Wall clock time and date at job start Tue Mar 31 2020 13:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46757 * 208.32172 * 3 2 1 5 5 C 1.36935 * 119.99815 * 263.00924 * 4 3 2 6 6 H 1.07997 * 120.00217 * 213.57586 * 5 4 3 7 7 C 1.38813 * 119.99870 * 33.58378 * 5 4 3 8 8 N 1.31618 * 120.00341 * 5.51160 * 7 5 4 9 9 Si 1.86808 * 119.99985 * 185.51604 * 7 5 4 10 10 H 1.48502 * 109.46657 * 89.99615 * 9 7 5 11 11 H 1.48500 * 109.47363 * 209.99626 * 9 7 5 12 12 H 1.48501 * 109.47106 * 329.99937 * 9 7 5 13 13 C 1.46494 * 120.00175 * 83.01720 * 4 3 2 14 14 C 1.53004 * 109.47253 * 269.99674 * 13 4 3 15 15 C 1.50697 * 109.47070 * 179.97438 * 14 13 4 16 16 O 1.21289 * 120.00215 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99599 * 179.97438 * 15 14 13 18 18 C 1.39614 * 119.99961 * 185.51165 * 17 15 14 19 19 C 1.37823 * 120.29799 * 24.49491 * 18 17 15 20 20 C 1.39161 * 120.75053 * 179.97438 * 19 18 17 21 21 C 1.36160 * 121.08489 * 0.06017 * 20 19 18 22 22 C 1.40510 * 119.95210 * 359.95862 * 21 20 19 23 23 C 1.40575 * 121.20482 * 180.02562 * 22 21 20 24 24 C 1.36101 * 119.66290 * 179.97438 * 23 22 21 25 25 C 1.39355 * 120.97416 * 0.02562 * 24 23 22 26 26 C 1.36143 * 120.96136 * 359.97438 * 25 24 23 27 27 C 1.40380 * 119.67216 * 0.02562 * 26 25 24 28 28 H 4.40641 * 5.51357 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.46679 * 88.32129 * 3 2 1 30 30 H 1.08998 * 109.47046 * 328.31974 * 3 2 1 31 31 H 0.97000 * 120.00220 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47576 * 149.99272 * 13 4 3 33 33 H 1.09000 * 109.47015 * 29.99529 * 13 4 3 34 34 H 1.08998 * 109.46837 * 59.99710 * 14 13 4 35 35 H 1.09002 * 109.46562 * 300.00162 * 14 13 4 36 36 H 0.96996 * 120.00391 * 5.52277 * 17 15 14 37 37 H 1.08005 * 119.62487 * 0.04446 * 19 18 17 38 38 H 1.07999 * 119.45677 * 180.02562 * 20 19 18 39 39 H 1.08007 * 120.02486 * 180.23682 * 21 20 19 40 40 H 1.08005 * 120.17264 * 359.95910 * 23 22 21 41 41 H 1.07998 * 119.51381 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.51745 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.16378 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.2168 0.6553 5 6 3.4976 2.3013 -0.0975 6 1 4.3052 2.9393 0.2296 7 6 2.8281 2.5806 -1.2810 8 7 1.7755 1.8695 -1.6254 9 14 3.4214 3.9658 -2.3851 10 1 4.4084 3.4343 -3.3590 11 1 2.2662 4.5448 -3.1170 12 1 4.0611 5.0195 -1.5570 13 6 3.2325 1.2726 2.1158 14 6 1.9167 1.7948 2.6964 15 6 2.0180 1.8516 4.1988 16 8 3.0420 1.5087 4.7510 17 7 0.9710 2.2845 4.9289 18 6 1.1021 2.4467 6.3094 19 6 2.3424 2.6651 6.8692 20 6 2.4839 2.8286 8.2439 21 6 1.4049 2.7765 9.0727 22 6 0.1227 2.5554 8.5422 23 6 -1.0094 2.4972 9.3734 24 6 -2.2367 2.2820 8.8259 25 6 -2.3896 2.1173 7.4506 26 6 -1.3156 2.1675 6.6155 27 6 -0.0340 2.3878 7.1442 28 1 -1.0502 -0.0005 0.0000 29 1 3.0093 -0.0293 -1.0272 30 1 3.0098 -0.8737 0.5397 31 1 1.3075 2.0650 -2.4523 32 1 4.0455 1.9408 2.3999 33 1 3.4303 0.2739 2.5051 34 1 1.1037 1.1266 2.4124 35 1 1.7189 2.7935 2.3070 36 1 0.1264 2.4832 4.4953 37 1 3.2145 2.7110 6.2336 38 1 3.4657 2.9991 8.6602 39 1 1.5338 2.9095 10.1368 40 1 -0.9059 2.6225 10.4412 41 1 -3.1048 2.2373 9.4669 42 1 -3.3745 1.9473 7.0413 43 1 -1.4490 2.0386 5.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491675278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:18 Heat of formation + Delta-G solvation = 91.436538 kcal Electronic energy + Delta-G solvation = -25723.354356 eV Core-core repulsion = 22121.826579 eV Total energy + Delta-G solvation = -3601.527777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.95023 -39.38855 -36.59431 -36.05812 -34.97152 -32.20813 -31.61050 -31.52425 -30.38160 -29.75963 -28.38547 -26.01894 -24.63422 -23.49181 -23.25291 -22.07801 -20.73156 -19.94384 -18.05237 -17.79585 -17.41831 -16.74120 -16.30393 -16.01781 -15.72279 -15.31862 -14.86776 -14.26363 -14.08769 -13.95709 -13.88518 -13.54839 -13.50741 -13.21740 -12.96400 -12.70160 -12.35409 -12.13960 -11.58574 -11.48508 -11.37058 -11.24256 -11.14059 -11.09032 -10.88728 -10.65712 -10.37551 -10.28396 -10.04044 -9.53413 -9.32213 -8.99812 -8.72431 -8.69771 -8.43546 -7.53084 -6.86754 -5.82431 -3.43841 0.43596 0.92527 1.87579 2.76328 3.04801 3.12172 3.32609 3.39827 3.40608 4.05009 4.16902 4.37345 4.48977 4.51310 4.66815 4.72929 4.86914 5.01140 5.07665 5.20002 5.27985 5.33373 5.41873 5.58882 5.72158 5.75837 5.80366 5.81193 5.83960 5.99365 6.04964 6.21203 6.30880 6.36592 6.37780 6.43282 6.55664 6.68080 6.69422 6.74528 6.92667 7.02153 7.15446 7.40672 7.45742 7.73566 8.26391 8.36219 9.07900 9.19632 9.69122 10.22867 11.17986 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.002832 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.701186 B = 9884.650666 C =10441.393353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.085 4.085 3 C 0.267 3.733 4 N -0.584 5.584 5 C -0.273 4.273 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.904 3.096 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.278 1.278 13 C 0.167 3.833 14 C -0.158 4.158 15 C 0.517 3.483 16 O -0.520 6.520 17 N -0.675 5.675 18 C 0.168 3.832 19 C -0.143 4.143 20 C -0.084 4.084 21 C -0.142 4.142 22 C -0.032 4.032 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.123 4.123 26 C -0.102 4.102 27 C -0.072 4.072 28 H 0.187 0.813 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.256 0.744 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.410 0.590 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 0.619 18.792 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.088 4.088 3 C 0.142 3.858 4 N -0.303 5.303 5 C -0.402 4.402 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.733 3.267 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.204 1.204 13 C 0.040 3.960 14 C -0.201 4.201 15 C 0.307 3.693 16 O -0.395 6.395 17 N -0.318 5.318 18 C 0.071 3.929 19 C -0.165 4.165 20 C -0.103 4.103 21 C -0.161 4.161 22 C -0.033 4.033 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.120 4.120 27 C -0.074 4.074 28 H 0.205 0.795 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.247 0.753 37 H 0.168 0.832 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.912 0.388 18.871 19.780 hybrid contribution -0.900 1.047 -0.973 1.689 sum -6.812 1.435 17.899 19.205 Atomic orbital electron populations 1.24078 0.95215 1.06626 1.06810 1.24163 0.95174 0.94659 0.94822 1.17721 0.83014 0.86862 0.98209 1.43997 1.74651 1.12164 0.99463 1.19165 1.12339 1.05139 1.03583 0.91234 1.25348 0.95395 0.97960 0.99944 1.69935 1.18763 1.40340 1.23712 0.86291 0.77646 0.82126 0.80639 1.21268 1.21708 1.20359 1.20704 0.92603 0.98672 0.84061 1.22624 1.05361 1.05169 0.86916 1.21740 0.82154 0.74435 0.90987 1.90609 1.29601 1.46105 1.73226 1.43872 1.16640 1.65937 1.05367 1.17814 0.93735 0.98039 0.83289 1.21418 0.97607 1.01750 0.95683 1.20753 0.98833 0.97709 0.93006 1.20891 0.91591 1.03857 0.99721 1.17875 0.94143 0.99507 0.91733 1.21003 0.91983 1.00448 0.99292 1.20836 0.97473 0.99904 0.95172 1.20783 0.98761 1.00927 0.93624 1.20873 0.91740 0.99623 0.99803 1.17831 0.92837 1.04015 0.92745 0.79525 0.89389 0.94554 0.93352 0.92571 0.93525 0.89045 0.88400 0.75324 0.83245 0.85744 0.85796 0.85591 0.86092 0.85966 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.66 19.18 29.55 0.57 -6.09 16 2 C -0.09 -1.97 10.00 -37.12 -0.37 -2.34 16 3 C 0.27 6.12 5.45 -6.83 -0.04 6.08 16 4 N -0.58 -13.77 2.48 -176.58 -0.44 -14.21 16 5 C -0.27 -7.04 9.55 -15.06 -0.14 -7.19 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C 0.01 0.37 5.16 -17.43 -0.09 0.28 16 8 N -0.89 -24.04 9.31 55.49 0.52 -23.53 16 9 Si 0.90 20.87 29.56 -169.99 -5.02 15.85 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.17 3.42 4.98 -4.04 -0.02 3.40 16 14 C -0.16 -2.86 5.87 -27.88 -0.16 -3.02 16 15 C 0.52 8.61 7.63 -10.99 -0.08 8.53 16 16 O -0.52 -9.84 13.13 5.55 0.07 -9.77 16 17 N -0.67 -9.43 5.17 -9.64 -0.05 -9.48 16 18 C 0.17 2.39 6.45 -83.38 -0.54 1.85 16 19 C -0.14 -2.08 8.71 -39.39 -0.34 -2.42 16 20 C -0.08 -1.00 9.94 -39.99 -0.40 -1.40 16 21 C -0.14 -1.55 9.75 -39.47 -0.38 -1.93 16 22 C -0.03 -0.38 5.74 -106.85 -0.61 -0.99 16 23 C -0.11 -1.05 9.77 -39.47 -0.39 -1.44 16 24 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 25 C -0.12 -1.18 9.95 -39.92 -0.40 -1.58 16 26 C -0.10 -1.14 9.46 -39.53 -0.37 -1.51 16 27 C -0.07 -0.94 5.75 -106.70 -0.61 -1.55 16 28 H 0.19 3.40 7.80 -54.08 -0.42 2.98 16 29 H 0.09 2.18 7.08 -51.93 -0.37 1.82 16 30 H 0.04 0.74 7.99 -51.93 -0.42 0.32 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.17 8.00 -51.93 -0.42 0.76 16 33 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 34 H 0.09 1.69 7.12 -51.93 -0.37 1.32 16 35 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.41 4.73 7.23 -40.82 -0.30 4.44 16 37 H 0.15 2.39 5.73 -52.48 -0.30 2.09 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 1.18 6.70 -52.48 -0.35 0.83 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -30.27 364.38 -9.65 -39.92 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.43 Total: 8.47 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -4.79 Total: -12.75 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.03 Total: -47.21 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.27 -9.65 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491675278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.356 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds