Wall clock time and date at job start Tue Mar 31 2020 13:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 H 1.08998 * 109.47149 * 304.99314 * 3 2 1 5 5 C 1.53006 * 109.47089 * 184.99715 * 3 2 1 6 6 S 1.81394 * 109.47515 * 64.99583 * 3 2 1 7 7 C 1.76201 * 103.00159 * 191.61851 * 6 3 2 8 8 C 1.38966 * 120.00717 * 6.58464 * 7 6 3 9 9 C 1.38030 * 119.98808 * 179.97438 * 8 7 6 10 10 C 1.38877 * 120.01064 * 359.97438 * 9 8 7 11 11 N 1.40194 * 119.98978 * 180.02562 * 10 9 8 12 12 C 1.34779 * 119.99936 * 20.25444 * 11 10 9 13 13 O 1.21588 * 120.00015 * 6.07663 * 12 11 10 14 14 N 1.34781 * 119.99691 * 186.07119 * 12 11 10 15 15 C 1.46504 * 119.99549 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.46898 * 180.02562 * 15 14 12 17 17 H 1.08009 * 120.00332 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46876 * 90.00053 * 20 18 16 22 22 H 1.48493 * 109.46821 * 210.00080 * 20 18 16 23 23 H 1.48503 * 109.46897 * 329.99832 * 20 18 16 24 24 C 1.38831 * 120.02110 * 0.04127 * 10 9 8 25 25 C 1.50702 * 119.99614 * 179.97438 * 24 10 9 26 26 C 1.38070 * 120.00974 * 359.96339 * 24 10 9 27 27 H 1.08992 * 109.47689 * 300.00658 * 1 2 3 28 28 H 1.09005 * 109.46858 * 60.00750 * 1 2 3 29 29 H 1.08999 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47689 * 239.99342 * 2 1 3 31 31 H 1.09005 * 109.46858 * 119.99250 * 2 1 3 32 32 H 1.09001 * 109.47177 * 57.14973 * 5 3 2 33 33 H 1.08997 * 109.47171 * 177.15346 * 5 3 2 34 34 H 1.08996 * 109.46868 * 297.15818 * 5 3 2 35 35 H 1.07992 * 120.00650 * 359.70515 * 8 7 6 36 36 H 1.07992 * 119.99695 * 179.97438 * 9 8 7 37 37 H 0.97007 * 120.00086 * 200.24761 * 11 10 9 38 38 H 0.96996 * 120.00550 * 0.02562 * 14 12 11 39 39 H 1.09003 * 109.46840 * 300.00390 * 15 14 12 40 40 H 1.08997 * 109.47429 * 60.00180 * 15 14 12 41 41 H 0.97003 * 119.99904 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.47240 * 269.98237 * 25 24 10 43 43 H 1.09001 * 109.46737 * 29.98317 * 25 24 10 44 44 H 1.08994 * 109.46855 * 149.98243 * 25 24 10 45 45 H 1.08001 * 120.00728 * 180.02562 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 16 1.5600 2.2536 1.5499 7 6 1.9115 3.9511 1.2343 8 6 2.3020 4.3554 -0.0366 9 6 2.5767 5.6854 -0.2835 10 6 2.4625 6.6195 0.7378 11 7 2.7412 7.9702 0.4865 12 6 2.7179 8.4393 -0.7768 13 8 2.3484 7.7208 -1.6854 14 7 3.1041 9.7050 -1.0329 15 6 3.0782 10.2151 -2.4060 16 6 3.5545 11.6447 -2.4198 17 1 3.8468 12.1255 -1.4979 18 6 3.6171 12.3391 -3.6094 19 7 3.2616 11.7535 -4.7320 20 14 4.2068 14.1115 -3.6264 21 1 5.6791 14.1415 -3.8183 22 1 3.5476 14.8418 -4.7387 23 1 3.8624 14.7601 -2.3356 24 6 2.0728 6.2160 2.0078 25 6 1.9497 7.2300 3.1158 26 6 1.7979 4.8859 2.2557 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 3.8554 0.9127 -1.0317 33 1 3.9239 2.4722 -0.1765 34 1 4.0014 0.9494 0.7418 35 1 2.3946 3.6285 -0.8299 36 1 2.8806 5.9996 -1.2710 37 1 2.9507 8.5673 1.2218 38 1 3.3992 10.2781 -0.3081 39 1 3.7330 9.6082 -3.0314 40 1 2.0601 10.1672 -2.7923 41 1 3.3053 12.2421 -5.5688 42 1 2.9037 7.3181 3.6354 43 1 1.6748 8.1970 2.6944 44 1 1.1814 6.9084 3.8188 45 1 1.4943 4.5721 3.2435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488380951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:09 Heat of formation + Delta-G solvation = -21.581696 kcal Electronic energy + Delta-G solvation = -24060.752974 eV Core-core repulsion = 20589.768310 eV Total energy + Delta-G solvation = -3470.984664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.41082 -38.46837 -36.13154 -34.72129 -34.28966 -32.59831 -32.41825 -30.56782 -29.63502 -27.31178 -26.69747 -24.14641 -23.60497 -22.39040 -21.50748 -21.40604 -20.29447 -18.26800 -17.58312 -17.06046 -16.39964 -16.06764 -15.34028 -14.93388 -14.84306 -14.40192 -14.29917 -14.21285 -13.90144 -13.78004 -13.58432 -13.21495 -13.12116 -12.91755 -12.54835 -12.34979 -12.20228 -12.04873 -11.97546 -11.66144 -11.59606 -11.32772 -11.23885 -11.01472 -11.00965 -10.94927 -10.55550 -10.35160 -10.12102 -9.45129 -9.38489 -8.81179 -8.70481 -8.64319 -7.98223 -7.07147 -6.21540 -4.28760 1.27028 1.44873 1.49262 2.36512 3.09301 3.21229 3.27997 3.30451 3.49984 3.97554 4.27484 4.34371 4.51417 4.71862 4.79266 4.85857 4.91235 5.06390 5.14900 5.15648 5.18988 5.29420 5.30905 5.45747 5.49647 5.53640 5.58700 5.64901 5.69674 5.78692 5.87999 5.89919 6.00662 6.08559 6.18989 6.40994 6.44081 6.63910 6.99927 7.17290 7.34268 7.44611 7.46147 7.76248 7.93322 8.61603 8.76842 9.10644 9.38215 10.88575 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.002319 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.403016 B =12070.306644 C =12978.795141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.077 4.077 4 H 0.094 0.906 5 C -0.152 4.152 6 S -0.127 6.127 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.184 3.816 11 N -0.689 5.689 12 C 0.690 3.310 13 O -0.579 6.579 14 N -0.720 5.720 15 C 0.265 3.735 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.077 4.077 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.162 0.838 37 H 0.403 0.597 38 H 0.389 0.611 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -19.224 15.086 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.141 4.141 3 C -0.206 4.206 4 H 0.112 0.888 5 C -0.211 4.211 6 S 0.115 5.885 7 C -0.225 4.225 8 C -0.136 4.136 9 C -0.141 4.141 10 C 0.085 3.915 11 N -0.335 5.335 12 C 0.390 3.610 13 O -0.457 6.457 14 N -0.372 5.372 15 C 0.145 3.855 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.122 4.122 25 C -0.168 4.168 26 C -0.101 4.101 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.142 0.858 36 H 0.179 0.821 37 H 0.239 0.761 38 H 0.221 0.779 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.596 -20.325 14.899 25.334 hybrid contribution 1.019 2.245 -0.604 2.538 sum -1.577 -18.080 14.295 23.102 Atomic orbital electron populations 1.21880 0.94943 1.01815 1.02977 1.21375 0.96763 0.93099 1.02904 1.23464 0.99728 0.99462 0.97955 0.88769 1.22162 0.92917 1.03307 1.02693 1.85141 1.81901 0.98730 1.22740 1.21452 1.07680 0.96551 0.96830 1.21091 1.01197 0.96331 0.94984 1.21691 1.00257 0.91038 1.01144 1.17492 0.97489 0.82991 0.93530 1.42949 1.73112 1.08708 1.08702 1.16180 0.79384 0.83441 0.81992 1.90795 1.53845 1.57158 1.43947 1.45823 1.67564 1.10452 1.13316 1.19070 0.97844 0.93477 0.75133 1.21196 1.46263 0.96686 0.94162 0.91863 1.24945 0.94982 0.98861 0.95189 1.69970 1.46395 1.37301 0.98474 0.86392 0.78846 0.83661 0.77872 1.20429 1.20962 1.19751 1.19398 1.03848 0.94806 0.94122 1.20695 1.02370 0.97426 0.96341 1.20271 1.01089 0.90914 0.97798 0.91426 0.92471 0.92536 0.90472 0.91130 0.91655 0.91561 0.91401 0.85819 0.82071 0.76107 0.77862 0.95433 0.95441 0.92365 0.91156 0.91647 0.91143 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.74 37.16 0.36 -0.82 16 2 C -0.10 -0.75 5.40 -26.73 -0.14 -0.89 16 3 C -0.08 -0.70 2.03 -26.73 -0.05 -0.75 16 4 H 0.09 0.91 6.71 -51.92 -0.35 0.56 16 5 C -0.15 -1.29 8.83 37.16 0.33 -0.97 16 6 S -0.13 -1.38 20.10 -107.50 -2.16 -3.54 16 7 C -0.11 -1.45 6.06 -39.06 -0.24 -1.68 16 8 C -0.11 -1.57 8.15 -39.39 -0.32 -1.90 16 9 C -0.12 -1.96 8.77 -39.42 -0.35 -2.30 16 10 C 0.18 2.82 6.48 -83.58 -0.54 2.28 16 11 N -0.69 -10.52 5.08 -14.17 -0.07 -10.59 16 12 C 0.69 13.76 8.40 -86.91 -0.73 13.03 16 13 O -0.58 -13.66 13.28 5.29 0.07 -13.59 16 14 N -0.72 -14.77 5.55 -66.41 -0.37 -15.14 16 15 C 0.27 6.88 5.43 -5.19 -0.03 6.85 16 16 C -0.54 -14.47 9.28 -34.44 -0.32 -14.78 16 17 H 0.06 1.56 7.60 -52.48 -0.40 1.17 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 20 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.12 -1.48 5.89 -104.46 -0.62 -2.09 16 25 C -0.11 -1.04 9.45 36.01 0.34 -0.70 16 26 C -0.08 -0.95 9.44 -39.39 -0.37 -1.32 16 27 H 0.07 0.56 7.13 -51.93 -0.37 0.19 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.65 6.28 -51.93 -0.33 0.33 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.12 1.55 4.94 -52.49 -0.26 1.29 16 36 H 0.16 3.07 5.47 -52.49 -0.29 2.78 16 37 H 0.40 4.77 7.23 -40.82 -0.30 4.47 16 38 H 0.39 6.72 8.34 -40.82 -0.34 6.37 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 44 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 45 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -31.31 375.27 -10.70 -42.01 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.77 Total: 9.02 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.78 Total: -4.39 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.30 Total: -50.67 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.07 Total: -13.59 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.16 Total: -3.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.31 -10.70 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488380951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.430 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds