Wall clock time and date at job start Tue Mar 31 2020 13:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 H 1.09007 * 109.47058 * 55.00310 * 3 2 1 5 5 C 1.52997 * 109.47281 * 175.00043 * 3 2 1 6 6 S 1.81400 * 109.47157 * 295.00121 * 3 2 1 7 7 C 1.76198 * 102.99807 * 170.19879 * 6 3 2 8 8 C 1.38962 * 120.01107 * 275.00040 * 7 6 3 9 9 C 1.38030 * 119.98583 * 179.79314 * 8 7 6 10 10 C 1.38869 * 120.01322 * 0.48306 * 9 8 7 11 11 N 1.40199 * 119.99087 * 179.76587 * 10 9 8 12 12 C 1.34776 * 119.99929 * 335.19578 * 11 10 9 13 13 O 1.21593 * 120.00066 * 354.33471 * 12 11 10 14 14 N 1.34774 * 120.00082 * 174.06587 * 12 11 10 15 15 C 1.46499 * 120.00336 * 180.27544 * 14 12 11 16 16 C 1.50701 * 109.47705 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99387 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00542 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99680 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00256 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47187 * 59.99778 * 20 18 16 22 22 H 1.48503 * 109.47206 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47286 * 300.00000 * 20 18 16 24 24 C 1.38827 * 120.02302 * 359.49721 * 10 9 8 25 25 C 1.50698 * 119.99983 * 180.25212 * 24 10 9 26 26 C 1.38073 * 120.00738 * 0.27040 * 24 10 9 27 27 H 1.08997 * 109.46885 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47078 * 299.99843 * 1 2 3 29 29 H 1.09001 * 109.47409 * 60.00188 * 1 2 3 30 30 H 1.09001 * 109.47502 * 240.00432 * 2 1 3 31 31 H 1.09001 * 109.47409 * 119.99812 * 2 1 3 32 32 H 1.08995 * 109.47485 * 185.00465 * 5 3 2 33 33 H 1.09005 * 109.47159 * 305.01167 * 5 3 2 34 34 H 1.09001 * 109.47509 * 65.00647 * 5 3 2 35 35 H 1.07995 * 120.00691 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.99078 * 180.23453 * 9 8 7 37 37 H 0.96997 * 120.00214 * 155.18309 * 11 10 9 38 38 H 0.96999 * 119.99763 * 0.26367 * 14 12 11 39 39 H 1.09010 * 109.46784 * 299.99796 * 15 14 12 40 40 H 1.09006 * 109.47375 * 59.99218 * 15 14 12 41 41 H 0.97008 * 120.00110 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.47288 * 89.99195 * 25 24 10 43 43 H 1.08997 * 109.47595 * 210.00361 * 25 24 10 44 44 H 1.09001 * 109.46540 * 329.99756 * 25 24 10 45 45 H 1.08002 * 120.00688 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5647 1.4445 0.1257 6 16 1.5600 2.2536 -1.5500 7 6 1.9617 3.9434 -1.2540 8 6 1.0536 4.7701 -0.6036 9 6 1.3706 6.0927 -0.3682 10 6 2.5926 6.5999 -0.7901 11 7 2.9121 7.9446 -0.5551 12 6 1.9292 8.8532 -0.3982 13 8 0.7690 8.5283 -0.5621 14 7 2.2318 10.1207 -0.0542 15 6 1.1630 11.1070 0.1223 16 6 1.7633 12.4357 0.5034 17 1 2.8339 12.5354 0.6044 18 6 0.9458 13.5240 0.7230 19 7 -0.3579 13.4026 0.5995 20 14 1.6899 15.1707 1.1960 21 1 2.6106 15.6244 0.1228 22 1 0.6064 16.1704 1.3748 23 1 2.4441 15.0264 2.4670 24 6 3.5004 5.7743 -1.4395 25 6 4.8287 6.3237 -1.8921 26 6 3.1862 4.4499 -1.6712 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9207 2.4708 0.2151 33 1 3.8570 0.8800 1.0112 34 1 4.0029 0.9839 -0.7597 35 1 0.1016 4.3769 -0.2791 36 1 0.6665 6.7343 0.1406 37 1 3.8405 8.2210 -0.5053 38 1 3.1573 10.3799 0.0767 39 1 0.6084 11.2125 -0.8102 40 1 0.4879 10.7741 0.9108 41 1 -0.9332 14.1682 0.7544 42 1 5.5632 6.2001 -1.0963 43 1 5.1608 5.7860 -2.7801 44 1 4.7226 7.3828 -2.1272 45 1 3.8922 3.8078 -2.1768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488380949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:05 Heat of formation + Delta-G solvation = -42.925336 kcal Electronic energy + Delta-G solvation = -23983.263234 eV Core-core repulsion = 20511.353041 eV Total energy + Delta-G solvation = -3471.910194 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82115 -39.82805 -36.59085 -36.36319 -35.90447 -34.40376 -33.61418 -31.39093 -30.69723 -29.07290 -27.80918 -25.22240 -24.72094 -23.83680 -22.67378 -22.19551 -21.82656 -19.92456 -18.86118 -18.02764 -17.94365 -17.08265 -16.79417 -16.75122 -16.19313 -15.80297 -15.33999 -15.03492 -14.91734 -14.81020 -14.64557 -14.48574 -14.15800 -14.06577 -14.01397 -13.91307 -13.17336 -13.14797 -12.93066 -12.81291 -12.70047 -12.50667 -12.32026 -12.24390 -12.17219 -11.96732 -11.78760 -11.67244 -11.52725 -11.10379 -10.82507 -10.78118 -9.96315 -9.77408 -9.00816 -8.63272 -8.30206 -6.47025 -0.08750 0.34562 0.84622 1.42417 1.47243 1.53471 1.58171 1.71440 2.04460 2.37664 2.74002 3.05034 3.30038 3.77063 3.79209 3.87020 3.95035 4.23205 4.24638 4.28553 4.44707 4.49884 4.61008 4.63327 4.74342 4.81770 4.89033 4.91102 4.99926 5.01106 5.06884 5.11715 5.19660 5.22224 5.22329 5.27983 5.30518 5.35784 5.40151 5.44778 5.45576 5.61705 5.79883 5.92092 6.10970 6.63275 7.08174 7.22834 7.50647 8.81664 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.002202 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.802084 B =12714.257342 C =13327.813791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.099 4.099 3 C -0.067 4.067 4 H 0.077 0.923 5 C -0.142 4.142 6 S -0.160 6.160 7 C -0.144 4.144 8 C -0.066 4.066 9 C -0.161 4.161 10 C 0.184 3.816 11 N -0.668 5.668 12 C 0.690 3.310 13 O -0.621 6.621 14 N -0.712 5.712 15 C 0.285 3.715 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.262 1.262 24 C -0.124 4.124 25 C -0.111 4.111 26 C -0.046 4.046 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.424 0.576 38 H 0.408 0.592 39 H -0.011 1.011 40 H -0.010 1.010 41 H 0.269 0.731 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.518 -25.170 -1.848 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.138 4.138 3 C -0.195 4.195 4 H 0.095 0.905 5 C -0.201 4.201 6 S 0.073 5.927 7 C -0.257 4.257 8 C -0.087 4.087 9 C -0.183 4.183 10 C 0.087 3.913 11 N -0.316 5.316 12 C 0.390 3.610 13 O -0.501 6.501 14 N -0.366 5.366 15 C 0.162 3.838 16 C -0.594 4.594 17 H 0.104 0.896 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.186 1.186 24 C -0.129 4.129 25 C -0.168 4.168 26 C -0.067 4.067 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.263 0.737 38 H 0.244 0.756 39 H 0.007 0.993 40 H 0.008 0.992 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.847 -25.737 -2.864 28.478 hybrid contribution 0.586 2.129 1.440 2.636 sum 12.433 -23.609 -1.425 26.720 Atomic orbital electron populations 1.21867 0.95406 1.02236 1.02094 1.21385 0.96365 0.92349 1.03665 1.23505 1.00141 0.99598 0.96252 0.90472 1.22055 0.92336 1.02272 1.03453 1.85337 1.84494 0.98035 1.24808 1.21594 0.98047 0.98220 1.07802 1.21432 0.98844 0.92225 0.96201 1.21395 0.97789 0.95942 1.03193 1.17793 0.95111 0.82482 0.95888 1.42605 1.09632 1.05263 1.74122 1.16280 0.84705 0.81588 0.78396 1.90849 1.20284 1.79760 1.59234 1.45353 1.11940 1.07784 1.71488 1.18485 0.85462 0.85750 0.94110 1.21554 0.94823 0.94000 1.49064 0.89624 1.26062 0.95057 1.03868 0.94603 1.70135 1.04869 1.32873 1.48928 0.85186 0.77796 0.76772 0.79329 1.18615 1.21210 1.18648 1.19884 0.98430 0.93907 1.00716 1.20809 0.91706 1.01342 1.02946 1.21428 0.94931 0.93901 0.96436 0.91465 0.92937 0.92719 0.90798 0.88998 0.93232 0.90530 0.90817 0.85157 0.86210 0.73717 0.75623 0.99320 0.99245 0.92208 0.88989 0.89217 0.91660 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.74 71.98 0.70 -1.46 16 2 C -0.10 -1.21 5.40 30.59 0.17 -1.05 16 3 C -0.07 -1.06 2.77 30.59 0.08 -0.97 16 4 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 5 C -0.14 -1.85 9.10 71.98 0.65 -1.19 16 6 S -0.16 -3.32 19.87 -56.49 -1.12 -4.44 16 7 C -0.14 -3.55 5.43 22.61 0.12 -3.42 16 8 C -0.07 -1.91 9.78 22.39 0.22 -1.69 16 9 C -0.16 -5.48 8.71 22.37 0.19 -5.29 16 10 C 0.18 5.50 6.42 38.09 0.24 5.74 16 11 N -0.67 -19.95 4.99 -317.00 -1.58 -21.54 16 12 C 0.69 28.39 8.37 179.06 1.50 29.89 16 13 O -0.62 -31.40 13.51 -4.01 -0.05 -31.45 16 14 N -0.71 -29.76 5.55 -482.27 -2.68 -32.44 16 15 C 0.28 15.47 5.43 85.63 0.46 15.94 16 16 C -0.56 -29.73 9.28 25.60 0.24 -29.49 16 17 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -55.66 13.29 21.44 0.28 -55.38 16 20 Si 0.99 41.70 29.54 68.60 2.03 43.73 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 C -0.12 -2.79 5.89 -19.76 -0.12 -2.91 16 25 C -0.11 -1.62 9.44 71.24 0.67 -0.94 16 26 C -0.05 -0.98 9.13 22.39 0.20 -0.78 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.90 7.13 -2.39 -0.02 0.89 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.75 7.68 -2.39 -0.02 0.73 16 33 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.12 4.94 5.78 -2.91 -0.02 4.93 16 37 H 0.42 9.05 7.40 -92.71 -0.69 8.37 16 38 H 0.41 13.68 8.34 -92.71 -0.77 12.90 16 39 H -0.01 -0.69 8.14 -2.38 -0.02 -0.70 16 40 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 41 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 44 H 0.06 0.99 6.97 -2.39 -0.02 0.97 16 45 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -71.75 383.25 2.22 -69.53 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.46 Total: 28.94 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.81 Total: 3.05 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -3.98 Total: -109.35 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.05 Total: -31.45 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.12 Total: -4.44 kcal Total: -71.75 2.22 -69.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488380949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.604 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds