Wall clock time and date at job start Tue Mar 31 2020 13:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99833 * 2 1 4 4 N 1.46506 * 109.47289 * 124.99944 * 3 2 1 5 5 C 1.46493 * 119.99811 * 89.99713 * 4 3 2 6 6 C 1.50706 * 109.47492 * 90.00399 * 5 4 3 7 7 H 1.08004 * 119.99292 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00653 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99582 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00141 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47121 * 90.00123 * 10 8 6 12 12 H 1.48507 * 109.47183 * 210.00184 * 10 8 6 13 13 H 1.48498 * 109.47234 * 330.00117 * 10 8 6 14 14 C 1.34778 * 120.00058 * 270.00143 * 4 3 2 15 15 O 1.21673 * 120.00010 * 179.97438 * 14 4 3 16 16 C 1.46597 * 119.99805 * 359.97438 * 14 4 3 17 17 C 1.34856 * 119.99725 * 180.02562 * 16 14 4 18 18 C 1.47040 * 119.99956 * 179.97438 * 17 16 14 19 19 C 1.39491 * 121.43364 * 359.71826 * 18 17 16 20 20 C 1.38952 * 119.43919 * 179.72962 * 19 18 17 21 21 N 1.30939 * 122.60951 * 0.59095 * 20 19 18 22 22 C 1.33533 * 122.46660 * 359.68921 * 21 20 19 23 23 C 1.40652 * 121.18158 * 180.02562 * 22 21 20 24 24 C 1.36114 * 119.71122 * 180.02562 * 23 22 21 25 25 C 1.39304 * 121.09420 * 359.96085 * 24 23 22 26 26 C 1.36355 * 120.80418 * 359.97438 * 25 24 23 27 27 C 1.39855 * 119.56884 * 0.02562 * 26 25 24 28 28 H 1.08001 * 119.99780 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99868 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00222 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47438 * 4.99726 * 3 2 1 32 32 H 1.09004 * 109.47113 * 244.99981 * 3 2 1 33 33 H 1.09006 * 109.47571 * 210.00074 * 5 4 3 34 34 H 1.09005 * 109.47727 * 330.00531 * 5 4 3 35 35 H 0.97002 * 119.99852 * 179.97438 * 9 8 6 36 36 H 1.08001 * 120.00274 * 359.97438 * 16 14 4 37 37 H 1.08002 * 120.00462 * 359.97438 * 17 16 14 38 38 H 1.07996 * 120.27791 * 0.02562 * 19 18 17 39 39 H 1.07997 * 118.69612 * 180.28025 * 20 19 18 40 40 H 1.08006 * 120.14771 * 359.97438 * 23 22 21 41 41 H 1.08006 * 119.44991 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.59368 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.21779 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 4.3589 0.8258 0.9695 6 6 5.2616 1.9481 0.5259 7 1 4.8587 2.9395 0.3798 8 6 6.6019 1.7096 0.3077 9 7 7.0925 0.5026 0.4862 10 14 7.7205 3.1006 -0.2427 11 1 8.2899 3.7791 0.9493 12 1 8.8224 2.5509 -1.0728 13 1 6.9387 4.0778 -1.0421 14 6 2.5936 1.8224 2.3214 15 8 3.3661 1.8443 3.2612 16 6 1.2277 2.3294 2.4833 17 6 0.8275 2.8205 3.6738 18 6 -0.5424 3.3296 3.8361 19 6 -1.4507 3.3242 2.7775 20 6 -2.7368 3.8102 2.9786 21 7 -3.1380 4.2900 4.1289 22 6 -2.3424 4.3435 5.2000 23 6 -2.8018 4.8642 6.4231 24 6 -1.9650 4.9048 7.4959 25 6 -0.6558 4.4375 7.4052 26 6 -0.1767 3.9249 6.2360 27 6 -1.0103 3.8685 5.1144 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4027 -0.9314 33 1 4.7141 0.4279 1.9201 34 1 4.3667 0.0352 0.2190 35 1 8.0355 0.3347 0.3323 36 1 0.5421 2.3104 1.6490 37 1 1.5131 2.8400 4.5081 38 1 -1.1582 2.9410 1.8110 39 1 -3.4316 3.7961 2.1519 40 1 -3.8139 5.2309 6.5106 41 1 -2.3220 5.3059 8.4330 42 1 -0.0127 4.4810 8.2718 43 1 0.8397 3.5649 6.1764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492879352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:56 Heat of formation + Delta-G solvation = 62.153941 kcal Electronic energy + Delta-G solvation = -25457.984757 eV Core-core repulsion = 21855.187191 eV Total energy + Delta-G solvation = -3602.797566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.81073 -39.22720 -37.28164 -35.86969 -35.11181 -33.32900 -32.12008 -31.61632 -30.76710 -29.72479 -27.70658 -25.89806 -24.97528 -23.88773 -23.50476 -22.29793 -20.36895 -20.00944 -18.53629 -18.23695 -17.53705 -16.90414 -16.48732 -16.21778 -15.47908 -14.84273 -14.73773 -14.54752 -14.50066 -14.30377 -14.17840 -14.06971 -13.60584 -13.37884 -13.08044 -12.87977 -12.33795 -12.19538 -12.02384 -11.79005 -11.59489 -11.40327 -11.32144 -11.15046 -11.13253 -10.88157 -10.60357 -10.22457 -9.71906 -9.69355 -9.45286 -9.39006 -9.07641 -9.00500 -8.47519 -8.17526 -7.75902 -6.08742 -4.13855 -0.12747 0.63784 1.22152 2.21647 2.32743 2.77727 3.28817 3.34989 3.36997 3.77290 3.83933 3.99370 4.06656 4.28943 4.40671 4.44843 4.50532 4.64686 4.83181 4.93921 5.01395 5.08480 5.14994 5.19536 5.26280 5.28909 5.33776 5.55527 5.58512 5.61569 5.78129 5.84581 5.96061 6.03062 6.09154 6.15914 6.25833 6.32685 6.42187 6.62305 6.68359 6.79223 7.00944 7.37147 7.44507 7.74567 7.87099 8.17152 8.28947 8.82110 8.97388 9.51407 10.99357 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.002935 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.312428 B = 9536.304216 C =10692.726473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.132 3.868 4 N -0.584 5.584 5 C 0.245 3.755 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.533 3.467 15 O -0.537 6.537 16 C -0.154 4.154 17 C -0.069 4.069 18 C 0.011 3.989 19 C -0.174 4.174 20 C 0.141 3.859 21 N -0.484 5.484 22 C 0.127 3.873 23 C -0.096 4.096 24 C -0.102 4.102 25 C -0.118 4.118 26 C -0.092 4.092 27 C -0.092 4.092 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.159 0.841 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.672 5.036 6.185 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.314 5.314 5 C 0.126 3.874 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.321 3.679 15 O -0.416 6.416 16 C -0.176 4.176 17 C -0.088 4.088 18 C 0.003 3.997 19 C -0.193 4.193 20 C -0.032 4.032 21 N -0.192 5.192 22 C 0.008 3.992 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.136 4.136 26 C -0.110 4.110 27 C -0.094 4.094 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.889 5.276 6.849 22.607 hybrid contribution 1.525 0.291 -0.636 1.677 sum -19.364 5.567 6.213 21.084 Atomic orbital electron populations 1.23737 0.95659 1.01526 1.02668 1.23548 0.96104 0.99911 0.97984 1.20668 0.92421 0.94168 0.91893 1.48143 1.14576 1.59954 1.08751 1.19348 0.74997 0.94657 0.98409 1.21417 0.93431 0.95899 1.45935 0.92383 1.24929 0.97894 0.95814 0.95395 1.69931 1.14159 1.20189 1.49010 0.86491 0.80220 0.82032 0.78643 1.20523 1.21114 1.19887 1.18119 0.86915 0.79412 0.83491 1.90787 1.55241 1.56098 1.39489 1.23543 0.96990 0.99039 0.98021 1.22074 0.92656 0.95426 0.98682 1.20479 0.93354 0.93901 0.92003 1.22460 0.94658 1.02441 0.99778 1.22712 0.93932 0.91899 0.94608 1.67611 1.36671 1.15565 0.99358 1.18773 0.89378 0.97695 0.93396 1.20801 1.00461 0.99507 0.90706 1.20922 0.93748 0.98812 0.98696 1.20997 0.95925 0.98630 0.98056 1.21011 0.99879 0.98247 0.91885 1.19801 0.94960 1.00760 0.93926 0.88863 0.88573 0.86957 0.91008 0.88701 0.93681 0.94764 0.92658 0.85394 0.84134 0.84052 0.82339 0.84766 0.85306 0.85294 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 14.27 29.02 0.41 -1.69 16 2 C -0.16 -2.09 9.85 -36.02 -0.35 -2.45 16 3 C 0.13 2.04 5.56 -5.19 -0.03 2.01 16 4 N -0.58 -11.99 2.44 -178.01 -0.43 -12.42 16 5 C 0.24 6.24 5.16 -5.19 -0.03 6.21 16 6 C -0.53 -14.68 9.39 -34.44 -0.32 -15.01 16 7 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 10 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.53 10.90 7.61 -12.89 -0.10 10.80 16 15 O -0.54 -13.27 15.81 5.21 0.08 -13.19 16 16 C -0.15 -2.32 8.64 -37.41 -0.32 -2.64 16 17 C -0.07 -0.97 9.15 -37.21 -0.34 -1.31 16 18 C 0.01 0.13 6.07 -102.58 -0.62 -0.49 16 19 C -0.17 -1.81 9.50 -38.85 -0.37 -2.18 16 20 C 0.14 1.43 11.09 -17.67 -0.20 1.23 16 21 N -0.48 -5.93 10.26 -11.12 -0.11 -6.04 16 22 C 0.13 1.58 6.62 -84.90 -0.56 1.02 16 23 C -0.10 -0.98 9.99 -39.43 -0.39 -1.37 16 24 C -0.10 -0.88 9.94 -39.95 -0.40 -1.28 16 25 C -0.12 -1.09 9.97 -39.86 -0.40 -1.49 16 26 C -0.09 -1.03 9.48 -39.66 -0.38 -1.40 16 27 C -0.09 -1.16 5.90 -104.69 -0.62 -1.78 16 28 H 0.09 0.82 7.84 -52.49 -0.41 0.40 16 29 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.07 0.91 5.74 -51.93 -0.30 0.61 16 32 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 33 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.13 1.52 4.30 -52.49 -0.23 1.30 16 37 H 0.14 2.08 6.08 -52.49 -0.32 1.76 16 38 H 0.14 1.15 6.32 -52.49 -0.33 0.82 16 39 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.14 1.42 6.54 -52.49 -0.34 1.08 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -33.90 371.16 -9.50 -43.40 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.24 Total: 1.71 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -5.11 Total: -10.17 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.19 Total: -43.93 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.90 -9.50 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492879352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.558 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds