908 -38.63483 -35.62889 -34.37727 -33.11628 -32.56965 -31.60356 -30.83172 -30.49766 -27.24898 -26.17655 -23.83550 -23.09791 -22.84504 -21.62704 -20.44693 -19.53344 -18.20105 -17.46520 -16.54023 -16.03971 -15.60717 -15.44538 -15.09472 -15.06971 -14.94903 -14.58808 -14.24449 -13.80054 -13.46041 -13.31679 -13.00612 -12.82180 -12.70526 -12.66421 -12.36201 -11.86997 -11.77329 -11.58888 -11.47018 -11.27211 -11.06960 -10.95998 -10.86768 -10.32804 -10.25892 -10.19985 -9.88941 -9.58598 -9.34549 -9.04890 -8.79186 -8.52769 -8.00824 -7.88566 -7.66841 -6.14498 -4.23811 0.94500 1.52603 1.83372 2.40796 3.18127 3.22501 3.30950 3.33874 3.70427 4.06575 4.30672 4.55196 4.56519 4.64616 4.67592 4.92714 5.01935 5.07954 5.11428 5.17482 5.27765 5.34005 5.41920 5.49255 5.70507 5.71249 5.80174 6.11320 6.34373 6.40370 6.47461 6.49769 6.62813 6.66160 6.74971 7.01598 7.10992 7.24861 7.34441 7.36886 7.44608 7.63059 7.84968 7.96869 8.16988 8.71709 8.82747 9.23325 9.44726 10.90852 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032332 B = 0.002106 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.811315 B =13289.251942 C =13423.694726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 S -0.258 6.258 4 C -0.034 4.034 5 C -0.109 4.109 6 C -0.080 4.080 7 C -0.121 4.121 8 C 0.190 3.810 9 N -0.698 5.698 10 C 0.692 3.308 11 O -0.575 6.575 12 N -0.718 5.718 13 C 0.286 3.714 14 H 0.050 0.950 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.881 5.881 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.158 4.158 26 C -0.081 4.081 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.402 0.598 37 H 0.386 0.614 38 H 0.264 0.736 39 H 0.030 0.970 40 H 0.099 0.901 41 H 0.021 0.979 42 H 0.049 0.951 43 H 0.038 0.962 44 H 0.124 0.876 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 -15.778 -10.509 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.244 4.244 3 S -0.029 6.029 4 C -0.182 4.182 5 C -0.112 4.112 6 C -0.100 4.100 7 C -0.141 4.141 8 C 0.093 3.907 9 N -0.346 5.346 10 C 0.393 3.607 11 O -0.452 6.452 12 N -0.369 5.369 13 C 0.184 3.816 14 H 0.068 0.932 15 C -0.572 4.572 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.167 4.167 24 C -0.192 4.192 25 C -0.179 4.179 26 C -0.101 4.101 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.237 0.763 37 H 0.218 0.782 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.117 0.883 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.142 0.858 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.917 -15.495 -9.459 23.496 hybrid contribution 0.778 0.471 -0.661 1.124 sum -14.139 -15.024 -10.120 22.980 Atomic orbital electron populations 1.21501 0.92318 1.02372 1.03252 1.23323 1.00223 0.96194 1.04684 1.87301 1.05672 1.11900 1.98051 1.22194 0.92706 0.97984 1.05277 1.19027 1.02745 0.95414 0.93965 1.20898 0.97225 0.94757 0.97146 1.21417 0.98091 0.95914 0.98691 1.17614 0.93712 0.85668 0.93740 1.42904 1.44191 1.14954 1.32508 1.16114 0.78913 0.83542 0.82130 1.90887 1.68765 1.50267 1.35330 1.45844 1.43710 1.16692 1.30653 1.18734 0.83110 0.94210 0.85545 0.93176 1.21256 1.24811 0.90594 1.20576 0.92042 1.24881 0.95143 0.98531 0.95143 1.69909 1.25729 1.34720 1.21492 0.86390 0.77897 0.84780 0.78000 1.19778 1.20876 1.20883 1.21954 1.01622 0.92552 1.00599 1.21811 0.97962 0.98136 1.01337 1.20814 1.04518 0.95971 0.96561 1.20660 0.98009 0.94353 0.97121 0.91714 0.91278 0.91657 0.90309 0.90239 0.89563 0.89461 0.85900 0.83590 0.76308 0.78225 0.92582 0.95105 0.88251 0.96009 0.93142 0.94311 0.85810 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.92 37.16 0.37 -0.46 16 2 C -0.10 -0.67 6.66 37.16 0.25 -0.42 16 3 S -0.26 -2.59 21.72 -107.50 -2.33 -4.92 16 4 C -0.03 -0.32 6.06 36.01 0.22 -0.10 16 5 C -0.11 -1.28 5.14 -104.59 -0.54 -1.82 16 6 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 7 C -0.12 -1.91 8.70 -39.39 -0.34 -2.25 16 8 C 0.19 2.83 6.30 -83.69 -0.53 2.31 16 9 N -0.70 -10.55 5.34 -14.22 -0.08 -10.63 16 10 C 0.69 13.52 6.99 -86.92 -0.61 12.91 16 11 O -0.58 -13.09 10.93 5.29 0.06 -13.03 16 12 N -0.72 -14.45 5.02 -59.81 -0.30 -14.75 16 13 C 0.29 7.05 2.24 -69.08 -0.15 6.89 16 14 H 0.05 1.44 7.57 -51.93 -0.39 1.04 16 15 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 18 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 19 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 24 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 25 C -0.16 -1.93 9.97 -39.40 -0.39 -2.32 16 26 C -0.08 -0.92 9.69 -39.61 -0.38 -1.30 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.09 0.75 8.08 -51.92 -0.42 0.33 16 34 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.15 2.66 6.22 -52.49 -0.33 2.33 16 36 H 0.40 4.71 8.84 -40.82 -0.36 4.35 16 37 H 0.39 6.66 8.56 -40.82 -0.35 6.31 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 41 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 43 H 0.04 0.86 5.66 -51.93 -0.29 0.56 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -30.09 378.54 -11.11 -41.20 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.05 Total: 11.28 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.72 Total: -6.45 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.25 Total: -49.13 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.06 Total: -13.03 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.33 Total: -4.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.09 -11.11 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455858120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.624 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds