Wall clock time and date at job start Tue Mar 31 2020 13:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46757 * 208.32172 * 3 2 1 5 5 C 1.36935 * 119.99815 * 263.00924 * 4 3 2 6 6 H 1.07997 * 120.00217 * 213.57586 * 5 4 3 7 7 C 1.38813 * 119.99870 * 33.58378 * 5 4 3 8 8 N 1.31618 * 120.00341 * 5.51160 * 7 5 4 9 9 Si 1.86808 * 119.99985 * 185.51604 * 7 5 4 10 10 H 1.48502 * 109.46657 * 89.99615 * 9 7 5 11 11 H 1.48500 * 109.47363 * 209.99626 * 9 7 5 12 12 H 1.48501 * 109.47106 * 329.99937 * 9 7 5 13 13 C 1.46494 * 120.00175 * 83.01720 * 4 3 2 14 14 C 1.53004 * 109.47253 * 269.99674 * 13 4 3 15 15 C 1.50697 * 109.47070 * 179.97438 * 14 13 4 16 16 O 1.21289 * 120.00215 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99599 * 179.97438 * 15 14 13 18 18 C 1.39614 * 119.99961 * 185.51165 * 17 15 14 19 19 C 1.37823 * 120.29799 * 24.49491 * 18 17 15 20 20 C 1.39161 * 120.75053 * 179.97438 * 19 18 17 21 21 C 1.36160 * 121.08489 * 0.06017 * 20 19 18 22 22 C 1.40510 * 119.95210 * 359.95862 * 21 20 19 23 23 C 1.40575 * 121.20482 * 180.02562 * 22 21 20 24 24 C 1.36101 * 119.66290 * 179.97438 * 23 22 21 25 25 C 1.39355 * 120.97416 * 0.02562 * 24 23 22 26 26 C 1.36143 * 120.96136 * 359.97438 * 25 24 23 27 27 C 1.40380 * 119.67216 * 0.02562 * 26 25 24 28 28 H 4.40641 * 5.51357 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.46679 * 88.32129 * 3 2 1 30 30 H 1.08998 * 109.47046 * 328.31974 * 3 2 1 31 31 H 0.97000 * 120.00220 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47576 * 149.99272 * 13 4 3 33 33 H 1.09000 * 109.47015 * 29.99529 * 13 4 3 34 34 H 1.08998 * 109.46837 * 59.99710 * 14 13 4 35 35 H 1.09002 * 109.46562 * 300.00162 * 14 13 4 36 36 H 0.96996 * 120.00391 * 5.52277 * 17 15 14 37 37 H 1.08005 * 119.62487 * 0.04446 * 19 18 17 38 38 H 1.07999 * 119.45677 * 180.02562 * 20 19 18 39 39 H 1.08007 * 120.02486 * 180.23682 * 21 20 19 40 40 H 1.08005 * 120.17264 * 359.95910 * 23 22 21 41 41 H 1.07998 * 119.51381 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.51745 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.16378 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.2168 0.6553 5 6 3.4976 2.3013 -0.0975 6 1 4.3052 2.9393 0.2296 7 6 2.8281 2.5806 -1.2810 8 7 1.7755 1.8695 -1.6254 9 14 3.4214 3.9658 -2.3851 10 1 4.4084 3.4343 -3.3590 11 1 2.2662 4.5448 -3.1170 12 1 4.0611 5.0195 -1.5570 13 6 3.2325 1.2726 2.1158 14 6 1.9167 1.7948 2.6964 15 6 2.0180 1.8516 4.1988 16 8 3.0420 1.5087 4.7510 17 7 0.9710 2.2845 4.9289 18 6 1.1021 2.4467 6.3094 19 6 2.3424 2.6651 6.8692 20 6 2.4839 2.8286 8.2439 21 6 1.4049 2.7765 9.0727 22 6 0.1227 2.5554 8.5422 23 6 -1.0094 2.4972 9.3734 24 6 -2.2367 2.2820 8.8259 25 6 -2.3896 2.1173 7.4506 26 6 -1.3156 2.1675 6.6155 27 6 -0.0340 2.3878 7.1442 28 1 -1.0502 -0.0005 0.0000 29 1 3.0093 -0.0293 -1.0272 30 1 3.0098 -0.8737 0.5397 31 1 1.3075 2.0650 -2.4523 32 1 4.0455 1.9408 2.3999 33 1 3.4303 0.2739 2.5051 34 1 1.1037 1.1266 2.4124 35 1 1.7189 2.7935 2.3070 36 1 0.1264 2.4832 4.4953 37 1 3.2145 2.7110 6.2336 38 1 3.4657 2.9991 8.6602 39 1 1.5338 2.9095 10.1368 40 1 -0.9059 2.6225 10.4412 41 1 -3.1048 2.2373 9.4669 42 1 -3.3745 1.9473 7.0413 43 1 -1.4490 2.0386 5.5515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491675278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:17 Heat of formation + Delta-G solvation = 77.033958 kcal Electronic energy + Delta-G solvation = -25723.978899 eV Core-core repulsion = 22121.826579 eV Total energy + Delta-G solvation = -3602.152320 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98713 -40.50717 -38.04902 -37.29567 -36.07463 -33.89694 -33.35155 -32.65596 -31.30142 -31.21094 -29.44201 -27.87312 -26.23936 -24.46187 -24.13622 -23.33041 -22.14079 -21.22137 -19.26595 -19.04629 -18.85677 -18.26895 -17.56439 -17.03462 -16.75391 -16.68315 -16.56447 -15.56733 -15.53586 -15.14031 -14.94691 -14.78346 -14.69171 -14.51198 -14.34723 -13.87501 -13.59722 -13.21029 -13.14877 -13.06871 -12.94721 -12.73724 -12.52064 -12.23760 -12.13028 -12.05992 -11.90551 -11.80537 -11.63850 -10.93129 -10.78367 -10.54873 -10.26735 -10.24199 -9.57031 -8.76490 -8.46979 -7.80988 -5.44220 -0.42613 0.06369 0.94616 1.47521 1.49916 1.57183 1.57698 1.93573 2.14740 2.39547 2.55341 2.66356 3.17529 3.31916 3.59932 3.73006 3.85704 3.94630 4.03492 4.13792 4.14799 4.24241 4.32864 4.35463 4.42583 4.50584 4.56781 4.71389 4.78620 4.92706 4.96617 5.00380 5.04837 5.20058 5.26502 5.27999 5.34562 5.43298 5.50709 5.57274 5.65600 5.67256 5.71810 5.93492 6.10517 6.31270 6.38492 7.00726 7.13204 7.44383 7.78208 8.28666 9.16462 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.002832 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.701186 B = 9884.650666 C =10441.393353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.121 4.121 3 C 0.269 3.731 4 N -0.596 5.596 5 C -0.281 4.281 6 H 0.065 0.935 7 C -0.028 4.028 8 N -0.904 5.904 9 Si 0.961 3.039 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.274 1.274 13 C 0.170 3.830 14 C -0.140 4.140 15 C 0.523 3.477 16 O -0.547 6.547 17 N -0.661 5.661 18 C 0.141 3.859 19 C -0.161 4.161 20 C -0.101 4.101 21 C -0.127 4.127 22 C -0.053 4.053 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.126 4.126 27 C -0.086 4.086 28 H 0.219 0.781 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.249 0.751 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.421 0.579 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 0.953 21.165 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.124 4.124 3 C 0.144 3.856 4 N -0.316 5.316 5 C -0.411 4.411 6 H 0.082 0.918 7 C -0.227 4.227 8 N -0.546 5.546 9 Si 0.790 3.210 10 H -0.213 1.213 11 H -0.222 1.222 12 H -0.199 1.199 13 C 0.043 3.957 14 C -0.183 4.183 15 C 0.313 3.687 16 O -0.424 6.424 17 N -0.305 5.305 18 C 0.046 3.954 19 C -0.182 4.182 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.054 4.054 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.088 4.088 28 H 0.235 0.765 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.259 0.741 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.175 0.825 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.975 0.730 21.280 22.737 hybrid contribution -0.360 0.918 -1.552 1.839 sum -8.334 1.648 19.728 21.480 Atomic orbital electron populations 1.24829 0.96106 1.05121 1.05210 1.24340 0.95726 0.96054 0.96277 1.17639 0.83479 0.87421 0.97078 1.44092 1.75031 1.11978 1.00500 1.19334 1.12174 1.05471 1.04087 0.91765 1.25916 0.95768 0.99889 1.01087 1.70107 1.19589 1.41323 1.23584 0.85382 0.76820 0.79867 0.78919 1.21258 1.22220 1.19884 1.20640 0.93493 0.98910 0.82651 1.22242 1.03721 1.04235 0.88053 1.21293 0.82440 0.74630 0.90383 1.90608 1.30723 1.47629 1.73471 1.43559 1.16232 1.65056 1.05665 1.17966 0.94496 0.99918 0.83052 1.21412 0.96998 1.02928 0.96889 1.20950 1.00408 0.98561 0.92038 1.21283 0.90817 1.01326 1.01158 1.18261 0.95491 0.99983 0.91662 1.21364 0.91361 0.99432 1.00552 1.21263 0.98435 0.98465 0.95269 1.21177 0.99302 0.98923 0.94048 1.21050 0.91669 1.01041 1.00654 1.18030 0.92963 1.04412 0.93363 0.76450 0.91968 0.92334 0.94149 0.93502 0.92953 0.89155 0.89463 0.74107 0.85631 0.83861 0.82512 0.82683 0.82955 0.83603 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.38 19.18 74.32 1.43 -10.96 16 2 C -0.12 -5.60 10.00 31.13 0.31 -5.28 16 3 C 0.27 12.54 5.45 84.57 0.46 13.00 16 4 N -0.60 -28.72 2.48 -712.56 -1.76 -30.49 16 5 C -0.28 -14.77 9.55 84.03 0.80 -13.96 16 6 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 7 C -0.03 -1.50 5.16 84.86 0.44 -1.06 16 8 N -0.90 -49.60 9.31 21.65 0.20 -49.40 16 9 Si 0.96 43.45 29.56 68.60 2.03 45.48 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.17 7.12 4.98 86.38 0.43 7.55 16 14 C -0.14 -5.18 5.87 29.85 0.18 -5.00 16 15 C 0.52 17.98 7.63 87.66 0.67 18.65 16 16 O -0.55 -21.55 13.13 -3.06 -0.04 -21.59 16 17 N -0.66 -18.91 5.17 -302.80 -1.57 -20.48 16 18 C 0.14 4.10 6.45 38.51 0.25 4.35 16 19 C -0.16 -4.82 8.71 22.39 0.19 -4.62 16 20 C -0.10 -2.35 9.94 22.01 0.22 -2.14 16 21 C -0.13 -2.51 9.75 22.34 0.22 -2.30 16 22 C -0.05 -1.16 5.74 -21.31 -0.12 -1.28 16 23 C -0.11 -1.72 9.77 22.34 0.22 -1.50 16 24 C -0.12 -1.64 9.95 22.04 0.22 -1.42 16 25 C -0.12 -1.90 9.95 22.05 0.22 -1.68 16 26 C -0.13 -2.63 9.46 22.30 0.21 -2.42 16 27 C -0.09 -2.16 5.75 -21.21 -0.12 -2.28 16 28 H 0.22 7.42 7.80 -4.41 -0.03 7.38 16 29 H 0.06 3.19 7.08 -2.39 -0.02 3.17 16 30 H 0.06 2.40 7.99 -2.39 -0.02 2.38 16 31 H 0.25 13.56 8.31 -92.71 -0.77 12.78 16 32 H 0.05 2.03 8.00 -2.39 -0.02 2.01 16 33 H 0.05 2.11 7.92 -2.39 -0.02 2.09 16 34 H 0.09 3.36 7.12 -2.39 -0.02 3.35 16 35 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.42 9.82 7.23 -92.71 -0.67 9.15 16 37 H 0.13 4.30 5.73 -2.91 -0.02 4.28 16 38 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.13 2.37 6.70 -2.91 -0.02 2.35 16 Total: -1.00 -66.06 364.38 5.43 -60.62 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.36 Total: 28.20 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 6.21 Total: -12.36 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.13 Total: -100.36 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.04 Total: -21.59 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.06 5.43 -60.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491675278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.657 kcal (2) G-P(sol) polarization free energy of solvation -66.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds