Wall clock time and date at job start Tue Mar 31 2020 13:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 H 1.09006 * 109.46856 * 54.99725 * 3 2 1 5 5 C 1.50701 * 109.46987 * 174.99969 * 3 2 1 6 6 H 1.08002 * 119.99685 * 120.00260 * 5 3 2 7 7 C 1.37877 * 119.99673 * 299.99889 * 5 3 2 8 8 N 1.31512 * 119.99423 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00567 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46808 * 89.99712 * 9 7 5 11 11 H 1.48492 * 109.47376 * 209.99809 * 9 7 5 12 12 H 1.48500 * 109.46939 * 330.00369 * 9 7 5 13 13 N 1.46498 * 109.47244 * 295.00284 * 3 2 1 14 14 C 1.34774 * 120.00498 * 84.99637 * 13 3 2 15 15 O 1.21781 * 119.99584 * 0.02562 * 14 13 3 16 16 C 1.41545 * 120.00197 * 179.97438 * 14 13 3 17 17 C 1.35564 * 119.99931 * 187.20869 * 16 14 13 18 18 C 1.41719 * 119.99846 * 10.57235 * 17 16 14 19 19 C 1.37067 * 126.19507 * 224.21061 * 18 17 16 20 20 N 1.30958 * 113.85515 * 180.02562 * 19 18 17 21 21 C 1.29360 * 117.48435 * 359.97438 * 20 19 18 22 22 C 1.50710 * 124.66965 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.46666 * 60.03030 * 22 21 20 24 24 C 1.52997 * 109.47200 * 300.03148 * 22 21 20 25 25 C 1.52997 * 109.46847 * 180.02562 * 22 21 20 26 26 S 1.70910 * 110.65692 * 0.24944 * 21 20 19 27 27 H 1.08999 * 109.47524 * 59.99947 * 1 2 3 28 28 H 1.08999 * 109.47669 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47610 * 299.99891 * 1 2 3 30 30 H 1.09002 * 109.46747 * 240.00030 * 2 1 3 31 31 H 1.09003 * 109.46840 * 120.00251 * 2 1 3 32 32 H 0.97008 * 120.00008 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99571 * 265.00578 * 13 3 2 34 34 H 1.07999 * 120.00214 * 7.20876 * 16 14 13 35 35 H 1.08001 * 119.99727 * 190.57975 * 17 16 14 36 36 H 1.08008 * 123.07227 * 0.02562 * 19 18 17 37 37 H 1.09006 * 109.47367 * 299.99363 * 23 22 21 38 38 H 1.08998 * 109.46866 * 180.02562 * 23 22 21 39 39 H 1.08994 * 109.47455 * 59.99945 * 23 22 21 40 40 H 1.09002 * 109.47272 * 180.02562 * 24 22 21 41 41 H 1.09004 * 109.46829 * 299.99541 * 24 22 21 42 42 H 1.08998 * 109.47677 * 59.99565 * 24 22 21 43 43 H 1.08994 * 109.47269 * 300.00052 * 25 22 21 44 44 H 1.09004 * 109.47463 * 60.00287 * 25 22 21 45 45 H 1.08998 * 109.46677 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4538 0.8803 1.3363 9 14 3.0962 0.1101 2.5708 10 1 2.8743 -1.3260 2.2646 11 1 3.7940 0.2359 3.8755 12 1 1.7880 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3425 2.6325 -0.4303 16 6 0.0609 3.2977 -2.5762 17 6 -1.1007 3.9932 -2.6459 18 6 -1.8283 4.2776 -1.4635 19 6 -3.1837 4.1576 -1.2985 20 7 -3.6028 4.4863 -0.1022 21 6 -2.7154 4.8727 0.7560 22 6 -3.0168 5.2874 2.1733 23 6 -3.6700 4.1212 2.9177 24 6 -3.9703 6.4838 2.1628 25 6 -1.7161 5.6778 2.8780 26 16 -1.1550 4.8556 0.0590 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8769 0.4825 2.1133 33 1 2.2719 2.1231 -1.9978 34 1 0.7007 3.2269 -3.4434 35 1 -1.4716 4.3305 -3.6025 36 1 -3.8456 3.8227 -2.0836 37 1 -4.5967 3.8430 2.4157 38 1 -3.8884 4.4211 3.9426 39 1 -2.9908 3.2688 2.9252 40 1 -4.1880 6.7840 3.1878 41 1 -3.5049 7.3146 1.6324 42 1 -4.8969 6.2057 1.6607 43 1 -1.0369 4.8253 2.8854 44 1 -1.2507 6.5085 2.3476 45 1 -1.9341 5.9772 3.9031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492581910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:35 Heat of formation + Delta-G solvation = 24.342823 kcal Electronic energy + Delta-G solvation = -25806.255911 eV Core-core repulsion = 22337.262684 eV Total energy + Delta-G solvation = -3468.993228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79897 -39.31874 -36.76597 -35.58271 -33.58557 -32.42630 -31.55186 -28.86587 -27.51857 -27.41814 -27.30015 -25.43138 -23.26452 -22.35717 -21.01218 -20.21229 -19.65678 -18.72858 -17.44223 -16.91810 -16.24005 -15.76016 -15.22615 -14.88869 -14.74000 -14.33609 -14.14202 -13.86680 -13.75623 -13.42545 -13.16834 -13.02226 -12.58987 -12.42446 -12.25838 -12.17499 -11.94042 -11.78717 -11.73125 -11.49873 -11.23472 -11.09199 -11.06718 -10.97582 -10.89959 -10.63728 -10.06235 -9.95068 -9.56663 -9.29671 -9.23956 -9.11980 -8.80382 -8.50428 -7.94819 -7.66663 -6.22888 -4.25174 0.38808 1.63759 1.96564 2.24584 3.13518 3.21713 3.33494 3.38217 3.88489 4.16033 4.19151 4.29738 4.75140 4.86974 4.99559 5.09474 5.11077 5.25670 5.38049 5.48544 5.56530 5.59047 5.63608 5.68242 5.80942 5.83505 5.91021 5.97597 6.01355 6.03004 6.16127 6.19772 6.22926 6.26316 6.29881 6.52794 6.67010 6.71098 6.85173 6.97747 7.28092 7.30438 7.51232 8.06214 8.15084 8.52901 8.74607 8.94501 9.38394 10.89241 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.004544 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.491072 B = 6160.620181 C = 7171.014063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.692 5.692 14 C 0.519 3.481 15 O -0.540 6.540 16 C -0.204 4.204 17 C 0.001 3.999 18 C -0.228 4.228 19 C 0.058 3.942 20 N -0.483 5.483 21 C 0.015 3.985 22 C 0.013 3.987 23 C -0.133 4.133 24 C -0.131 4.131 25 C -0.157 4.157 26 S 0.265 5.735 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.167 0.833 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.482 9.516 -3.713 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.338 5.338 14 C 0.307 3.693 15 O -0.423 6.423 16 C -0.228 4.228 17 C -0.021 4.021 18 C -0.350 4.350 19 C -0.099 4.099 20 N -0.197 5.197 21 C -0.257 4.257 22 C 0.009 3.991 23 C -0.191 4.191 24 C -0.190 4.190 25 C -0.215 4.215 26 S 0.529 5.471 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.184 0.816 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.339 9.702 -2.298 18.294 hybrid contribution -0.517 -1.170 -0.599 1.413 sum -15.856 8.531 -2.897 18.237 Atomic orbital electron populations 1.21852 0.96858 0.98838 1.02283 1.22270 0.94363 0.99966 1.00946 1.19120 0.95486 0.88462 0.82987 0.93278 1.21065 0.88699 1.39743 1.07800 0.90255 1.24822 0.94824 0.95125 0.97650 1.69869 1.08688 1.44547 1.29817 0.86919 0.80967 0.79996 0.80941 1.20310 1.22185 1.18463 1.46215 1.14723 1.55062 1.17819 1.17184 0.82979 0.80936 0.88181 1.90905 1.51018 1.59303 1.41027 1.22412 0.98835 1.01838 0.99708 1.20434 0.92438 0.93925 0.95340 1.23763 0.97580 1.13526 1.00125 1.22158 0.91580 1.01844 0.94365 1.65764 1.36904 1.15260 1.01798 1.27143 0.93634 1.04555 1.00407 1.19131 0.96598 0.96510 0.86841 1.21813 1.01134 0.96990 0.99208 1.21812 0.99174 0.96159 1.01828 1.22046 0.96097 1.02368 1.00994 1.83789 1.08726 1.51560 1.03074 0.92794 0.95258 0.93019 0.92446 0.92929 0.92301 0.77274 0.85082 0.84489 0.81588 0.91737 0.92075 0.92299 0.92003 0.92764 0.91669 0.91382 0.92045 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.54 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.61 1.83 -69.08 -0.13 5.48 16 4 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 5 C -0.54 -14.20 9.31 -34.44 -0.32 -14.52 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 8 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 9 Si 0.88 21.62 24.41 -169.99 -4.15 17.47 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.69 -13.18 5.01 -57.85 -0.29 -13.47 16 14 C 0.52 9.18 5.67 -15.00 -0.09 9.09 16 15 O -0.54 -10.73 8.78 5.12 0.04 -10.69 16 16 C -0.20 -2.75 9.82 -39.28 -0.39 -3.13 16 17 C 0.00 0.01 9.92 -39.21 -0.39 -0.38 16 18 C -0.23 -3.32 4.65 -38.68 -0.18 -3.50 16 19 C 0.06 0.84 11.38 -18.35 -0.21 0.63 16 20 N -0.48 -7.47 10.48 -11.18 -0.12 -7.59 16 21 C 0.02 0.22 5.77 -13.31 -0.08 0.15 16 22 C 0.01 0.16 0.99 -155.66 -0.15 0.00 16 23 C -0.13 -1.60 8.45 37.16 0.31 -1.28 16 24 C -0.13 -1.34 8.45 37.16 0.31 -1.03 16 25 C -0.16 -1.78 7.53 37.16 0.28 -1.50 16 26 S 0.26 4.10 17.88 -107.50 -1.92 2.18 16 27 H 0.05 1.08 5.64 -51.93 -0.29 0.78 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.11 7.84 -51.92 -0.41 0.70 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.23 3.22 -51.93 -0.17 1.06 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.39 6.68 8.50 -40.82 -0.35 6.33 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.17 1.94 8.06 -52.48 -0.42 1.51 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.89 7.92 -51.93 -0.41 0.47 16 44 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.27 365.22 -8.15 -39.42 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.06 Total: 6.18 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.94 Total: -13.58 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.37 Total: -46.49 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.04 Total: -10.69 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.15 Total: 17.47 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.92 Total: 2.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.27 -8.15 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492581910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.767 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds