Wall clock time and date at job start Tue Mar 31 2020 13:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 119.99676 * 2 1 4 4 N 1.46495 * 109.47037 * 124.99929 * 3 2 1 5 5 C 1.46499 * 120.00038 * 269.99540 * 4 3 2 6 6 C 1.50698 * 109.47365 * 270.00117 * 5 4 3 7 7 H 1.08006 * 119.99498 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00407 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99533 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00114 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47435 * 90.00046 * 10 8 6 12 12 H 1.48507 * 109.46849 * 209.99923 * 10 8 6 13 13 H 1.48504 * 109.47031 * 329.99500 * 10 8 6 14 14 C 1.34777 * 120.00405 * 89.99820 * 4 3 2 15 15 O 1.21670 * 120.00410 * 180.02562 * 14 4 3 16 16 C 1.46602 * 119.99767 * 359.97438 * 14 4 3 17 17 C 1.34855 * 120.00192 * 187.19476 * 16 14 4 18 18 C 1.47042 * 119.99866 * 9.34635 * 17 16 14 19 19 C 1.39482 * 121.43303 * 44.53792 * 18 17 16 20 20 C 1.38958 * 119.43926 * 179.97438 * 19 18 17 21 21 N 1.30937 * 122.60711 * 0.02562 * 20 19 18 22 22 C 1.33526 * 122.46980 * 359.95937 * 21 20 19 23 23 C 1.40663 * 121.19026 * 180.02562 * 22 21 20 24 24 C 1.36106 * 119.71361 * 179.97438 * 23 22 21 25 25 C 1.39310 * 121.09992 * 0.03572 * 24 23 22 26 26 C 1.36359 * 120.79661 * 359.97438 * 25 24 23 27 27 C 1.39863 * 119.57099 * 359.97438 * 26 25 24 28 28 H 1.08001 * 119.99714 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.99889 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.00051 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47098 * 4.99348 * 3 2 1 32 32 H 1.09000 * 109.46849 * 244.99426 * 3 2 1 33 33 H 1.09001 * 109.47293 * 29.99965 * 5 4 3 34 34 H 1.09000 * 109.47359 * 150.00215 * 5 4 3 35 35 H 0.97000 * 119.99516 * 179.97438 * 9 8 6 36 36 H 1.07999 * 119.99984 * 7.19245 * 16 14 4 37 37 H 1.08001 * 120.00380 * 189.35135 * 17 16 14 38 38 H 1.08005 * 120.28265 * 359.97438 * 19 18 17 39 39 H 1.08003 * 118.69318 * 179.97438 * 20 19 18 40 40 H 1.08007 * 120.14330 * 359.97438 * 23 22 21 41 41 H 1.08000 * 119.44963 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.59956 * 180.25989 * 25 24 23 43 43 H 1.07999 * 120.21624 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3039 3.8370 1.6366 8 6 2.5183 4.0670 3.6081 9 7 1.9579 3.4664 4.6352 10 14 2.8714 5.9000 3.6765 11 1 1.6985 6.6497 3.1595 12 1 3.1350 6.3011 5.0819 13 1 4.0616 6.2063 2.8428 14 6 4.2497 0.8663 0.9825 15 8 5.0221 0.8882 1.9223 16 6 4.6848 0.3324 -0.3117 17 6 5.8884 -0.2653 -0.4243 18 6 6.6753 -0.5664 0.7808 19 6 6.0859 -1.1297 1.9126 20 6 6.8690 -1.3977 3.0287 21 7 8.1525 -1.1420 3.0681 22 6 8.8082 -0.6040 2.0368 23 6 10.1882 -0.3410 2.1082 24 6 10.8266 0.2076 1.0386 25 6 10.1359 0.5159 -0.1313 26 6 8.7979 0.2749 -0.2362 27 6 8.1114 -0.2891 0.8440 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1317 0.0894 32 1 2.6213 1.4026 -0.9314 33 1 1.4887 1.6968 2.5459 34 1 3.0989 1.3606 3.2259 35 1 1.7290 3.9751 5.4287 36 1 4.0414 0.4176 -1.1749 37 1 6.2745 -0.5227 -1.3995 38 1 5.0298 -1.3556 1.9213 39 1 6.4001 -1.8335 3.8986 40 1 10.7388 -0.5733 3.0078 41 1 11.8863 0.4075 1.0979 42 1 10.6675 0.9467 -0.9668 43 1 8.2718 0.5172 -1.1477 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492879353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:00 Heat of formation + Delta-G solvation = 76.615794 kcal Electronic energy + Delta-G solvation = -26307.905677 eV Core-core repulsion = 22705.735224 eV Total energy + Delta-G solvation = -3602.170453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.48356 -39.21211 -36.88078 -35.90306 -34.48440 -33.18661 -32.15336 -31.42259 -30.31998 -29.46121 -27.74004 -25.62657 -24.68543 -23.56660 -23.23771 -22.12206 -20.54859 -19.86472 -18.42667 -17.63867 -17.43101 -16.64102 -16.48473 -16.04849 -15.28598 -14.84122 -14.58766 -14.35507 -14.25706 -14.14823 -13.84803 -13.73632 -13.55924 -13.00533 -12.79744 -12.76942 -12.20792 -12.08402 -11.75314 -11.57382 -11.46498 -11.32605 -11.24271 -11.12787 -10.92772 -10.62713 -10.50442 -10.18289 -9.69656 -9.28477 -9.25171 -9.23372 -8.98046 -8.45806 -8.44871 -7.76494 -7.60744 -6.06852 -4.11579 0.34568 1.10157 1.41124 2.36046 2.41095 3.16647 3.28257 3.35584 3.39833 3.83010 3.99467 4.30238 4.43160 4.51428 4.61026 4.82396 4.86935 4.94558 5.00848 5.17086 5.25147 5.28192 5.32554 5.36103 5.36741 5.51503 5.63434 5.71595 5.82084 5.94577 6.00822 6.12777 6.14597 6.21647 6.24355 6.32135 6.47361 6.59821 6.73917 6.74226 6.86398 7.02608 7.05727 7.39608 7.48924 7.89258 8.19649 8.22619 8.33091 8.85912 9.02265 9.53624 11.01164 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.004109 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.052840 B = 6813.320405 C = 8138.434031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 C 0.133 3.867 4 N -0.582 5.582 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.056 0.944 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.524 3.476 15 O -0.527 6.527 16 C -0.178 4.178 17 C -0.058 4.058 18 C -0.007 4.007 19 C -0.086 4.086 20 C 0.137 3.863 21 N -0.483 5.483 22 C 0.121 3.879 23 C -0.089 4.089 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.096 4.096 27 C -0.084 4.084 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -10.409 -13.207 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C 0.009 3.991 4 N -0.312 5.312 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.199 1.199 14 C 0.312 3.688 15 O -0.406 6.406 16 C -0.199 4.199 17 C -0.077 4.077 18 C -0.015 4.015 19 C -0.106 4.106 20 C -0.034 4.034 21 N -0.192 5.192 22 C 0.000 4.000 23 C -0.108 4.108 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.115 4.115 27 C -0.086 4.086 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.498 -10.480 -11.758 17.897 hybrid contribution -0.652 1.450 -0.669 1.724 sum 7.846 -9.031 -12.427 17.249 Atomic orbital electron populations 1.23834 0.95870 1.01794 1.00451 1.23428 0.96380 0.98935 1.00009 1.20645 0.93103 0.95441 0.89862 1.48259 1.10225 1.59095 1.13611 1.19287 0.95388 0.93818 0.78628 1.21404 1.40595 0.93243 1.01305 0.92540 1.24912 0.95008 0.98711 0.95312 1.69928 1.41955 1.36154 1.05191 0.86522 0.78595 0.85062 0.77416 1.20606 1.21043 1.19935 1.18324 0.82553 0.79739 0.88209 1.90865 1.51749 1.56411 1.41588 1.23524 0.96959 1.00456 0.98954 1.22019 0.92926 0.96285 0.96501 1.20144 0.91158 0.95963 0.94276 1.22140 0.99986 0.96226 0.92292 1.22619 0.89024 0.94605 0.97166 1.67547 1.10560 1.12694 1.28382 1.18709 0.94140 0.97879 0.89298 1.20784 0.92103 0.98838 0.99075 1.20785 1.00066 0.99329 0.93296 1.20860 0.94418 1.00730 0.98110 1.20798 0.94493 0.98478 0.97732 1.19707 0.92737 1.00733 0.95406 0.88750 0.88285 0.87717 0.89431 0.90608 0.94955 0.93776 0.92703 0.84757 0.84668 0.85162 0.82827 0.85100 0.85765 0.85921 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.01 0.42 -1.81 16 2 C -0.17 -2.23 9.85 -36.03 -0.35 -2.59 16 3 C 0.13 2.05 5.60 -5.20 -0.03 2.02 16 4 N -0.58 -11.76 2.44 -178.02 -0.43 -12.19 16 5 C 0.25 6.31 5.16 -5.20 -0.03 6.29 16 6 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.52 10.29 6.74 -12.89 -0.09 10.21 16 15 O -0.53 -12.39 11.62 5.22 0.06 -12.33 16 16 C -0.18 -2.52 9.21 -37.41 -0.34 -2.87 16 17 C -0.06 -0.75 8.93 -37.21 -0.33 -1.08 16 18 C -0.01 -0.11 4.74 -102.58 -0.49 -0.60 16 19 C -0.09 -1.44 6.69 -38.85 -0.26 -1.70 16 20 C 0.14 2.29 11.09 -17.67 -0.20 2.10 16 21 N -0.48 -8.56 10.26 -11.11 -0.11 -8.68 16 22 C 0.12 2.03 6.62 -84.90 -0.56 1.47 16 23 C -0.09 -1.25 9.99 -39.43 -0.39 -1.65 16 24 C -0.11 -1.34 9.94 -39.95 -0.40 -1.73 16 25 C -0.12 -1.41 9.97 -39.86 -0.40 -1.81 16 26 C -0.10 -1.26 9.48 -39.65 -0.38 -1.64 16 27 C -0.08 -1.34 5.90 -104.69 -0.62 -1.96 16 28 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.10 1.20 7.84 -52.48 -0.41 0.79 16 30 H 0.10 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 32 H 0.08 0.95 6.02 -51.93 -0.31 0.64 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 1.46 6.15 -52.49 -0.32 1.13 16 37 H 0.14 1.24 7.81 -52.49 -0.41 0.83 16 38 H 0.13 2.11 7.09 -52.48 -0.37 1.74 16 39 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.34 7.19 -52.49 -0.38 0.96 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -34.42 367.33 -9.60 -44.02 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.49 Total: 3.14 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -4.87 Total: -10.77 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.19 Total: -46.58 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.06 Total: -12.33 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.42 -9.60 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492879353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.635 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds