Wall clock time and date at job start Tue Mar 31 2020 13:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 H 1.09007 * 109.47058 * 55.00310 * 3 2 1 5 5 C 1.52997 * 109.47281 * 175.00043 * 3 2 1 6 6 S 1.81400 * 109.47157 * 295.00121 * 3 2 1 7 7 C 1.76198 * 102.99807 * 170.19879 * 6 3 2 8 8 C 1.38962 * 120.01107 * 275.00040 * 7 6 3 9 9 C 1.38030 * 119.98583 * 179.79314 * 8 7 6 10 10 C 1.38869 * 120.01322 * 0.48306 * 9 8 7 11 11 N 1.40199 * 119.99087 * 179.76587 * 10 9 8 12 12 C 1.34776 * 119.99929 * 335.19578 * 11 10 9 13 13 O 1.21593 * 120.00066 * 354.33471 * 12 11 10 14 14 N 1.34774 * 120.00082 * 174.06587 * 12 11 10 15 15 C 1.46499 * 120.00336 * 180.27544 * 14 12 11 16 16 C 1.50701 * 109.47705 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99387 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00542 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99680 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00256 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47187 * 59.99778 * 20 18 16 22 22 H 1.48503 * 109.47206 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47286 * 300.00000 * 20 18 16 24 24 C 1.38827 * 120.02302 * 359.49721 * 10 9 8 25 25 C 1.50698 * 119.99983 * 180.25212 * 24 10 9 26 26 C 1.38073 * 120.00738 * 0.27040 * 24 10 9 27 27 H 1.08997 * 109.46885 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47078 * 299.99843 * 1 2 3 29 29 H 1.09001 * 109.47409 * 60.00188 * 1 2 3 30 30 H 1.09001 * 109.47502 * 240.00432 * 2 1 3 31 31 H 1.09001 * 109.47409 * 119.99812 * 2 1 3 32 32 H 1.08995 * 109.47485 * 185.00465 * 5 3 2 33 33 H 1.09005 * 109.47159 * 305.01167 * 5 3 2 34 34 H 1.09001 * 109.47509 * 65.00647 * 5 3 2 35 35 H 1.07995 * 120.00691 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.99078 * 180.23453 * 9 8 7 37 37 H 0.96997 * 120.00214 * 155.18309 * 11 10 9 38 38 H 0.96999 * 119.99763 * 0.26367 * 14 12 11 39 39 H 1.09010 * 109.46784 * 299.99796 * 15 14 12 40 40 H 1.09006 * 109.47375 * 59.99218 * 15 14 12 41 41 H 0.97008 * 120.00110 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.47288 * 89.99195 * 25 24 10 43 43 H 1.08997 * 109.47595 * 210.00361 * 25 24 10 44 44 H 1.09001 * 109.46540 * 329.99756 * 25 24 10 45 45 H 1.08002 * 120.00688 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5647 1.4445 0.1257 6 16 1.5600 2.2536 -1.5500 7 6 1.9617 3.9434 -1.2540 8 6 1.0536 4.7701 -0.6036 9 6 1.3706 6.0927 -0.3682 10 6 2.5926 6.5999 -0.7901 11 7 2.9121 7.9446 -0.5551 12 6 1.9292 8.8532 -0.3982 13 8 0.7690 8.5283 -0.5621 14 7 2.2318 10.1207 -0.0542 15 6 1.1630 11.1070 0.1223 16 6 1.7633 12.4357 0.5034 17 1 2.8339 12.5354 0.6044 18 6 0.9458 13.5240 0.7230 19 7 -0.3579 13.4026 0.5995 20 14 1.6899 15.1707 1.1960 21 1 2.6106 15.6244 0.1228 22 1 0.6064 16.1704 1.3748 23 1 2.4441 15.0264 2.4670 24 6 3.5004 5.7743 -1.4395 25 6 4.8287 6.3237 -1.8921 26 6 3.1862 4.4499 -1.6712 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9207 2.4708 0.2151 33 1 3.8570 0.8800 1.0112 34 1 4.0029 0.9839 -0.7597 35 1 0.1016 4.3769 -0.2791 36 1 0.6665 6.7343 0.1406 37 1 3.8405 8.2210 -0.5053 38 1 3.1573 10.3799 0.0767 39 1 0.6084 11.2125 -0.8102 40 1 0.4879 10.7741 0.9108 41 1 -0.9332 14.1682 0.7544 42 1 5.5632 6.2001 -1.0963 43 1 5.1608 5.7860 -2.7801 44 1 4.7226 7.3828 -2.1272 45 1 3.8922 3.8078 -2.1768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488380949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:06 Heat of formation + Delta-G solvation = -25.016243 kcal Electronic energy + Delta-G solvation = -23982.486638 eV Core-core repulsion = 20511.353041 eV Total energy + Delta-G solvation = -3471.133597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45596 -38.50017 -35.94659 -34.75624 -34.30243 -32.60383 -32.43618 -30.60693 -29.57823 -27.35552 -26.72585 -24.10924 -23.58464 -22.31097 -21.74670 -21.27745 -20.32826 -18.33395 -17.57767 -17.01079 -16.23818 -16.10409 -15.43266 -14.95452 -14.81076 -14.45353 -14.22844 -14.16576 -13.95459 -13.82410 -13.63101 -13.25164 -13.13606 -13.06345 -12.44423 -12.38006 -12.18788 -12.05301 -12.02110 -11.62938 -11.60193 -11.30433 -11.23643 -11.03703 -11.02737 -10.94840 -10.56888 -10.35394 -9.82906 -9.49978 -9.47744 -8.81560 -8.72624 -8.15262 -7.84234 -7.68682 -6.22196 -4.29801 0.95110 1.40250 1.78678 2.56686 3.02877 3.21553 3.27038 3.28596 3.49404 3.92801 4.26516 4.41401 4.58904 4.70975 4.82287 4.84769 4.86026 5.11728 5.14018 5.14620 5.23444 5.30415 5.32145 5.45592 5.47425 5.49919 5.61622 5.63775 5.68081 5.81648 5.84147 5.89170 6.03646 6.05755 6.13823 6.36953 6.41075 6.59802 6.94588 7.08790 7.30067 7.41593 7.44493 7.73129 7.91623 8.58417 8.74577 9.06710 9.36990 10.87808 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.002202 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.802084 B =12714.257342 C =13327.813791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 C -0.073 4.073 4 H 0.086 0.914 5 C -0.145 4.145 6 S -0.151 6.151 7 C -0.148 4.148 8 C -0.055 4.055 9 C -0.139 4.139 10 C 0.212 3.788 11 N -0.691 5.691 12 C 0.689 3.311 13 O -0.577 6.577 14 N -0.719 5.719 15 C 0.266 3.734 16 C -0.546 4.546 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.141 4.141 25 C -0.111 4.111 26 C -0.048 4.048 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.404 0.596 38 H 0.389 0.611 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 -23.959 -1.706 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.141 4.141 3 C -0.201 4.201 4 H 0.104 0.896 5 C -0.204 4.204 6 S 0.083 5.917 7 C -0.260 4.260 8 C -0.076 4.076 9 C -0.161 4.161 10 C 0.114 3.886 11 N -0.337 5.337 12 C 0.389 3.611 13 O -0.455 6.455 14 N -0.371 5.371 15 C 0.145 3.855 16 C -0.584 4.584 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.146 4.146 25 C -0.168 4.168 26 C -0.069 4.069 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.173 0.827 37 H 0.240 0.760 38 H 0.221 0.779 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.246 -24.479 -2.716 25.973 hybrid contribution 1.714 1.990 1.414 2.983 sum 9.960 -22.490 -1.301 24.631 Atomic orbital electron populations 1.21867 0.95005 1.01673 1.02963 1.21361 0.96741 0.93406 1.02592 1.23417 0.99174 0.99174 0.98349 0.89571 1.22077 0.93508 1.02528 1.02323 1.85310 1.83945 0.99364 1.23097 1.21375 0.98136 0.97251 1.09242 1.21411 0.98129 0.92727 0.95329 1.21596 0.97348 0.95287 1.01873 1.17618 0.94515 0.82536 0.93927 1.43044 1.09798 1.05871 1.74954 1.16186 0.84528 0.81412 0.78971 1.90861 1.17926 1.79019 1.57649 1.45827 1.12169 1.08156 1.70906 1.19081 0.84772 0.84225 0.97428 1.21149 0.93641 0.94063 1.49577 0.91916 1.24943 0.94767 0.99311 0.94947 1.69964 1.02988 1.31508 1.47629 0.86443 0.78699 0.82538 0.79036 1.20050 1.21015 1.20058 1.19547 0.97869 0.94261 1.02896 1.20686 0.93337 1.01330 1.01411 1.21075 0.94982 0.93790 0.97055 0.92713 0.92617 0.91288 0.91229 0.90877 0.92253 0.92148 0.91548 0.85309 0.82659 0.76017 0.77853 0.95412 0.95398 0.92285 0.91305 0.91134 0.91630 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.74 37.16 0.36 -0.81 16 2 C -0.10 -0.74 5.40 -26.73 -0.14 -0.88 16 3 C -0.07 -0.64 2.77 -26.73 -0.07 -0.71 16 4 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 5 C -0.15 -1.14 9.10 37.16 0.34 -0.80 16 6 S -0.15 -1.65 19.87 -107.50 -2.14 -3.79 16 7 C -0.15 -1.86 5.43 -39.06 -0.21 -2.08 16 8 C -0.05 -0.76 9.78 -39.39 -0.39 -1.15 16 9 C -0.14 -2.23 8.71 -39.42 -0.34 -2.57 16 10 C 0.21 3.15 6.42 -83.58 -0.54 2.62 16 11 N -0.69 -10.31 4.99 -14.17 -0.07 -10.38 16 12 C 0.69 13.61 8.37 -86.92 -0.73 12.88 16 13 O -0.58 -13.60 13.51 5.28 0.07 -13.53 16 14 N -0.72 -14.63 5.55 -66.41 -0.37 -15.00 16 15 C 0.27 6.86 5.43 -5.19 -0.03 6.83 16 16 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 17 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -25.62 13.29 55.43 0.74 -24.88 16 20 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 24 C -0.14 -1.71 5.89 -104.47 -0.62 -2.33 16 25 C -0.11 -1.00 9.44 36.00 0.34 -0.66 16 26 C -0.05 -0.56 9.13 -39.39 -0.36 -0.92 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.59 7.13 -51.93 -0.37 0.22 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.16 2.89 5.78 -52.48 -0.30 2.58 16 37 H 0.40 4.62 7.40 -40.82 -0.30 4.32 16 38 H 0.39 6.63 8.34 -40.82 -0.34 6.29 16 39 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 44 H 0.06 0.60 6.97 -51.93 -0.36 0.24 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -31.17 383.25 -10.92 -42.09 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.10 Total: 7.93 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.80 Total: -3.68 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.30 Total: -50.26 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.07 Total: -13.53 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.14 Total: -3.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.17 -10.92 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488380949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.071 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds