Wall clock time and date at job start Tue Mar 31 2020 13:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00343 * 2 1 4 4 H 1.09004 * 109.46552 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47030 * 119.99439 * 3 2 1 6 6 C 1.50693 * 109.47733 * 295.00224 * 5 3 2 7 7 O 1.21280 * 119.99654 * 0.02562 * 6 5 3 8 8 N 1.34781 * 120.00575 * 179.97438 * 6 5 3 9 9 C 1.39467 * 120.00257 * 175.12286 * 8 6 5 10 10 C 1.38590 * 119.57821 * 185.20618 * 9 8 6 11 11 C 1.40813 * 118.79598 * 179.97438 * 10 9 8 12 12 C 1.41545 * 120.99513 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99580 * 149.43583 * 12 11 10 14 14 C 1.40028 * 120.00163 * 329.43003 * 12 11 10 15 15 N 1.30743 * 120.00034 * 167.74501 * 14 12 11 16 16 Si 1.86799 * 120.00061 * 347.74390 * 14 12 11 17 17 H 1.48504 * 109.47101 * 92.42618 * 16 14 12 18 18 H 1.48505 * 109.47298 * 212.42064 * 16 14 12 19 19 H 1.48498 * 109.47356 * 332.42601 * 16 14 12 20 20 C 1.41170 * 118.00594 * 0.02562 * 11 10 9 21 21 C 1.37588 * 119.01597 * 359.97438 * 20 11 10 22 22 N 1.32084 * 121.10854 * 359.75020 * 21 20 11 23 23 C 1.50693 * 109.47123 * 239.99945 * 3 2 1 24 24 C 1.38235 * 120.00448 * 299.72228 * 23 3 2 25 25 C 1.38227 * 120.00519 * 179.79029 * 24 23 3 26 26 C 1.38246 * 119.99769 * 0.44263 * 25 24 23 27 27 C 1.38235 * 119.99906 * 359.81243 * 26 25 24 28 28 C 1.38238 * 119.99891 * 359.97438 * 27 26 25 29 29 H 1.07998 * 119.99861 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99947 * 179.97438 * 1 2 3 31 31 H 1.08008 * 119.99806 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47007 * 55.00871 * 5 3 2 33 33 H 1.08997 * 109.47022 * 175.00028 * 5 3 2 34 34 H 0.96998 * 119.99113 * 355.12187 * 8 6 5 35 35 H 1.07996 * 120.60509 * 0.02562 * 10 9 8 36 36 H 0.97001 * 120.00384 * 179.97438 * 15 14 12 37 37 H 1.08004 * 120.49270 * 180.02562 * 20 11 10 38 38 H 1.08004 * 119.44663 * 179.97438 * 21 20 11 39 39 H 1.08002 * 119.99428 * 0.02562 * 24 23 3 40 40 H 1.07995 * 120.00630 * 180.27628 * 25 24 23 41 41 H 1.07992 * 119.99670 * 179.83256 * 26 25 24 42 42 H 1.07998 * 120.00109 * 179.97438 * 27 26 25 43 43 H 1.07998 * 119.99857 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 -0.0005 5 6 2.9430 1.3861 1.2493 6 6 2.0697 1.4300 2.4766 7 8 0.8626 1.3990 2.3633 8 7 2.6300 1.5027 3.7003 9 6 1.8236 1.6459 4.8291 10 6 2.4113 1.8284 6.0709 11 6 1.5815 1.9718 7.1995 12 6 2.1320 2.1599 8.4899 13 1 1.5925 2.7341 9.2286 14 6 3.3760 1.6017 8.8086 15 7 3.9955 1.9658 9.9009 16 14 4.1505 0.3366 7.6731 17 1 5.0428 1.0220 6.7039 18 1 4.9416 -0.6305 8.4758 19 1 3.0831 -0.3872 6.9371 20 6 0.1841 1.9210 7.0056 21 6 -0.3069 1.7358 5.7337 22 7 0.5057 1.6110 4.7000 23 6 2.9299 1.3848 -1.2304 24 6 3.9129 0.4371 -1.4463 25 6 4.7047 0.5078 -2.5771 26 6 4.5197 1.5315 -3.4876 27 6 3.5403 2.4822 -3.2691 28 6 2.7455 2.4090 -2.1404 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 3.5905 0.5104 1.2952 33 1 3.5540 2.2877 1.2057 34 1 3.5941 1.4553 3.7957 35 1 3.4861 1.8611 6.1711 36 1 4.8570 1.5788 10.1219 37 1 -0.4896 2.0268 7.8431 38 1 -1.3748 1.6955 5.5775 39 1 4.0596 -0.3607 -0.7333 40 1 5.4697 -0.2351 -2.7481 41 1 5.1401 1.5883 -4.3697 42 1 3.3960 3.2822 -3.9801 43 1 1.9800 3.1515 -1.9699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535424621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:01 Heat of formation + Delta-G solvation = 43.570636 kcal Electronic energy + Delta-G solvation = -25626.877604 eV Core-core repulsion = 22023.274206 eV Total energy + Delta-G solvation = -3603.603398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.16980 -39.40618 -38.09334 -35.67309 -34.30031 -33.77192 -31.48319 -31.32216 -31.10745 -30.09673 -28.52206 -26.02515 -24.86529 -22.88573 -22.39668 -21.81648 -21.27238 -19.86523 -19.28835 -17.76226 -17.47263 -16.81339 -15.99368 -15.54343 -15.48273 -15.36672 -14.86447 -14.63660 -14.48810 -14.08088 -13.75680 -13.55225 -13.39251 -13.31811 -13.06330 -12.94907 -12.72601 -12.56419 -11.91655 -11.74120 -11.58260 -11.41482 -11.06923 -10.99755 -10.85738 -10.71073 -10.67145 -10.05022 -9.86766 -9.59443 -9.40547 -9.11369 -9.06434 -8.87264 -8.24227 -7.87353 -7.26096 -7.05673 -4.75298 1.15140 1.20797 2.27954 2.51085 2.60887 2.97160 3.07406 3.21145 3.33068 3.42400 3.63416 3.86549 4.52770 4.58005 4.62246 4.79652 4.88140 4.92406 4.96447 5.08764 5.27457 5.32855 5.35376 5.40588 5.46139 5.61363 5.77037 5.80146 5.80573 5.94494 6.05934 6.27059 6.29561 6.31382 6.36462 6.38942 6.48538 6.54423 6.74449 6.83136 6.94360 6.96738 7.10557 7.24095 7.56930 7.73335 8.02230 8.19792 8.40607 8.63997 8.70585 9.43053 9.95984 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018893 B = 0.002893 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.675535 B = 9675.782337 C =10563.316804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.155 4.155 3 C -0.002 4.002 4 H 0.090 0.910 5 C -0.131 4.131 6 C 0.497 3.503 7 O -0.466 6.466 8 N -0.667 5.667 9 C 0.370 3.630 10 C -0.321 4.321 11 C 0.128 3.872 12 C -0.438 4.438 13 H 0.095 0.905 14 C 0.084 3.916 15 N -0.805 5.805 16 Si 0.918 3.082 17 H -0.271 1.271 18 H -0.291 1.291 19 H -0.245 1.245 20 C -0.271 4.271 21 C 0.127 3.873 22 N -0.552 5.552 23 C -0.068 4.068 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.406 0.594 35 H 0.108 0.892 36 H 0.287 0.713 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -2.584 -21.365 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.173 4.173 3 C -0.020 4.020 4 H 0.109 0.891 5 C -0.171 4.171 6 C 0.282 3.718 7 O -0.335 6.335 8 N -0.313 5.313 9 C 0.143 3.857 10 C -0.346 4.346 11 C 0.119 3.881 12 C -0.468 4.468 13 H 0.113 0.887 14 C -0.136 4.136 15 N -0.429 5.429 16 Si 0.745 3.255 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.168 1.168 20 C -0.295 4.295 21 C -0.025 4.025 22 N -0.272 5.272 23 C -0.068 4.068 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.241 0.759 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.548 -2.697 -22.153 22.461 hybrid contribution 1.534 -0.416 0.737 1.752 sum 4.081 -3.113 -21.416 22.023 Atomic orbital electron populations 1.23704 0.95779 1.01550 0.97886 1.22507 0.95951 0.96394 1.02490 1.19053 0.95205 0.97941 0.89830 0.89145 1.21738 0.98633 1.04404 0.92372 1.20632 0.89605 0.77622 0.83965 1.90792 1.13864 1.43307 1.85487 1.43602 1.09774 1.72620 1.05327 1.18019 0.88873 0.94475 0.84380 1.21251 0.99114 1.22316 0.91930 1.17709 0.91395 0.86439 0.92530 1.19502 1.01632 1.28694 0.97017 0.88682 1.26179 0.95592 0.96425 0.95379 1.69610 1.13881 1.36097 1.23322 0.86227 0.79501 0.80274 0.79490 1.19726 1.21896 1.16833 1.21925 0.95625 1.14550 0.97369 1.21916 0.97694 0.94716 0.88146 1.67336 1.01757 1.24552 1.33524 1.19842 0.95966 0.94970 0.95980 1.21029 0.95594 0.98811 0.97698 1.21139 0.99552 0.98467 0.94616 1.21132 0.98610 0.95343 0.99490 1.21134 0.96027 0.99026 0.97536 1.21111 0.99707 0.98117 0.94342 0.88390 0.89023 0.87988 0.88987 0.88755 0.75923 0.87477 0.90215 0.87201 0.85295 0.86084 0.86208 0.86348 0.86183 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 13.22 29.02 0.38 -1.61 16 2 C -0.16 -1.93 7.41 -36.03 -0.27 -2.19 16 3 C 0.00 -0.02 1.99 -92.93 -0.18 -0.20 16 4 H 0.09 1.16 7.33 -51.93 -0.38 0.78 16 5 C -0.13 -1.54 4.90 -27.89 -0.14 -1.67 16 6 C 0.50 8.38 7.54 -10.99 -0.08 8.29 16 7 O -0.47 -9.43 12.42 5.56 0.07 -9.36 16 8 N -0.67 -12.05 5.39 -11.50 -0.06 -12.11 16 9 C 0.37 8.37 7.42 -154.71 -1.15 7.22 16 10 C -0.32 -7.58 6.94 -38.48 -0.27 -7.85 16 11 C 0.13 3.21 5.16 -106.55 -0.55 2.66 16 12 C -0.44 -11.53 9.67 -37.65 -0.36 -11.90 16 13 H 0.10 2.61 8.06 -52.48 -0.42 2.19 16 14 C 0.08 2.14 5.48 -17.34 -0.10 2.04 16 15 N -0.80 -20.75 13.92 55.55 0.77 -19.98 16 16 Si 0.92 20.08 24.43 -169.99 -4.15 15.93 16 17 H -0.27 -5.54 6.67 56.52 0.38 -5.16 16 18 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.24 -5.62 6.65 56.52 0.38 -5.25 16 20 C -0.27 -6.31 9.90 -38.71 -0.38 -6.69 16 21 C 0.13 2.86 11.15 -17.68 -0.20 2.66 16 22 N -0.55 -13.15 7.85 -12.53 -0.10 -13.25 16 23 C -0.07 -0.70 4.77 -104.63 -0.50 -1.20 16 24 C -0.11 -1.07 8.87 -39.59 -0.35 -1.42 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 28 C -0.11 -1.12 9.67 -39.58 -0.38 -1.50 16 29 H 0.10 1.34 7.83 -52.49 -0.41 0.93 16 30 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.10 1.16 8.05 -52.48 -0.42 0.73 16 32 H 0.09 0.90 7.56 -51.93 -0.39 0.51 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.41 5.93 8.70 -40.82 -0.36 5.58 16 35 H 0.11 2.43 4.43 -52.49 -0.23 2.20 16 36 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 37 H 0.11 2.36 8.06 -52.48 -0.42 1.93 16 38 H 0.13 2.50 8.06 -52.48 -0.42 2.07 16 39 H 0.12 1.00 7.62 -52.49 -0.40 0.60 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 1.07 7.95 -52.49 -0.42 0.65 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -31.07 360.97 -9.33 -40.40 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.58 Total: 10.60 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -5.72 Total: -17.67 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.61 Total: -45.33 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.15 Total: 15.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.07 -9.33 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535424621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.970 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds