Wall clock time and date at job start Tue Mar 31 2020 13:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 H 1.09006 * 109.46856 * 54.99725 * 3 2 1 5 5 C 1.50701 * 109.46987 * 174.99969 * 3 2 1 6 6 H 1.08002 * 119.99685 * 120.00260 * 5 3 2 7 7 C 1.37877 * 119.99673 * 299.99889 * 5 3 2 8 8 N 1.31512 * 119.99423 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00567 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46808 * 89.99712 * 9 7 5 11 11 H 1.48492 * 109.47376 * 209.99809 * 9 7 5 12 12 H 1.48500 * 109.46939 * 330.00369 * 9 7 5 13 13 N 1.46498 * 109.47244 * 295.00284 * 3 2 1 14 14 C 1.34774 * 120.00498 * 84.99637 * 13 3 2 15 15 O 1.21781 * 119.99584 * 0.02562 * 14 13 3 16 16 C 1.41545 * 120.00197 * 179.97438 * 14 13 3 17 17 C 1.35564 * 119.99931 * 187.20869 * 16 14 13 18 18 C 1.41719 * 119.99846 * 10.57235 * 17 16 14 19 19 C 1.37067 * 126.19507 * 224.21061 * 18 17 16 20 20 N 1.30958 * 113.85515 * 180.02562 * 19 18 17 21 21 C 1.29360 * 117.48435 * 359.97438 * 20 19 18 22 22 C 1.50710 * 124.66965 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.46666 * 60.03030 * 22 21 20 24 24 C 1.52997 * 109.47200 * 300.03148 * 22 21 20 25 25 C 1.52997 * 109.46847 * 180.02562 * 22 21 20 26 26 S 1.70910 * 110.65692 * 0.24944 * 21 20 19 27 27 H 1.08999 * 109.47524 * 59.99947 * 1 2 3 28 28 H 1.08999 * 109.47669 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47610 * 299.99891 * 1 2 3 30 30 H 1.09002 * 109.46747 * 240.00030 * 2 1 3 31 31 H 1.09003 * 109.46840 * 120.00251 * 2 1 3 32 32 H 0.97008 * 120.00008 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99571 * 265.00578 * 13 3 2 34 34 H 1.07999 * 120.00214 * 7.20876 * 16 14 13 35 35 H 1.08001 * 119.99727 * 190.57975 * 17 16 14 36 36 H 1.08008 * 123.07227 * 0.02562 * 19 18 17 37 37 H 1.09006 * 109.47367 * 299.99363 * 23 22 21 38 38 H 1.08998 * 109.46866 * 180.02562 * 23 22 21 39 39 H 1.08994 * 109.47455 * 59.99945 * 23 22 21 40 40 H 1.09002 * 109.47272 * 180.02562 * 24 22 21 41 41 H 1.09004 * 109.46829 * 299.99541 * 24 22 21 42 42 H 1.08998 * 109.47677 * 59.99565 * 24 22 21 43 43 H 1.08994 * 109.47269 * 300.00052 * 25 22 21 44 44 H 1.09004 * 109.47463 * 60.00287 * 25 22 21 45 45 H 1.08998 * 109.46677 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4538 0.8803 1.3363 9 14 3.0962 0.1101 2.5708 10 1 2.8743 -1.3260 2.2646 11 1 3.7940 0.2359 3.8755 12 1 1.7880 0.8094 2.6395 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3425 2.6325 -0.4303 16 6 0.0609 3.2977 -2.5762 17 6 -1.1007 3.9932 -2.6459 18 6 -1.8283 4.2776 -1.4635 19 6 -3.1837 4.1576 -1.2985 20 7 -3.6028 4.4863 -0.1022 21 6 -2.7154 4.8727 0.7560 22 6 -3.0168 5.2874 2.1733 23 6 -3.6700 4.1212 2.9177 24 6 -3.9703 6.4838 2.1628 25 6 -1.7161 5.6778 2.8780 26 16 -1.1550 4.8556 0.0590 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.8769 0.4825 2.1133 33 1 2.2719 2.1231 -1.9978 34 1 0.7007 3.2269 -3.4434 35 1 -1.4716 4.3305 -3.6025 36 1 -3.8456 3.8227 -2.0836 37 1 -4.5967 3.8430 2.4157 38 1 -3.8884 4.4211 3.9426 39 1 -2.9908 3.2688 2.9252 40 1 -4.1880 6.7840 3.1878 41 1 -3.5049 7.3146 1.6324 42 1 -4.8969 6.2057 1.6607 43 1 -1.0369 4.8253 2.8854 44 1 -1.2507 6.5085 2.3476 45 1 -1.9341 5.9772 3.9031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492581910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:35 Heat of formation + Delta-G solvation = 4.337912 kcal Electronic energy + Delta-G solvation = -25807.123390 eV Core-core repulsion = 22337.262684 eV Total energy + Delta-G solvation = -3469.860706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10739 -40.51843 -37.85470 -37.14243 -34.77116 -34.37707 -33.21731 -30.15299 -29.18628 -28.36852 -28.18952 -26.59706 -24.87335 -23.91068 -22.07129 -21.76358 -21.10506 -19.95209 -18.85840 -18.28069 -17.69015 -17.47097 -16.58370 -16.28651 -15.88733 -15.70456 -15.30859 -15.07061 -15.02684 -14.85890 -14.57163 -14.25071 -14.10430 -13.72886 -13.63380 -13.57240 -13.17710 -13.06314 -12.94828 -12.77676 -12.66128 -12.49161 -12.40909 -12.25999 -12.01092 -11.92518 -11.87214 -11.40626 -11.24257 -11.18148 -10.87196 -10.54155 -10.37094 -9.93375 -9.11830 -9.01713 -8.38763 -6.43311 -0.71305 0.54066 0.85334 1.12807 1.24621 1.32539 1.42178 2.00624 2.24295 2.60351 2.73215 2.97925 3.19058 3.80865 3.94192 4.02526 4.10293 4.19004 4.23920 4.31572 4.40797 4.45151 4.51002 4.64318 4.66286 4.69049 4.80866 4.84841 4.91708 4.93356 4.98703 5.00146 5.10572 5.13114 5.18101 5.21886 5.26684 5.33158 5.37102 5.43211 5.49880 5.54313 5.72960 6.17550 6.59335 6.93121 6.98519 7.20645 7.56110 8.76608 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.004544 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.491072 B = 6160.620181 C = 7171.014063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.135 4.135 3 C 0.255 3.745 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.934 3.066 10 H -0.264 1.264 11 H -0.293 1.293 12 H -0.261 1.261 13 N -0.697 5.697 14 C 0.515 3.485 15 O -0.564 6.564 16 C -0.219 4.219 17 C 0.021 3.979 18 C -0.235 4.235 19 C 0.052 3.948 20 N -0.500 5.500 21 C 0.018 3.982 22 C 0.007 3.993 23 C -0.128 4.128 24 C -0.124 4.124 25 C -0.154 4.154 26 S 0.216 5.784 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.269 0.731 33 H 0.403 0.597 34 H 0.165 0.835 35 H 0.185 0.815 36 H 0.194 0.806 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.034 0.966 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 9.886 -4.570 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 C 0.149 3.851 4 H 0.040 0.960 5 C -0.569 4.569 6 H 0.074 0.926 7 C -0.168 4.168 8 N -0.573 5.573 9 Si 0.762 3.238 10 H -0.190 1.190 11 H -0.220 1.220 12 H -0.186 1.186 13 N -0.345 5.345 14 C 0.306 3.694 15 O -0.447 6.447 16 C -0.243 4.243 17 C 0.000 4.000 18 C -0.357 4.357 19 C -0.105 4.105 20 N -0.214 5.214 21 C -0.254 4.254 22 C 0.003 3.997 23 C -0.187 4.187 24 C -0.183 4.183 25 C -0.212 4.212 26 S 0.479 5.521 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.183 0.817 35 H 0.202 0.798 36 H 0.211 0.789 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.585 10.078 -3.190 20.518 hybrid contribution 0.104 -1.197 -0.357 1.253 sum -17.481 8.881 -3.547 19.926 Atomic orbital electron populations 1.21699 0.95271 0.99997 1.01488 1.22184 0.95664 0.98815 1.00652 1.18673 0.92859 0.89348 0.84200 0.95968 1.21326 0.90568 1.38270 1.06782 0.92619 1.25498 0.95617 0.95905 0.99751 1.69976 1.10217 1.46291 1.30829 0.86076 0.79377 0.79819 0.78569 1.18974 1.22048 1.18553 1.46044 1.15894 1.55855 1.16746 1.17845 0.81926 0.80287 0.89312 1.90914 1.51530 1.59962 1.42336 1.22424 1.00163 1.02937 0.98805 1.20936 0.91046 0.91858 0.96198 1.24046 0.97781 1.13816 1.00107 1.22644 0.91988 1.01208 0.94649 1.65820 1.37201 1.15932 1.02487 1.27610 0.92788 1.03698 1.01336 1.19335 0.97461 0.97363 0.85517 1.21785 1.00029 0.96161 1.00727 1.21766 0.98062 0.95085 1.03341 1.22037 0.95253 1.01467 1.02447 1.83967 1.10342 1.52874 1.04904 0.92536 0.93029 0.94817 0.91623 0.94217 0.92145 0.76159 0.81704 0.79806 0.78926 0.92449 0.89419 0.94630 0.89583 0.92606 0.92437 0.93783 0.91720 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.51 71.98 0.61 -4.39 16 2 C -0.13 -5.84 5.11 30.59 0.16 -5.68 16 3 C 0.25 11.82 1.83 44.24 0.08 11.90 16 4 H 0.02 1.17 6.63 -2.38 -0.02 1.15 16 5 C -0.53 -28.77 9.31 25.60 0.24 -28.53 16 6 H 0.06 3.21 7.98 -2.91 -0.02 3.19 16 7 C 0.03 1.80 5.45 84.66 0.46 2.26 16 8 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 9 Si 0.93 45.11 24.41 68.60 1.67 46.78 16 10 H -0.26 -12.12 6.83 99.48 0.68 -11.45 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.26 -12.52 6.53 99.48 0.65 -11.87 16 13 N -0.70 -26.34 5.01 -455.13 -2.28 -28.62 16 14 C 0.52 17.76 5.67 85.06 0.48 18.24 16 15 O -0.56 -22.29 8.78 -4.61 -0.04 -22.33 16 16 C -0.22 -5.35 9.82 22.47 0.22 -5.13 16 17 C 0.02 0.46 9.92 22.51 0.22 0.68 16 18 C -0.24 -6.45 4.65 22.85 0.11 -6.35 16 19 C 0.05 1.40 11.38 84.55 0.96 2.36 16 20 N -0.50 -14.97 10.48 -189.28 -1.98 -16.95 16 21 C 0.02 0.53 5.77 88.48 0.51 1.05 16 22 C 0.01 0.16 0.99 -52.93 -0.05 0.11 16 23 C -0.13 -2.99 8.45 71.98 0.61 -2.38 16 24 C -0.12 -2.31 8.45 71.98 0.61 -1.70 16 25 C -0.15 -3.40 7.53 71.98 0.54 -2.86 16 26 S 0.22 6.68 17.88 -56.49 -1.01 5.67 16 27 H 0.06 2.18 5.64 -2.39 -0.01 2.16 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.03 1.42 7.84 -2.38 -0.02 1.40 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.04 1.82 3.22 -2.39 -0.01 1.81 16 32 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 33 H 0.40 13.49 8.50 -92.70 -0.79 12.70 16 34 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.19 3.92 8.06 -2.91 -0.02 3.90 16 37 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 1.17 7.92 -2.39 -0.02 1.16 16 44 H 0.06 1.36 7.91 -2.39 -0.02 1.34 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -69.30 365.22 2.54 -66.76 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.12 Total: 24.83 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 5.76 Total: -20.42 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -3.96 Total: -101.30 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.01 Total: 5.67 kcal Total: -69.30 2.54 -66.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492581910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.099 kcal (2) G-P(sol) polarization free energy of solvation -69.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds