Wall clock time and date at job start Tue Mar 31 2020 13:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09001 * 109.47323 * 54.99851 * 3 2 1 5 5 C 1.53004 * 109.46929 * 174.99900 * 3 2 1 6 6 S 1.81395 * 109.47006 * 184.99772 * 5 3 2 7 7 C 1.81395 * 103.00224 * 180.02562 * 6 5 3 8 8 N 1.46508 * 109.46762 * 294.99486 * 3 2 1 9 9 C 1.46489 * 120.00449 * 300.00095 * 8 3 2 10 10 C 1.34775 * 119.99294 * 120.00665 * 8 3 2 11 11 O 1.21585 * 120.00625 * 359.97438 * 10 8 3 12 12 N 1.34779 * 119.99688 * 180.02562 * 10 8 3 13 13 C 1.39960 * 120.00111 * 174.82815 * 12 10 8 14 14 C 1.39287 * 119.94416 * 146.37487 * 13 12 10 15 15 C 1.38492 * 120.42601 * 179.97438 * 14 13 12 16 16 C 1.37678 * 120.31930 * 359.97438 * 15 14 13 17 17 C 1.40734 * 119.88862 * 0.02562 * 16 15 14 18 18 C 1.41408 * 120.21720 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00646 * 151.76898 * 18 17 16 20 20 C 1.39936 * 119.99478 * 331.77163 * 18 17 16 21 21 N 1.30830 * 119.99809 * 348.98274 * 20 18 17 22 22 Si 1.86797 * 120.00064 * 168.99106 * 20 18 17 23 23 H 1.48496 * 109.47361 * 94.98578 * 22 20 18 24 24 H 1.48502 * 109.47220 * 214.98809 * 22 20 18 25 25 H 1.48499 * 109.46991 * 334.98991 * 22 20 18 26 26 C 1.38225 * 119.94610 * 326.09514 * 13 12 10 27 27 H 1.09003 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47046 * 300.00760 * 1 2 3 29 29 H 1.09004 * 109.46696 * 60.00309 * 1 2 3 30 30 H 1.08996 * 109.46711 * 239.99669 * 2 1 3 31 31 H 1.09004 * 109.46696 * 119.99691 * 2 1 3 32 32 H 1.09005 * 109.47102 * 64.99716 * 5 3 2 33 33 H 1.09001 * 109.46723 * 304.99829 * 5 3 2 34 34 H 1.09000 * 109.47365 * 180.02562 * 7 6 5 35 35 H 1.09003 * 109.47102 * 59.99850 * 7 6 5 36 36 H 1.08999 * 109.47014 * 300.00281 * 7 6 5 37 37 H 1.09002 * 109.47087 * 89.99555 * 9 8 3 38 38 H 1.08992 * 109.47597 * 210.00452 * 9 8 3 39 39 H 1.09005 * 109.47423 * 330.00380 * 9 8 3 40 40 H 0.97007 * 119.99851 * 354.82148 * 12 10 8 41 41 H 1.07995 * 119.78905 * 359.97438 * 14 13 12 42 42 H 1.08000 * 119.83830 * 180.02562 * 15 14 13 43 43 H 1.08009 * 120.05654 * 179.97438 * 16 15 14 44 44 H 0.97003 * 119.99263 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.16204 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 16 4.1573 3.1523 0.2744 7 6 5.9549 2.9505 0.4099 8 7 1.6525 2.0974 -1.2520 9 6 2.1140 1.5589 -2.5337 10 6 0.8715 3.1954 -1.2242 11 8 0.4882 3.6422 -0.1604 12 7 0.5146 3.7977 -2.3759 13 6 -0.3829 4.8714 -2.3553 14 6 -0.2530 5.9041 -3.2809 15 6 -1.1358 6.9711 -3.2698 16 6 -2.1527 7.0223 -2.3430 17 6 -2.2963 5.9861 -1.4016 18 6 -3.3385 6.0313 -0.4470 19 1 -3.7457 5.1139 -0.0480 20 6 -3.8425 7.2647 -0.0193 21 7 -3.2164 8.3705 -0.3306 22 14 -5.4089 7.3323 0.9961 23 1 -5.0618 7.3740 2.4394 24 1 -6.1796 8.5498 0.6369 25 1 -6.2305 6.1267 0.7194 26 6 -1.4003 4.9025 -1.4200 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.0031 0.9834 -0.7596 33 1 3.8570 0.8800 1.0114 34 1 6.4243 3.9295 0.5062 35 1 6.3329 2.4521 -0.4828 36 1 6.1877 2.3484 1.2882 37 1 1.3915 0.8311 -2.9033 38 1 2.2133 2.3705 -3.2543 39 1 3.0806 1.0739 -2.3973 40 1 0.8798 3.4869 -3.2192 41 1 0.5413 5.8725 -4.0120 42 1 -1.0265 7.7665 -3.9922 43 1 -2.8385 7.8566 -2.3380 44 1 -3.5656 9.2255 -0.0338 45 1 -1.5043 4.1002 -0.7045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455900645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:11 Heat of formation + Delta-G solvation = -3.723596 kcal Electronic energy + Delta-G solvation = -25299.203004 eV Core-core repulsion = 21828.992725 eV Total energy + Delta-G solvation = -3470.210279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21378 -37.77944 -36.35696 -34.38451 -33.36028 -32.37588 -30.30690 -29.69610 -29.03545 -27.81750 -26.83125 -25.18359 -24.03884 -22.12276 -20.84480 -20.31022 -19.05304 -18.20374 -17.25701 -16.36843 -16.06587 -15.72584 -15.34261 -14.80113 -14.46575 -14.25959 -14.09362 -13.92969 -13.76243 -13.57937 -13.23320 -12.97628 -12.84501 -12.81642 -12.64854 -12.38821 -12.07710 -11.92508 -11.59684 -11.29648 -11.19301 -11.11348 -11.00472 -10.91822 -10.54536 -10.40623 -10.00822 -9.92328 -9.63532 -9.42369 -9.10000 -8.78372 -8.51663 -7.67672 -7.29574 -6.73717 -6.55316 -4.23574 1.56779 2.53164 2.80924 2.90139 3.07925 3.16434 3.21671 3.29658 3.83001 4.06130 4.28927 4.51936 4.79108 4.79632 4.90227 4.93547 4.94469 4.98353 5.06632 5.24771 5.32276 5.43546 5.50907 5.58635 5.68385 5.75052 5.83505 5.87890 6.05606 6.29674 6.33490 6.50095 6.56904 6.92226 6.94128 7.15634 7.21212 7.36119 7.43146 7.79414 7.91434 8.10935 8.21735 8.37549 8.52488 8.78482 9.02616 9.09069 9.18451 10.37521 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.003399 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.880096 B = 8235.179801 C = 8579.397360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.173 3.827 4 H 0.114 0.886 5 C -0.104 4.104 6 S -0.227 6.227 7 C -0.133 4.133 8 N -0.626 5.626 9 C 0.081 3.919 10 C 0.705 3.295 11 O -0.556 6.556 12 N -0.681 5.681 13 C 0.169 3.831 14 C -0.260 4.260 15 C -0.094 4.094 16 C -0.170 4.170 17 C 0.120 3.880 18 C -0.458 4.458 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.802 5.802 22 Si 0.909 3.091 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.206 4.206 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.392 0.608 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.277 0.723 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.611 -15.336 -2.336 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C 0.067 3.933 4 H 0.132 0.868 5 C -0.253 4.253 6 S -0.001 6.001 7 C -0.302 4.302 8 N -0.364 5.364 9 C -0.062 4.062 10 C 0.407 3.593 11 O -0.431 6.431 12 N -0.329 5.329 13 C 0.077 3.923 14 C -0.282 4.282 15 C -0.113 4.113 16 C -0.190 4.190 17 C 0.117 3.883 18 C -0.488 4.488 19 H 0.093 0.907 20 C -0.142 4.142 21 N -0.428 5.428 22 Si 0.734 3.266 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.227 4.227 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.227 0.773 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.138 0.862 44 H 0.088 0.912 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.759 -13.821 -1.484 18.868 hybrid contribution 0.600 -1.143 -0.053 1.292 sum 13.358 -14.964 -1.537 20.118 Atomic orbital electron populations 1.21685 0.94580 1.01199 1.03048 1.21852 0.97329 0.95035 1.02232 1.20660 0.90325 0.93837 0.88505 0.86788 1.23947 1.00050 0.96619 1.04719 1.87828 1.04014 1.11379 1.96841 1.23409 0.96299 1.06206 1.04242 1.46928 1.54199 1.29156 1.06158 1.21610 0.99704 0.99294 0.85623 1.15798 0.78991 0.79766 0.84734 1.90985 1.58330 1.64943 1.28809 1.42728 1.47949 1.34682 1.07498 1.17231 0.89720 0.86858 0.98526 1.20016 1.05186 0.97360 1.05610 1.20450 0.96132 0.96133 0.98578 1.21381 1.00143 1.01729 0.95744 1.17496 0.90332 0.90119 0.90398 1.19530 1.15699 0.92993 1.20586 0.90681 1.25862 0.97511 0.95225 0.95647 1.69818 1.36113 0.98929 1.37990 0.86286 0.81577 0.78672 0.80051 1.19665 1.20204 1.18592 1.20986 0.96303 1.03104 1.02351 0.92863 0.92188 0.92391 0.91724 0.90918 0.90064 0.89247 0.88235 0.90955 0.90869 0.92858 0.91519 0.91396 0.77259 0.89493 0.89150 0.86171 0.91170 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.80 37.16 0.36 -1.31 16 2 C -0.12 -1.16 5.36 -26.73 -0.14 -1.31 16 3 C 0.17 2.09 2.03 -67.93 -0.14 1.96 16 4 H 0.11 1.79 6.90 -51.93 -0.36 1.43 16 5 C -0.10 -1.03 5.35 37.16 0.20 -0.83 16 6 S -0.23 -2.99 22.11 -107.50 -2.38 -5.37 16 7 C -0.13 -1.16 10.76 101.05 1.09 -0.07 16 8 N -0.63 -8.53 1.92 -179.67 -0.35 -8.88 16 9 C 0.08 0.78 9.21 59.84 0.55 1.33 16 10 C 0.71 13.47 8.01 -86.92 -0.70 12.78 16 11 O -0.56 -13.34 13.38 5.29 0.07 -13.27 16 12 N -0.68 -12.94 5.22 -14.27 -0.07 -13.02 16 13 C 0.17 3.99 6.26 -83.76 -0.52 3.47 16 14 C -0.26 -5.96 9.97 -39.10 -0.39 -6.35 16 15 C -0.09 -2.27 10.02 -39.69 -0.40 -2.67 16 16 C -0.17 -4.61 8.66 -38.84 -0.34 -4.95 16 17 C 0.12 3.39 5.55 -106.85 -0.59 2.80 16 18 C -0.46 -12.96 9.06 -37.74 -0.34 -13.31 16 19 H 0.08 2.07 7.87 -52.49 -0.41 1.65 16 20 C 0.07 1.96 5.25 -17.34 -0.09 1.87 16 21 N -0.80 -21.89 10.81 55.55 0.60 -21.29 16 22 Si 0.91 19.80 29.57 -169.99 -5.03 14.77 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 26 C -0.21 -5.52 8.39 -38.69 -0.32 -5.85 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.77 7.75 -51.93 -0.40 0.37 16 30 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.66 6.48 -51.92 -0.34 0.33 16 33 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.62 6.29 -51.93 -0.33 0.29 16 39 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 40 H 0.39 5.92 6.51 -40.82 -0.27 5.65 16 41 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.12 3.34 6.18 -52.48 -0.32 3.01 16 44 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 45 H 0.11 2.97 6.44 -52.48 -0.34 2.63 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -33.25 375.84 -10.11 -43.36 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.85 Total: 10.47 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.78 Total: -12.44 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.18 Total: -43.19 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.07 Total: -13.27 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.38 Total: -5.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.25 -10.11 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455900645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.638 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds