Wall clock time and date at job start Tue Mar 31 2020 13:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50703 * 119.99999 * 2 1 4 4 N 1.46496 * 109.47468 * 124.99725 * 3 2 1 5 5 C 1.46499 * 120.00321 * 270.00443 * 4 3 2 6 6 C 1.50700 * 109.46912 * 269.99844 * 5 4 3 7 7 H 1.07993 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99664 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00245 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99918 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46882 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47073 * 119.99555 * 10 8 6 13 13 H 1.48497 * 109.46984 * 239.99694 * 10 8 6 14 14 C 1.34777 * 119.99614 * 90.00381 * 4 3 2 15 15 O 1.21653 * 119.99880 * 180.02562 * 14 4 3 16 16 C 1.46763 * 120.00299 * 359.97438 * 14 4 3 17 17 C 1.34616 * 119.99962 * 180.27928 * 16 14 4 18 18 C 1.47402 * 119.99741 * 179.72466 * 17 16 14 19 19 C 1.40637 * 119.27841 * 179.72670 * 18 17 16 20 20 C 1.36316 * 119.80089 * 179.73822 * 19 18 17 21 21 C 1.40894 * 118.30169 * 0.49854 * 20 19 18 22 22 C 1.40361 * 121.22406 * 179.78591 * 21 20 19 23 23 C 1.36179 * 119.66093 * 179.97438 * 22 21 20 24 24 C 1.39396 * 120.90353 * 0.02562 * 23 22 21 25 25 C 1.36033 * 121.06678 * 359.97438 * 24 23 22 26 26 C 1.40792 * 119.74207 * 359.97438 * 25 24 23 27 27 N 1.32147 * 119.27775 * 0.02562 * 18 17 16 28 28 H 1.08001 * 120.00528 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99884 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00820 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46831 * 4.99744 * 3 2 1 32 32 H 1.09002 * 109.47463 * 245.00476 * 3 2 1 33 33 H 1.08996 * 109.47092 * 29.99659 * 5 4 3 34 34 H 1.09000 * 109.46912 * 150.00008 * 5 4 3 35 35 H 0.97000 * 120.00290 * 180.02562 * 9 8 6 36 36 H 1.08002 * 119.99541 * 359.97438 * 16 14 4 37 37 H 1.08001 * 119.99905 * 359.72517 * 17 16 14 38 38 H 1.08005 * 120.09869 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.85349 * 180.26830 * 20 19 18 40 40 H 1.08000 * 120.16693 * 359.95734 * 22 21 20 41 41 H 1.07998 * 119.54697 * 180.02562 * 23 22 21 42 42 H 1.07993 * 119.46819 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.13003 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3437 2.4803 7 1 3.3038 3.8370 1.6368 8 6 2.5191 4.0666 3.6086 9 7 1.9598 3.4658 4.6361 10 14 2.8735 5.8994 3.6777 11 1 3.5022 6.3304 2.4033 12 1 1.6033 6.6419 3.8795 13 1 3.7970 6.1828 4.8055 14 6 4.2496 0.8664 0.9823 15 8 5.0220 0.8883 1.9220 16 6 4.6852 0.3319 -0.3133 17 6 5.9379 -0.1384 -0.4606 18 6 6.3734 -0.6808 -1.7601 19 6 7.6873 -1.1628 -1.8988 20 6 8.0997 -1.6716 -3.0943 21 6 7.1844 -1.6864 -4.1653 22 6 7.5454 -2.1920 -5.4240 23 6 6.6351 -2.1914 -6.4368 24 6 5.3474 -1.6944 -6.2418 25 6 4.9622 -1.1966 -5.0359 26 6 5.8741 -1.1808 -3.9633 27 7 5.5225 -0.6980 -2.7711 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3584 2.1316 0.0895 32 1 2.6212 1.4027 -0.9314 33 1 1.4887 1.6967 2.5459 34 1 3.0989 1.3604 3.2259 35 1 1.7309 3.9744 5.4297 36 1 3.9990 0.3113 -1.1471 37 1 6.6238 -0.1182 0.3735 38 1 8.3662 -1.1341 -1.0592 39 1 9.1035 -2.0503 -3.2184 40 1 8.5400 -2.5794 -5.5883 41 1 6.9147 -2.5813 -7.4044 42 1 4.6442 -1.7048 -7.0613 43 1 3.9606 -0.8157 -4.9015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492916129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:51 Heat of formation + Delta-G solvation = 42.375255 kcal Electronic energy + Delta-G solvation = -25213.406210 eV Core-core repulsion = 21609.750976 eV Total energy + Delta-G solvation = -3603.655234 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76949 -40.76888 -38.31400 -37.29305 -35.23664 -34.70331 -34.14431 -33.70053 -31.25712 -30.76521 -29.54481 -27.04140 -26.45321 -24.95534 -24.34880 -23.05627 -22.16743 -21.01564 -19.71810 -19.19290 -18.65189 -18.20574 -18.05192 -17.36397 -16.87175 -16.22902 -16.12958 -15.72303 -15.50384 -15.41829 -15.36481 -14.85194 -14.64256 -14.35818 -14.19599 -13.98675 -13.96614 -13.36893 -13.11613 -13.03766 -12.96773 -12.82181 -12.59655 -12.49649 -12.29798 -12.27676 -12.22137 -11.67329 -11.56300 -10.98198 -10.78691 -10.65916 -10.54541 -10.33729 -9.59779 -9.42687 -9.10690 -8.23156 -6.38163 -0.87587 -0.30561 0.53618 1.10279 1.30717 1.36095 1.38303 1.50756 2.00619 2.29530 2.45487 2.47500 3.03800 3.06335 3.17219 3.49863 3.66887 3.84283 3.90517 3.99221 4.08384 4.14781 4.21228 4.28004 4.32770 4.40866 4.49593 4.55015 4.79831 4.83796 4.90221 4.98817 5.02929 5.07024 5.12945 5.17577 5.25984 5.30674 5.44851 5.50598 5.51410 5.59557 5.69000 5.74589 5.92749 5.93948 6.04504 6.65352 6.72397 6.86334 7.24066 7.39615 8.84363 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.002678 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.700480 B =10452.359703 C =11191.546971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.184 4.184 3 C 0.133 3.867 4 N -0.590 5.590 5 C 0.263 3.737 6 C -0.543 4.543 7 H 0.052 0.948 8 C 0.008 3.992 9 N -0.927 5.927 10 Si 0.969 3.031 11 H -0.268 1.268 12 H -0.268 1.268 13 H -0.280 1.280 14 C 0.525 3.475 15 O -0.593 6.593 16 C -0.157 4.157 17 C -0.043 4.043 18 C 0.162 3.838 19 C -0.163 4.163 20 C -0.050 4.050 21 C -0.119 4.119 22 C -0.098 4.098 23 C -0.115 4.115 24 C -0.094 4.094 25 C -0.117 4.117 26 C 0.101 3.899 27 N -0.489 5.489 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.024 0.976 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.180 0.820 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.915 -13.770 -25.726 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.203 4.203 3 C 0.011 3.989 4 N -0.319 5.319 5 C 0.142 3.858 6 C -0.581 4.581 7 H 0.070 0.930 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.793 3.207 11 H -0.192 1.192 12 H -0.193 1.193 13 H -0.206 1.206 14 C 0.316 3.684 15 O -0.477 6.477 16 C -0.180 4.180 17 C -0.063 4.063 18 C 0.013 3.987 19 C -0.183 4.183 20 C -0.075 4.075 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.133 4.133 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.022 4.022 27 N -0.199 5.199 28 H 0.120 0.880 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.197 0.803 40 H 0.179 0.821 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.319 -13.404 -25.058 29.610 hybrid contribution 0.553 0.739 0.851 1.256 sum 8.872 -12.665 -24.206 28.724 Atomic orbital electron populations 1.24045 0.95260 1.03024 0.98028 1.23281 0.96909 0.97993 1.02135 1.20846 0.92567 0.96521 0.88952 1.48123 1.11456 1.58952 1.13343 1.18760 0.94050 0.92881 0.80090 1.21703 1.40698 0.94257 1.01476 0.92972 1.25864 0.94581 1.03865 0.94753 1.70061 1.42748 1.38101 1.05780 0.85345 0.78291 0.78858 0.78174 1.19246 1.19258 1.20567 1.19014 0.81958 0.78289 0.89147 1.90717 1.53984 1.59111 1.43857 1.23213 0.98669 1.00370 0.95765 1.22324 0.95972 0.93617 0.94420 1.20167 0.91399 0.95373 0.91753 1.22122 0.95671 0.99876 1.00594 1.21854 1.00532 0.94479 0.90684 1.19293 0.94390 1.01336 0.97036 1.21375 1.01516 0.98091 0.90661 1.21408 0.92947 0.98372 1.00571 1.21305 0.97453 0.95751 0.96837 1.21054 0.99514 1.01006 0.92035 1.19297 0.93486 0.97495 0.91895 1.67944 1.36135 1.15873 0.99898 0.87967 0.86425 0.87435 0.90007 0.88264 0.95783 0.98231 0.92324 0.82981 0.83876 0.81902 0.80275 0.82142 0.82210 0.82603 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 14.32 67.79 0.97 -3.42 16 2 C -0.18 -5.66 9.85 25.66 0.25 -5.40 16 3 C 0.13 4.74 5.56 85.63 0.48 5.22 16 4 N -0.59 -27.42 2.44 -835.17 -2.04 -29.45 16 5 C 0.26 14.93 5.16 85.63 0.44 15.38 16 6 C -0.54 -32.47 9.39 25.60 0.24 -32.23 16 7 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 10 Si 0.97 46.02 29.54 68.60 2.03 48.04 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 14 C 0.52 24.26 7.61 86.47 0.66 24.92 16 15 O -0.59 -32.56 15.81 -4.20 -0.07 -32.62 16 16 C -0.16 -5.58 8.74 23.67 0.21 -5.38 16 17 C -0.04 -1.34 9.43 23.85 0.22 -1.12 16 18 C 0.16 4.37 6.71 42.10 0.28 4.66 16 19 C -0.16 -3.22 9.73 22.41 0.22 -3.00 16 20 C -0.05 -0.78 9.88 22.47 0.22 -0.56 16 21 C -0.12 -2.19 5.75 -21.21 -0.12 -2.31 16 22 C -0.10 -1.15 9.76 22.31 0.22 -0.93 16 23 C -0.12 -1.15 9.96 22.07 0.22 -0.93 16 24 C -0.09 -1.19 9.94 22.04 0.22 -0.97 16 25 C -0.12 -2.27 9.99 22.38 0.22 -2.05 16 26 C 0.10 2.42 6.61 40.44 0.27 2.69 16 27 N -0.49 -13.83 9.25 -178.14 -1.65 -15.48 16 28 H 0.10 2.64 7.84 -2.91 -0.02 2.61 16 29 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.11 3.24 8.06 -2.91 -0.02 3.22 16 31 H 0.08 2.97 7.72 -2.38 -0.02 2.95 16 32 H 0.10 3.06 6.10 -2.39 -0.01 3.05 16 33 H 0.02 1.39 8.07 -2.39 -0.02 1.37 16 34 H 0.00 -0.03 7.42 -2.39 -0.02 -0.04 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.15 4.89 5.54 -2.91 -0.02 4.87 16 37 H 0.14 4.46 7.52 -2.91 -0.02 4.44 16 38 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 41 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 42 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -80.43 376.28 5.25 -75.18 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.01 Total: 15.77 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 5.68 Total: -4.48 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -3.40 Total: -101.88 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.07 Total: -32.62 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -80.43 5.25 -75.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492916129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.556 kcal (2) G-P(sol) polarization free energy of solvation -80.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds