Wall clock time and date at job start Tue Mar 31 2020 13:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46916 * 2 1 4 4 H 1.08995 * 109.47084 * 304.67557 * 3 2 1 5 5 C 1.50698 * 109.46890 * 184.67762 * 3 2 1 6 6 H 1.08000 * 120.00420 * 274.66742 * 5 3 2 7 7 C 1.37881 * 119.99930 * 94.66625 * 5 3 2 8 8 N 1.31517 * 120.00009 * 184.40553 * 7 5 3 9 9 Si 1.86799 * 119.99989 * 4.41095 * 7 5 3 10 10 H 1.48503 * 109.46879 * 94.29512 * 9 7 5 11 11 H 1.48500 * 109.47241 * 214.29654 * 9 7 5 12 12 H 1.48504 * 109.46708 * 334.29636 * 9 7 5 13 13 N 1.46496 * 109.47167 * 64.68140 * 3 2 1 14 14 C 1.34776 * 120.00179 * 274.99803 * 13 3 2 15 15 O 1.21784 * 119.99833 * 359.97438 * 14 13 3 16 16 C 1.41544 * 120.00397 * 179.97438 * 14 13 3 17 17 C 1.35567 * 119.99944 * 173.74018 * 16 14 13 18 18 C 1.41723 * 120.00311 * 345.88422 * 17 16 14 19 19 C 1.37066 * 126.19373 * 137.97097 * 18 17 16 20 20 N 1.30957 * 113.84776 * 179.85067 * 19 18 17 21 21 C 1.29361 * 117.48997 * 0.45509 * 20 19 18 22 22 C 1.50696 * 124.67116 * 179.74662 * 21 20 19 23 23 C 1.53001 * 109.47513 * 59.99881 * 22 21 20 24 24 C 1.53001 * 109.47185 * 180.02562 * 22 21 20 25 25 C 1.53012 * 109.47254 * 299.99764 * 22 21 20 26 26 S 1.70913 * 110.65291 * 359.74691 * 21 20 19 27 27 H 1.09002 * 109.46751 * 300.00335 * 1 2 3 28 28 H 1.08994 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47035 * 59.99915 * 1 2 3 30 30 H 1.09002 * 109.47290 * 119.99616 * 2 1 3 31 31 H 1.08998 * 109.47032 * 240.00086 * 2 1 3 32 32 H 0.96993 * 119.99811 * 180.02562 * 8 7 5 33 33 H 0.97007 * 120.00277 * 94.99920 * 13 3 2 34 34 H 1.07998 * 120.00059 * 353.74641 * 16 14 13 35 35 H 1.07999 * 119.99804 * 165.87241 * 17 16 14 36 36 H 1.07997 * 123.07311 * 0.02562 * 19 18 17 37 37 H 1.09001 * 109.46746 * 59.99807 * 23 22 21 38 38 H 1.08996 * 109.47173 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.46686 * 299.99956 * 23 22 21 40 40 H 1.09003 * 109.47014 * 59.99929 * 24 22 21 41 41 H 1.08997 * 109.47374 * 180.02562 * 24 22 21 42 42 H 1.09001 * 109.46898 * 300.00084 * 24 22 21 43 43 H 1.09003 * 109.46494 * 60.00005 * 25 22 21 44 44 H 1.08997 * 109.47147 * 180.02562 * 25 22 21 45 45 H 1.08994 * 109.46868 * 300.00607 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6099 1.9800 -0.8451 5 6 3.5425 1.4441 -0.1159 6 1 4.1526 1.3433 0.7696 7 6 4.1385 1.5743 -1.3524 8 7 5.4461 1.4889 -1.4644 9 14 3.0886 1.8721 -2.8685 10 1 3.0038 3.3309 -3.1330 11 1 3.7025 1.1920 -4.0371 12 1 1.7249 1.3302 -2.6404 13 7 1.6459 2.0998 1.2485 14 6 0.4280 2.6669 1.3562 15 8 -0.3447 2.6334 0.4155 16 6 0.0469 3.3015 2.5627 17 6 -1.1242 3.9810 2.6306 18 6 -1.8201 4.3143 1.4419 19 6 -3.1738 4.2280 1.2452 20 7 -3.5603 4.6018 0.0511 21 6 -2.6461 4.9875 -0.7789 22 6 -2.9078 5.4445 -2.1908 23 6 -3.8316 6.6640 -2.1694 24 6 -1.5835 5.8190 -2.8594 25 6 -3.5738 4.3139 -2.9777 26 16 -1.1006 4.9075 -0.0534 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 5.8653 1.5808 -2.3343 33 1 2.2615 2.1269 1.9977 34 1 0.6892 3.2445 3.4291 35 1 -1.5269 4.2682 3.5907 36 1 -3.8593 3.8858 2.0064 37 1 -3.3570 7.4694 -1.6088 38 1 -4.0212 6.9942 -3.1907 39 1 -4.7750 6.3967 -1.6933 40 1 -0.9257 4.9500 -2.8747 41 1 -1.7727 6.1500 -3.8805 42 1 -1.1085 6.6243 -2.2989 43 1 -4.5173 4.0467 -2.5015 44 1 -3.7627 4.6443 -3.9991 45 1 -2.9157 3.4452 -2.9930 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492581909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:30 Heat of formation + Delta-G solvation = 16.439471 kcal Electronic energy + Delta-G solvation = -25865.842842 eV Core-core repulsion = 22396.506900 eV Total energy + Delta-G solvation = -3469.335943 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.76128 -39.29213 -36.75373 -35.45315 -33.54915 -32.38766 -31.49384 -28.84930 -27.52374 -27.42207 -27.30024 -25.41496 -23.26044 -22.36483 -21.00462 -19.97200 -19.59821 -18.69502 -17.46936 -16.96767 -16.31295 -15.66113 -15.17840 -14.85700 -14.63378 -14.30487 -14.13310 -13.80854 -13.78107 -13.38310 -13.16122 -12.79942 -12.61949 -12.40039 -12.26028 -12.17104 -11.90930 -11.85357 -11.73275 -11.48817 -11.21910 -11.06978 -10.98661 -10.97487 -10.68464 -10.66102 -10.08799 -9.96354 -9.83915 -9.27289 -9.22018 -9.11559 -8.74956 -8.50988 -7.90818 -7.64315 -6.25708 -4.29004 0.37759 1.65708 1.96637 2.24835 3.14370 3.21737 3.31087 3.38722 3.92993 4.18494 4.21315 4.29959 4.74871 4.86789 4.99855 5.10300 5.12250 5.30619 5.38275 5.48662 5.56617 5.59743 5.67278 5.68223 5.80798 5.83350 5.90974 6.01395 6.06324 6.09649 6.18820 6.22901 6.25643 6.26657 6.33037 6.53327 6.67737 6.79803 6.98354 7.02468 7.29682 7.36963 7.57426 8.05711 8.13529 8.57816 8.75605 8.99719 9.36875 10.86153 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.004998 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.655682 B = 5600.506632 C = 6763.014735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.235 3.765 4 H 0.055 0.945 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.867 3.133 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.255 1.255 13 N -0.693 5.693 14 C 0.516 3.484 15 O -0.544 6.544 16 C -0.205 4.205 17 C 0.000 4.000 18 C -0.224 4.224 19 C 0.059 3.941 20 N -0.482 5.482 21 C 0.016 3.984 22 C 0.013 3.987 23 C -0.131 4.131 24 C -0.158 4.158 25 C -0.133 4.133 26 S 0.259 5.741 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.267 0.733 33 H 0.392 0.608 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.168 0.832 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 8.797 3.624 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.132 3.868 4 H 0.072 0.928 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.525 5.525 9 Si 0.694 3.306 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.179 1.179 13 N -0.340 5.340 14 C 0.305 3.695 15 O -0.427 6.427 16 C -0.230 4.230 17 C -0.022 4.022 18 C -0.347 4.347 19 C -0.099 4.099 20 N -0.197 5.197 21 C -0.256 4.256 22 C 0.009 3.991 23 C -0.189 4.189 24 C -0.216 4.216 25 C -0.191 4.191 26 S 0.522 5.478 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.185 0.815 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.961 9.022 2.199 17.609 hybrid contribution -0.538 -0.479 0.472 0.861 sum -15.498 8.543 2.671 17.898 Atomic orbital electron populations 1.21878 0.97338 0.98626 1.02050 1.22056 0.93673 0.99517 1.01006 1.19218 0.95180 0.89032 0.83332 0.92769 1.21032 0.88709 1.51772 0.95346 0.90444 1.24924 0.94788 0.93707 0.98797 1.69886 1.09120 1.48560 1.24979 0.86964 0.81739 0.79203 0.82720 1.19954 1.21084 1.17871 1.46629 1.14454 1.54893 1.18060 1.17217 0.83095 0.81079 0.88102 1.90893 1.51424 1.59801 1.40555 1.22449 0.98603 1.01946 0.99964 1.20427 0.92707 0.93817 0.95297 1.23752 0.97452 1.13184 1.00270 1.22175 0.92037 1.01536 0.94157 1.65765 1.36428 1.14891 1.02587 1.27137 0.93408 1.04465 1.00609 1.19137 0.96664 0.96360 0.86950 1.21809 0.99405 0.95911 1.01821 1.22055 0.95840 1.02440 1.01244 1.21818 1.01097 0.97300 0.98935 1.83857 1.08824 1.51233 1.03844 0.93105 0.95396 0.93177 0.93162 0.92360 0.92290 0.77483 0.85112 0.84513 0.81531 0.92745 0.91990 0.91646 0.91485 0.90862 0.92006 0.91688 0.92049 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.12 -2.66 5.59 -26.73 -0.15 -2.81 16 3 C 0.24 5.39 1.86 -69.08 -0.13 5.26 16 4 H 0.05 1.36 4.55 -51.93 -0.24 1.12 16 5 C -0.53 -13.96 9.05 -34.44 -0.31 -14.27 16 6 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 9 Si 0.87 21.06 27.28 -169.99 -4.64 16.42 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.25 -6.10 6.42 56.52 0.36 -5.74 16 13 N -0.69 -13.39 5.01 -57.85 -0.29 -13.68 16 14 C 0.52 9.33 5.60 -15.00 -0.08 9.25 16 15 O -0.54 -11.04 8.95 5.11 0.05 -10.99 16 16 C -0.21 -2.84 9.80 -39.28 -0.38 -3.23 16 17 C 0.00 0.00 9.91 -39.21 -0.39 -0.39 16 18 C -0.22 -3.34 4.67 -38.68 -0.18 -3.52 16 19 C 0.06 0.86 11.38 -18.35 -0.21 0.65 16 20 N -0.48 -7.56 10.48 -11.18 -0.12 -7.68 16 21 C 0.02 0.25 5.77 -13.32 -0.08 0.17 16 22 C 0.01 0.16 0.99 -155.65 -0.15 0.00 16 23 C -0.13 -1.37 8.45 37.16 0.31 -1.05 16 24 C -0.16 -1.87 7.53 37.16 0.28 -1.59 16 25 C -0.13 -1.62 8.45 37.16 0.31 -1.31 16 26 S 0.26 4.14 17.91 -107.50 -1.93 2.21 16 27 H 0.05 1.02 5.65 -51.93 -0.29 0.72 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.07 7.82 -51.93 -0.41 0.67 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.39 6.75 8.55 -40.82 -0.35 6.40 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.91 7.91 -51.93 -0.41 0.50 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -31.02 371.59 -8.69 -39.71 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.20 Total: 6.71 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -0.94 Total: -13.20 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.37 Total: -46.47 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.05 Total: -10.99 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.64 Total: 16.42 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.93 Total: 2.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.02 -8.69 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492581909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.154 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds