Wall clock time and date at job start Tue Mar 31 2020 13:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 120.00217 * 2 1 4 4 N 1.34783 * 119.99570 * 179.97438 * 2 1 3 5 5 C 1.40069 * 119.99619 * 185.17028 * 4 2 1 6 6 C 1.38467 * 120.00953 * 24.44134 * 5 4 2 7 7 C 1.39578 * 119.80126 * 179.81799 * 6 5 4 8 8 C 1.47740 * 120.08580 * 180.21206 * 7 6 5 9 9 O 1.21564 * 120.00105 * 325.95085 * 8 7 6 10 10 N 1.34779 * 119.99857 * 145.95469 * 8 7 6 11 11 C 1.46506 * 119.99816 * 174.32829 * 10 8 7 12 12 C 1.50704 * 109.46830 * 90.00144 * 11 10 8 13 13 H 1.07997 * 119.99785 * 0.02562 * 12 11 10 14 14 C 1.37869 * 119.99684 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00087 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00236 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47062 * 89.99991 * 16 14 12 18 18 H 1.48499 * 109.47042 * 209.99799 * 16 14 12 19 19 H 1.48496 * 109.47014 * 329.99930 * 16 14 12 20 20 C 1.46499 * 120.00037 * 354.33258 * 10 8 7 21 21 C 1.53006 * 109.47020 * 119.78369 * 20 10 8 22 22 C 1.52999 * 109.46942 * 239.77794 * 20 10 8 23 23 C 1.39656 * 119.82488 * 0.43796 * 7 6 5 24 24 C 1.37905 * 120.01260 * 359.79096 * 23 7 6 25 25 C 1.38506 * 120.19421 * 0.02562 * 24 23 7 26 26 F 1.35093 * 119.90954 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47637 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46927 * 300.00248 * 1 2 3 29 29 H 1.09003 * 109.47078 * 59.99885 * 1 2 3 30 30 H 0.96998 * 120.00144 * 5.44264 * 4 2 1 31 31 H 1.07993 * 120.09702 * 0.02799 * 6 5 4 32 32 H 1.08997 * 109.46784 * 210.00263 * 11 10 8 33 33 H 1.08995 * 109.47216 * 330.00519 * 11 10 8 34 34 H 0.96997 * 120.00701 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.46984 * 359.78422 * 20 10 8 36 36 H 1.08993 * 109.46975 * 59.99754 * 21 20 10 37 37 H 1.08994 * 109.47033 * 180.02562 * 21 20 10 38 38 H 1.09000 * 109.46892 * 299.99626 * 21 20 10 39 39 H 1.09007 * 109.46909 * 60.00477 * 22 20 10 40 40 H 1.09000 * 109.47402 * 179.97438 * 22 20 10 41 41 H 1.08993 * 109.47554 * 300.00553 * 22 20 10 42 42 H 1.07999 * 119.99501 * 179.77603 * 23 7 6 43 43 H 1.07991 * 119.90300 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5773 -1.1697 0.1098 6 6 4.2270 -0.1026 0.7067 7 6 5.6185 -0.1113 0.8167 8 6 6.3179 1.0219 1.4566 9 8 5.8829 2.1507 1.3364 10 7 7.4381 0.8042 2.1736 11 6 8.2005 1.9375 2.7035 12 6 7.6909 2.2869 4.0781 13 1 6.8805 1.7211 4.5135 14 6 8.2598 3.3281 4.7801 15 7 7.8155 3.6328 5.9799 16 14 9.6619 4.3063 4.0272 17 1 9.1103 5.4523 3.2606 18 1 10.5474 4.8130 5.1064 19 1 10.4427 3.4313 3.1163 20 6 7.8936 -0.5657 2.4229 21 6 9.2907 -0.7549 1.8284 22 6 7.9423 -0.8204 3.9308 23 6 6.3481 -1.1918 0.3162 24 6 5.6936 -2.2485 -0.2811 25 6 4.3127 -2.2423 -0.3873 26 9 3.6775 -3.2803 -0.9739 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6991 -2.0055 -0.0788 31 1 3.6587 0.7324 1.0889 32 1 9.2552 1.6692 2.7644 33 1 8.0815 2.7962 2.0429 34 1 8.2155 4.3656 6.4737 35 1 7.2025 -1.2686 1.9577 36 1 9.9816 -0.0519 2.2935 37 1 9.6293 -1.7742 2.0135 38 1 9.2560 -0.5734 0.7542 39 1 6.9470 -0.6857 4.3544 40 1 8.2807 -1.8398 4.1164 41 1 8.6333 -0.1175 4.3959 42 1 7.4250 -1.1996 0.3966 43 1 6.2596 -3.0829 -0.6679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522586041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:37 Heat of formation + Delta-G solvation = -66.170114 kcal Electronic energy + Delta-G solvation = -27787.395750 eV Core-core repulsion = 23748.264411 eV Total energy + Delta-G solvation = -4039.131339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.15038 -40.79054 -39.73403 -37.80264 -36.15932 -35.04052 -32.75520 -31.28657 -31.04666 -30.83837 -28.97986 -27.73046 -26.81509 -24.07357 -23.43969 -22.19855 -21.27402 -20.73831 -19.18793 -17.86154 -17.67472 -17.20191 -16.83582 -16.56125 -15.99357 -15.63607 -15.40728 -15.19685 -14.52612 -14.40492 -14.18047 -13.79024 -13.66419 -13.53555 -13.25303 -12.98848 -12.88970 -12.74725 -12.48393 -12.47427 -12.11455 -11.86319 -11.73516 -11.62027 -11.39886 -11.01123 -10.94602 -10.76862 -10.48143 -10.18131 -10.08973 -9.90692 -9.44578 -9.14051 -8.88012 -8.53818 -8.21886 -7.71261 -6.03751 -4.01072 0.71388 1.07580 2.31054 2.68362 3.14448 3.31323 3.36938 3.39881 3.61457 3.91172 3.98142 4.39323 4.43266 4.58149 4.73157 4.81930 4.96335 5.08161 5.15938 5.23518 5.26228 5.30333 5.45414 5.48602 5.61428 5.68809 5.89870 5.93401 5.94911 6.05933 6.11663 6.25574 6.30262 6.34850 6.53823 6.73748 6.80209 6.97085 7.01636 7.03764 7.36688 7.65336 7.82435 8.24059 8.51387 8.92670 9.02178 9.56507 11.09530 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.003943 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.835636 B = 7099.514186 C = 8305.570025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.505 3.495 3 O -0.508 6.508 4 N -0.670 5.670 5 C 0.110 3.890 6 C -0.055 4.055 7 C -0.102 4.102 8 C 0.547 3.453 9 O -0.522 6.522 10 N -0.579 5.579 11 C 0.216 3.784 12 C -0.520 4.520 13 H 0.077 0.923 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.872 3.128 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.110 3.890 21 C -0.167 4.167 22 C -0.156 4.156 23 C -0.092 4.092 24 C -0.139 4.139 25 C 0.076 3.924 26 F -0.139 7.139 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.413 0.587 31 H 0.166 0.834 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.152 0.848 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -17.291 -12.907 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.382 6.382 4 N -0.316 5.316 5 C 0.015 3.985 6 C -0.076 4.076 7 C -0.106 4.106 8 C 0.333 3.667 9 O -0.398 6.398 10 N -0.310 5.310 11 C 0.096 3.904 12 C -0.559 4.559 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.699 3.301 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.191 1.191 20 C 0.006 3.994 21 C -0.225 4.225 22 C -0.213 4.213 23 C -0.111 4.111 24 C -0.158 4.158 25 C 0.054 3.946 26 F -0.118 7.118 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.250 0.750 31 H 0.183 0.817 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.169 0.831 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.052 -15.779 -12.804 21.858 hybrid contribution 0.363 -0.147 -0.334 0.514 sum -7.689 -15.926 -13.137 22.031 Atomic orbital electron populations 1.21853 0.90252 1.04542 1.06011 1.21128 0.91106 0.82968 0.75448 1.90820 1.69931 1.31060 1.46383 1.43573 1.04548 1.10460 1.72980 1.17622 0.83485 0.96069 1.01369 1.21445 0.93438 0.97741 0.94992 1.20220 0.93813 0.95758 1.00818 1.18017 0.81006 0.87939 0.79772 1.90809 1.64457 1.23405 1.61138 1.47910 1.24800 1.07361 1.50957 1.19671 0.91032 0.84272 0.95440 1.21323 1.19494 1.16380 0.98655 0.90466 1.24841 0.96866 0.96571 0.94733 1.69892 1.42162 1.29766 1.11847 0.86916 0.82697 0.81313 0.79149 1.19965 1.21169 1.19114 1.21675 0.95995 0.84293 0.97452 1.22231 0.97475 1.02157 1.00654 1.22121 1.03720 1.00673 0.94835 1.21570 1.01359 0.91865 0.96301 1.20871 0.91522 1.00907 1.02534 1.17519 0.90704 0.86176 1.00233 1.91459 1.82263 1.56158 1.81894 0.90329 0.87955 0.88214 0.75017 0.81684 0.94853 0.94737 0.92667 0.88552 0.91230 0.91705 0.92685 0.92438 0.93181 0.90078 0.83092 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.39 36.01 0.37 -0.68 16 2 C 0.50 5.85 7.75 -10.98 -0.09 5.77 16 3 O -0.51 -8.66 14.23 5.55 0.08 -8.58 16 4 N -0.67 -6.99 5.31 -9.84 -0.05 -7.04 16 5 C 0.11 1.47 6.44 -83.64 -0.54 0.93 16 6 C -0.06 -0.93 8.28 -39.00 -0.32 -1.26 16 7 C -0.10 -1.74 5.36 -104.99 -0.56 -2.31 16 8 C 0.55 11.87 7.37 -12.38 -0.09 11.77 16 9 O -0.52 -13.77 16.44 5.31 0.09 -13.68 16 10 N -0.58 -11.99 2.39 -168.61 -0.40 -12.40 16 11 C 0.22 5.24 3.62 -5.19 -0.02 5.23 16 12 C -0.52 -14.75 8.38 -34.44 -0.29 -15.04 16 13 H 0.08 2.41 7.87 -52.49 -0.41 1.99 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 16 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 17 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 20 C 0.11 1.74 2.35 -67.93 -0.16 1.58 16 21 C -0.17 -2.18 8.60 37.16 0.32 -1.86 16 22 C -0.16 -2.62 8.47 37.16 0.31 -2.30 16 23 C -0.09 -1.19 7.32 -39.17 -0.29 -1.48 16 24 C -0.14 -1.51 10.00 -39.60 -0.40 -1.90 16 25 C 0.08 0.89 7.31 -39.12 -0.29 0.60 16 26 F -0.14 -1.46 16.79 2.25 0.04 -1.42 16 27 H 0.08 0.26 7.92 -51.93 -0.41 -0.15 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.41 2.81 8.28 -40.82 -0.34 2.47 16 31 H 0.17 3.25 5.67 -52.49 -0.30 2.96 16 32 H 0.03 0.76 5.49 -51.93 -0.29 0.48 16 33 H 0.03 0.91 6.93 -51.93 -0.36 0.55 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 35 H 0.10 1.32 3.84 -51.93 -0.20 1.12 16 36 H 0.07 1.02 6.67 -51.93 -0.35 0.68 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.65 7.25 -51.93 -0.38 0.28 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 42 H 0.15 1.73 4.50 -52.49 -0.24 1.50 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -36.78 352.88 -6.28 -43.06 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.33 Total: 3.68 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.13 Total: 1.03 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.32 Total: -46.36 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.17 Total: -22.26 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.78 -6.28 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522586041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.109 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds