Wall clock time and date at job start Tue Mar 31 2020 13:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47410 * 2 1 4 4 N 1.46496 * 109.47263 * 180.02562 * 3 2 1 5 5 C 1.36770 * 120.00086 * 270.00164 * 4 3 2 6 6 H 1.08003 * 120.00204 * 143.50767 * 5 4 3 7 7 C 1.39061 * 120.00121 * 323.51138 * 5 4 3 8 8 N 1.31370 * 119.99811 * 163.21680 * 7 5 4 9 9 Si 1.86794 * 119.99822 * 343.21610 * 7 5 4 10 10 H 1.48495 * 109.47342 * 93.15513 * 9 7 5 11 11 H 1.48507 * 109.47007 * 213.15980 * 9 7 5 12 12 H 1.48504 * 109.47197 * 333.15440 * 9 7 5 13 13 C 1.34777 * 120.00184 * 89.99975 * 4 3 2 14 14 O 1.21841 * 119.99559 * 354.03633 * 13 4 3 15 15 C 1.41337 * 120.00253 * 174.03023 * 13 4 3 16 16 C 1.35721 * 120.00295 * 186.73332 * 15 13 4 17 17 C 1.41645 * 119.99723 * 10.69441 * 16 15 13 18 18 C 1.37145 * 126.19393 * 222.94848 * 17 16 15 19 19 N 1.30952 * 113.82888 * 180.27049 * 18 17 16 20 20 C 1.29353 * 117.50136 * 359.48159 * 19 18 17 21 21 C 1.50699 * 124.67345 * 180.19788 * 20 19 18 22 22 C 1.53003 * 109.46985 * 60.33892 * 21 20 19 23 23 C 1.52991 * 109.47507 * 180.34611 * 21 20 19 24 24 C 1.53007 * 109.46642 * 300.34588 * 21 20 19 25 25 S 1.70917 * 110.66230 * 0.50185 * 20 19 18 26 26 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46816 * 299.99440 * 1 2 3 28 28 H 1.09003 * 109.47439 * 59.99242 * 1 2 3 29 29 H 1.09005 * 109.46816 * 240.00560 * 2 1 3 30 30 H 1.09003 * 109.47439 * 120.00758 * 2 1 3 31 31 H 1.09005 * 109.46674 * 60.00473 * 3 2 1 32 32 H 1.09001 * 109.47017 * 300.00442 * 3 2 1 33 33 H 0.96997 * 119.99447 * 180.02562 * 8 7 5 34 34 H 1.08003 * 120.00192 * 6.73587 * 15 13 4 35 35 H 1.08005 * 119.99977 * 190.70262 * 16 15 13 36 36 H 1.07998 * 123.08822 * 359.97438 * 18 17 16 37 37 H 1.09005 * 109.46557 * 60.00652 * 22 21 20 38 38 H 1.09000 * 109.46914 * 180.02562 * 22 21 20 39 39 H 1.08995 * 109.47230 * 300.00726 * 22 21 20 40 40 H 1.08990 * 109.47588 * 60.00036 * 23 21 20 41 41 H 1.09010 * 109.47341 * 180.02562 * 23 21 20 42 42 H 1.09001 * 109.47292 * 299.99548 * 23 21 20 43 43 H 1.09003 * 109.47328 * 60.00114 * 24 21 20 44 44 H 1.09010 * 109.46538 * 179.97438 * 24 21 20 45 45 H 1.08990 * 109.47177 * 299.99183 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1894 1.4422 1.1836 6 1 5.1106 0.8859 1.2748 7 6 3.6990 2.1582 2.2702 8 7 4.1494 1.9082 3.4787 9 14 2.4000 3.4753 2.0113 10 1 1.0509 2.8828 2.1950 11 1 2.5995 4.5678 2.9973 12 1 2.5172 4.0226 0.6358 13 6 4.1784 1.4426 -1.1681 14 8 3.5737 1.3331 -2.2201 15 6 5.5861 1.5699 -1.1720 16 6 6.2518 1.7075 -2.3467 17 6 5.5339 1.9508 -3.5432 18 6 5.7644 1.3617 -4.7601 19 7 4.9573 1.7700 -5.7070 20 6 4.0594 2.6455 -5.3901 21 6 3.0482 3.2216 -6.3475 22 6 2.1791 2.0951 -6.9102 23 6 2.1635 4.2286 -5.6100 24 6 3.7757 3.9260 -7.4946 25 16 4.1829 3.0652 -3.7379 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 3.8071 2.4074 4.2366 34 1 6.1320 1.5576 -0.2402 35 1 7.3289 1.6314 -2.3691 36 1 6.5434 0.6317 -4.9236 37 1 1.6609 1.5933 -6.0930 38 1 1.4481 2.5118 -7.6031 39 1 2.8095 1.3778 -7.4356 40 1 2.7826 5.0311 -5.2092 41 1 1.4318 4.6450 -6.3025 42 1 1.6452 3.7268 -4.7929 43 1 4.4060 3.2086 -8.0201 44 1 3.0443 4.3424 -8.1874 45 1 4.3948 4.7285 -7.0938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491929312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:07 Heat of formation + Delta-G solvation = 18.536357 kcal Electronic energy + Delta-G solvation = -25783.841849 eV Core-core repulsion = 22314.596834 eV Total energy + Delta-G solvation = -3469.245015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09645 -40.48687 -37.90180 -37.18753 -35.00078 -34.42246 -33.56928 -30.01593 -28.32941 -28.15164 -27.83029 -27.07866 -26.04819 -23.57229 -22.55495 -21.95714 -20.85058 -19.83802 -18.78233 -18.24467 -17.82663 -17.29094 -16.70504 -15.97887 -15.84226 -15.69350 -15.44392 -15.21321 -14.91698 -14.71905 -14.57430 -14.34282 -14.19194 -14.04276 -13.50192 -13.36149 -13.22418 -13.11713 -13.00185 -12.63295 -12.62328 -12.51546 -12.45388 -12.22113 -12.20255 -11.96809 -11.90989 -11.87233 -11.56978 -11.18633 -10.94440 -10.45350 -10.29575 -9.95617 -9.11007 -8.90292 -8.55236 -6.13293 -0.67362 0.61099 0.92146 1.13578 1.19576 1.30458 1.37434 2.03938 2.12077 2.50737 2.72066 3.06197 3.23813 3.86090 3.89785 3.98749 4.09485 4.11338 4.21742 4.30753 4.33397 4.45675 4.48956 4.53388 4.62173 4.69403 4.73097 4.84162 4.84588 4.89269 4.95423 4.96934 5.03912 5.06309 5.15759 5.18215 5.25519 5.29231 5.33612 5.37632 5.40080 5.47703 5.59959 6.00282 6.23515 6.90931 6.97702 7.38890 7.77830 8.58131 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.004406 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.992472 B = 6353.683370 C = 6893.908400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.096 3.904 4 N -0.461 5.461 5 C -0.336 4.336 6 H 0.086 0.914 7 C 0.029 3.971 8 N -0.895 5.895 9 Si 0.931 3.069 10 H -0.256 1.256 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.483 3.517 14 O -0.595 6.595 15 C -0.194 4.194 16 C -0.010 4.010 17 C -0.228 4.228 18 C 0.044 3.956 19 N -0.499 5.499 20 C 0.010 3.990 21 C 0.009 3.991 22 C -0.127 4.127 23 C -0.152 4.152 24 C -0.125 4.125 25 S 0.226 5.774 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.281 0.719 34 H 0.137 0.863 35 H 0.173 0.827 36 H 0.189 0.811 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 4.416 -15.388 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.026 4.026 4 N -0.179 5.179 5 C -0.464 4.464 6 H 0.104 0.896 7 C -0.176 4.176 8 N -0.532 5.532 9 Si 0.758 3.242 10 H -0.182 1.182 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.278 3.722 14 O -0.485 6.485 15 C -0.218 4.218 16 C -0.032 4.032 17 C -0.350 4.350 18 C -0.113 4.113 19 N -0.213 5.213 20 C -0.263 4.263 21 C 0.005 3.995 22 C -0.186 4.186 23 C -0.210 4.210 24 C -0.184 4.184 25 S 0.490 5.510 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.206 0.794 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.025 4.965 -15.535 16.798 hybrid contribution 0.555 -0.570 0.901 1.202 sum -3.470 4.395 -14.634 15.669 Atomic orbital electron populations 1.21681 0.93308 1.02843 1.02055 1.21663 0.97408 0.95923 1.01187 1.21808 0.82043 0.98273 1.00490 1.43897 1.04818 1.63552 1.05649 1.18989 1.09441 1.30520 0.87481 0.89649 1.25892 0.99226 0.98007 0.94447 1.69749 1.44245 1.40001 0.99155 0.86092 0.80040 0.79677 0.78437 1.18201 1.21283 1.19198 1.17572 0.89626 0.81955 0.83069 1.90786 1.71834 1.55553 1.30284 1.22378 0.94471 1.05270 0.99690 1.20787 1.00237 0.93906 0.88297 1.23936 1.04234 1.07324 0.99505 1.22568 1.00707 1.01722 0.86290 1.65800 1.06017 1.13870 1.35657 1.27721 1.00448 1.00734 0.97361 1.19339 0.91441 0.95741 0.92980 1.21782 0.99059 0.97163 1.00592 1.22025 1.00019 0.98177 1.00818 1.21777 1.00529 0.99683 0.96373 1.83697 1.27916 1.35015 1.04402 0.90837 0.92619 0.91946 0.93003 0.92904 0.92550 0.91159 0.90896 0.84548 0.80999 0.79374 0.94264 0.89168 0.92800 0.92083 0.88198 0.93314 0.92681 0.89326 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.91 71.98 0.71 -3.51 16 2 C -0.12 -4.77 6.26 30.59 0.19 -4.57 16 3 C 0.10 4.17 4.09 86.38 0.35 4.53 16 4 N -0.46 -21.90 2.22 -645.85 -1.44 -23.34 16 5 C -0.34 -17.34 8.87 84.12 0.75 -16.59 16 6 H 0.09 4.68 7.01 -2.91 -0.02 4.66 16 7 C 0.03 1.50 5.40 84.96 0.46 1.95 16 8 N -0.89 -48.67 13.95 21.68 0.30 -48.37 16 9 Si 0.93 41.15 24.71 68.60 1.70 42.85 16 10 H -0.26 -10.54 6.68 99.48 0.66 -9.87 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.93 7.06 99.48 0.70 -11.23 16 13 C 0.48 21.99 6.92 85.00 0.59 22.58 16 14 O -0.60 -27.54 11.16 -4.80 -0.05 -27.60 16 15 C -0.19 -7.73 9.15 22.45 0.21 -7.53 16 16 C -0.01 -0.32 9.93 22.53 0.22 -0.10 16 17 C -0.23 -7.98 4.72 22.85 0.11 -7.87 16 18 C 0.04 1.44 11.39 84.57 0.96 2.40 16 19 N -0.50 -16.75 10.47 -189.24 -1.98 -18.73 16 20 C 0.01 0.32 5.77 88.47 0.51 0.83 16 21 C 0.01 0.21 0.99 -52.93 -0.05 0.16 16 22 C -0.13 -2.89 8.45 71.98 0.61 -2.28 16 23 C -0.15 -3.22 7.53 71.98 0.54 -2.68 16 24 C -0.12 -2.44 8.45 71.98 0.61 -1.83 16 25 S 0.23 7.97 17.71 -56.49 -1.00 6.97 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.47 2.62 -2.38 -0.01 2.47 16 32 H 0.07 2.99 7.51 -2.39 -0.02 2.97 16 33 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.14 5.45 6.45 -2.91 -0.02 5.43 16 35 H 0.17 4.18 8.06 -2.91 -0.02 4.15 16 36 H 0.19 5.00 8.06 -2.91 -0.02 4.98 16 37 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.27 7.91 -2.39 -0.02 1.26 16 41 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.05 1.19 7.91 -2.39 -0.02 1.17 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -62.15 370.44 5.22 -56.93 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.92 Total: 25.80 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 6.77 Total: -14.51 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -3.11 Total: -90.44 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.70 Total: 42.85 kcal Atomic # 16 Polarization: 7.97 SS G_CDS: -1.00 Total: 6.97 kcal Total: -62.15 5.22 -56.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491929312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.467 kcal (2) G-P(sol) polarization free energy of solvation -62.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds