Wall clock time and date at job start Tue Mar 31 2020 13:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50703 * 119.99999 * 2 1 4 4 N 1.46496 * 109.47468 * 124.99725 * 3 2 1 5 5 C 1.46499 * 120.00321 * 270.00443 * 4 3 2 6 6 C 1.50700 * 109.46912 * 269.99844 * 5 4 3 7 7 H 1.07993 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99664 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00245 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99918 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46882 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47073 * 119.99555 * 10 8 6 13 13 H 1.48497 * 109.46984 * 239.99694 * 10 8 6 14 14 C 1.34777 * 119.99614 * 90.00381 * 4 3 2 15 15 O 1.21653 * 119.99880 * 180.02562 * 14 4 3 16 16 C 1.46763 * 120.00299 * 359.97438 * 14 4 3 17 17 C 1.34616 * 119.99962 * 180.27928 * 16 14 4 18 18 C 1.47402 * 119.99741 * 179.72466 * 17 16 14 19 19 C 1.40637 * 119.27841 * 179.72670 * 18 17 16 20 20 C 1.36316 * 119.80089 * 179.73822 * 19 18 17 21 21 C 1.40894 * 118.30169 * 0.49854 * 20 19 18 22 22 C 1.40361 * 121.22406 * 179.78591 * 21 20 19 23 23 C 1.36179 * 119.66093 * 179.97438 * 22 21 20 24 24 C 1.39396 * 120.90353 * 0.02562 * 23 22 21 25 25 C 1.36033 * 121.06678 * 359.97438 * 24 23 22 26 26 C 1.40792 * 119.74207 * 359.97438 * 25 24 23 27 27 N 1.32147 * 119.27775 * 0.02562 * 18 17 16 28 28 H 1.08001 * 120.00528 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99884 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00820 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46831 * 4.99744 * 3 2 1 32 32 H 1.09002 * 109.47463 * 245.00476 * 3 2 1 33 33 H 1.08996 * 109.47092 * 29.99659 * 5 4 3 34 34 H 1.09000 * 109.46912 * 150.00008 * 5 4 3 35 35 H 0.97000 * 120.00290 * 180.02562 * 9 8 6 36 36 H 1.08002 * 119.99541 * 359.97438 * 16 14 4 37 37 H 1.08001 * 119.99905 * 359.72517 * 17 16 14 38 38 H 1.08005 * 120.09869 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.85349 * 180.26830 * 20 19 18 40 40 H 1.08000 * 120.16693 * 359.95734 * 22 21 20 41 41 H 1.07998 * 119.54697 * 180.02562 * 23 22 21 42 42 H 1.07993 * 119.46819 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.13003 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3038 3.8370 1.6368 8 6 2.5191 4.0666 3.6086 9 7 1.9598 3.4658 4.6361 10 14 2.8735 5.8994 3.6777 11 1 3.5022 6.3304 2.4033 12 1 1.6033 6.6419 3.8795 13 1 3.7970 6.1828 4.8055 14 6 4.2496 0.8664 0.9823 15 8 5.0220 0.8883 1.9220 16 6 4.6852 0.3319 -0.3133 17 6 5.9379 -0.1384 -0.4606 18 6 6.3734 -0.6808 -1.7601 19 6 7.6873 -1.1628 -1.8988 20 6 8.0997 -1.6716 -3.0943 21 6 7.1844 -1.6864 -4.1653 22 6 7.5454 -2.1920 -5.4240 23 6 6.6351 -2.1914 -6.4368 24 6 5.3474 -1.6944 -6.2418 25 6 4.9622 -1.1966 -5.0359 26 6 5.8741 -1.1808 -3.9633 27 7 5.5225 -0.6980 -2.7711 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6212 1.4027 -0.9314 33 1 1.4887 1.6967 2.5459 34 1 3.0989 1.3604 3.2259 35 1 1.7309 3.9744 5.4297 36 1 3.9990 0.3113 -1.1471 37 1 6.6238 -0.1182 0.3735 38 1 8.3662 -1.1341 -1.0592 39 1 9.1035 -2.0503 -3.2184 40 1 8.5400 -2.5794 -5.5883 41 1 6.9147 -2.5813 -7.4044 42 1 4.6442 -1.7048 -7.0613 43 1 3.9606 -0.8157 -4.9015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492916129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:52 Heat of formation + Delta-G solvation = 61.994752 kcal Electronic energy + Delta-G solvation = -25212.555445 eV Core-core repulsion = 21609.750976 eV Total energy + Delta-G solvation = -3602.804469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98777 -39.09626 -37.52760 -35.67433 -33.92435 -33.36871 -32.93501 -32.02169 -30.45036 -29.82871 -27.70023 -25.67208 -25.05409 -23.89161 -22.95710 -22.35506 -20.78460 -19.78064 -18.55627 -18.05551 -17.35586 -16.86563 -16.40967 -16.13140 -15.40236 -14.90009 -14.68787 -14.68607 -14.58026 -14.31765 -14.05114 -13.96459 -13.36902 -13.27223 -12.93178 -12.71401 -12.29510 -12.13028 -11.91088 -11.85115 -11.61106 -11.47914 -11.25216 -11.03086 -10.84200 -10.82509 -10.58627 -10.16940 -9.91735 -9.69769 -9.59418 -9.13567 -8.99891 -8.71599 -8.41480 -8.29528 -7.65261 -6.02060 -4.06655 0.00298 0.44646 1.57526 1.89403 2.51605 2.86302 3.31582 3.39042 3.43549 3.84466 3.88028 4.02500 4.09840 4.30577 4.44446 4.50508 4.55893 4.62475 4.86176 4.91225 5.07185 5.14294 5.26220 5.32020 5.36562 5.40999 5.48706 5.53743 5.69291 5.74343 5.75814 5.86368 6.05863 6.07534 6.14145 6.24035 6.28005 6.38745 6.52049 6.60845 6.86181 6.97712 7.13614 7.46951 7.56557 7.73754 7.94563 8.25395 8.40673 8.91225 9.07792 9.58202 11.06036 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002678 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.700480 B =10452.359703 C =11191.546971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.133 3.867 4 N -0.584 5.584 5 C 0.246 3.754 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.528 3.472 15 O -0.539 6.539 16 C -0.132 4.132 17 C -0.077 4.077 18 C 0.192 3.808 19 C -0.154 4.154 20 C -0.061 4.061 21 C -0.108 4.108 22 C -0.096 4.096 23 C -0.121 4.121 24 C -0.104 4.104 25 C -0.091 4.091 26 C 0.134 3.866 27 N -0.468 5.468 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 -12.992 -22.117 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.184 4.184 3 C 0.010 3.990 4 N -0.313 5.313 5 C 0.127 3.873 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.316 3.684 15 O -0.419 6.419 16 C -0.156 4.156 17 C -0.097 4.097 18 C 0.043 3.957 19 C -0.174 4.174 20 C -0.086 4.086 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.139 4.139 24 C -0.124 4.124 25 C -0.110 4.110 26 C 0.011 3.989 27 N -0.177 5.177 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.061 -12.615 -21.406 25.830 hybrid contribution 0.907 0.653 -0.037 1.119 sum 7.968 -11.962 -21.442 25.814 Atomic orbital electron populations 1.23798 0.95822 1.01697 1.00892 1.23433 0.96379 0.99023 0.99582 1.20662 0.93073 0.95400 0.89905 1.48153 1.10294 1.59152 1.13723 1.19319 0.95527 0.93830 0.78660 1.21473 1.40380 0.93240 1.01278 0.92338 1.24936 0.95087 0.98766 0.95332 1.69946 1.42165 1.36063 1.05174 0.86446 0.77895 0.84970 0.78140 1.19770 1.20982 1.20889 1.18311 0.82711 0.79317 0.88015 1.90768 1.52658 1.56693 1.41755 1.23640 0.97268 0.96741 0.97915 1.22126 0.97120 0.97064 0.93426 1.20270 0.89762 0.93045 0.92611 1.21933 0.96692 0.99780 0.98998 1.21405 0.99184 0.96109 0.91909 1.18931 0.94979 1.01678 0.95401 1.20969 0.99817 0.98895 0.91813 1.20931 0.93702 0.99954 0.99273 1.20906 0.96443 0.97810 0.97228 1.20894 0.99496 0.99298 0.91278 1.18891 0.91752 0.96219 0.92036 1.68074 1.35190 1.15411 0.99014 0.88305 0.88829 0.87723 0.89364 0.90341 0.94796 0.93750 0.92789 0.84337 0.83672 0.83907 0.84203 0.85379 0.85645 0.85313 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.32 29.02 0.42 -2.09 16 2 C -0.16 -2.49 9.85 -36.02 -0.35 -2.85 16 3 C 0.13 2.28 5.56 -5.19 -0.03 2.25 16 4 N -0.58 -12.75 2.44 -177.96 -0.43 -13.19 16 5 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 6 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 10 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.53 11.42 7.61 -12.82 -0.10 11.33 16 15 O -0.54 -13.76 15.81 5.23 0.08 -13.67 16 16 C -0.13 -2.22 8.74 -37.42 -0.33 -2.55 16 17 C -0.08 -1.15 9.43 -37.13 -0.35 -1.50 16 18 C 0.19 2.58 6.71 -83.10 -0.56 2.02 16 19 C -0.15 -1.62 9.73 -39.37 -0.38 -2.00 16 20 C -0.06 -0.56 9.88 -39.27 -0.39 -0.94 16 21 C -0.11 -1.13 5.75 -106.70 -0.61 -1.74 16 22 C -0.10 -0.76 9.76 -39.52 -0.39 -1.15 16 23 C -0.12 -0.86 9.96 -39.89 -0.40 -1.26 16 24 C -0.10 -0.81 9.94 -39.94 -0.40 -1.21 16 25 C -0.09 -0.93 9.99 -39.41 -0.39 -1.32 16 26 C 0.13 1.65 6.61 -84.85 -0.56 1.09 16 27 N -0.47 -6.53 9.25 -7.66 -0.07 -6.60 16 28 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 29 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.09 1.54 7.72 -51.93 -0.40 1.14 16 32 H 0.08 1.17 6.10 -51.93 -0.32 0.86 16 33 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 2.12 5.54 -52.49 -0.29 1.83 16 37 H 0.15 2.14 7.52 -52.49 -0.39 1.75 16 38 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -34.61 376.28 -9.85 -44.46 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.55 Total: 1.49 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -5.27 Total: -9.14 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.23 Total: -45.86 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.61 -9.85 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492916129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.452 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds