Wall clock time and date at job start Tue Mar 31 2020 13:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 N 1.46497 * 109.46722 * 119.99911 * 2 1 3 5 5 C 1.46508 * 120.00195 * 299.99696 * 4 2 1 6 6 C 1.50701 * 109.46784 * 270.00490 * 5 4 2 7 7 H 1.07990 * 120.00481 * 359.97438 * 6 5 4 8 8 C 1.37887 * 119.99121 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00221 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99467 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47189 * 59.99782 * 10 8 6 12 12 H 1.48500 * 109.46837 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46788 * 300.00118 * 10 8 6 14 14 C 1.34771 * 120.00044 * 120.00185 * 4 2 1 15 15 O 1.21283 * 120.00306 * 179.97438 * 14 4 2 16 16 C 1.50697 * 120.00035 * 359.97438 * 14 4 2 17 17 N 1.46502 * 109.47479 * 179.97438 * 16 14 4 18 18 C 1.34773 * 120.00061 * 179.97438 * 17 16 14 19 19 O 1.21568 * 120.00167 * 0.02562 * 18 17 16 20 20 C 1.47733 * 119.99821 * 180.02562 * 18 17 16 21 21 C 1.39646 * 120.11740 * 0.27389 * 20 18 17 22 22 C 1.37838 * 119.88070 * 180.23285 * 21 20 18 23 23 C 1.38658 * 120.11710 * 359.49180 * 22 21 20 24 24 F 1.35093 * 119.88405 * 180.27876 * 23 22 21 25 25 C 1.38657 * 120.23712 * 0.25791 * 23 22 21 26 26 C 1.37840 * 120.11828 * 359.97438 * 25 23 22 27 27 H 1.09003 * 109.47503 * 299.99904 * 1 2 3 28 28 H 1.09002 * 109.47296 * 60.00088 * 1 2 3 29 29 H 1.08998 * 109.47366 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46912 * 240.00056 * 2 1 3 31 31 H 1.09002 * 109.47015 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46776 * 299.99599 * 3 2 1 33 33 H 1.09003 * 109.47377 * 60.00014 * 3 2 1 34 34 H 1.08999 * 109.46783 * 30.00244 * 5 4 2 35 35 H 1.08998 * 109.47068 * 150.00418 * 5 4 2 36 36 H 0.97000 * 119.99578 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47187 * 60.00285 * 16 14 4 38 38 H 1.09000 * 109.47096 * 300.00003 * 16 14 4 39 39 H 0.97006 * 119.99574 * 0.02562 * 17 16 14 40 40 H 1.08004 * 120.06390 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.94593 * 179.77526 * 22 21 20 42 42 H 1.08003 * 119.94100 * 180.02562 * 25 23 22 43 43 H 1.08004 * 120.05787 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7031 0.8019 2.9830 7 1 3.5430 1.0358 2.3458 8 6 2.5809 1.4109 4.2140 9 7 1.5578 1.1265 4.9897 10 14 3.8682 2.6410 4.7792 11 1 3.9233 3.7749 3.8218 12 1 3.5094 3.1483 6.1280 13 1 5.1953 1.9772 4.8373 14 6 2.7930 -1.7864 1.0726 15 8 3.1976 -2.3579 2.0629 16 6 3.1567 -2.3016 -0.2961 17 7 3.9996 -3.4923 -0.1616 18 6 4.4482 -4.1281 -1.2621 19 8 4.1538 -3.7133 -2.3662 20 6 5.2976 -5.3292 -1.1265 21 6 5.6325 -5.8111 0.1407 22 6 6.4294 -6.9293 0.2616 23 6 6.8895 -7.5816 -0.8722 24 9 7.6656 -8.6804 -0.7482 25 6 6.5557 -7.1103 -2.1328 26 6 5.7634 -5.9902 -2.2650 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9562 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.6903 0.2975 2.4844 35 1 1.6237 -1.0225 3.2292 36 1 1.4718 1.5552 5.8556 37 1 3.7016 -1.5310 -0.8414 38 1 2.2482 -2.5587 -0.8407 39 1 4.2341 -3.8235 0.7194 40 1 5.2706 -5.3067 1.0245 41 1 6.6920 -7.3008 1.2411 42 1 6.9164 -7.6223 -3.0126 43 1 5.5036 -5.6242 -3.2473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545188740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:11 Heat of formation + Delta-G solvation = -92.307931 kcal Electronic energy + Delta-G solvation = -26579.915746 eV Core-core repulsion = 22539.650986 eV Total energy + Delta-G solvation = -4040.264760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.29565 -40.44627 -39.35397 -38.18400 -36.21964 -34.50112 -32.88919 -31.57912 -31.23007 -30.95670 -28.70686 -26.84546 -26.43536 -23.91251 -23.31422 -22.63982 -21.40330 -20.64728 -19.02017 -18.07097 -17.66003 -16.80882 -16.55176 -16.33888 -15.99564 -15.71924 -15.59455 -15.32760 -14.86535 -14.44701 -14.35480 -14.02392 -13.69144 -13.53289 -13.48945 -13.11962 -13.02358 -12.89970 -12.52338 -12.37525 -12.01975 -11.74374 -11.62121 -11.39844 -11.26642 -11.00029 -10.90646 -10.64417 -10.44175 -10.16852 -10.09358 -9.64073 -9.54866 -9.29091 -9.16157 -9.01640 -8.47300 -7.80982 -6.09231 -4.12954 0.36576 0.85029 2.54311 2.92670 3.16041 3.28263 3.33226 3.36433 3.47328 3.80131 3.81558 4.31603 4.40064 4.47305 4.51623 4.80737 4.84261 4.94075 5.18405 5.25457 5.38387 5.42232 5.50092 5.53153 5.53681 5.59994 5.69448 5.78873 5.91784 5.96647 6.07915 6.16872 6.28519 6.32316 6.41496 6.54197 6.90700 6.99171 7.35875 7.39804 7.46246 7.86457 8.05071 8.17552 8.27552 8.75216 8.93280 9.51223 10.98962 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.002778 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.084185 B =10077.358071 C =11203.878552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.584 5.584 5 C 0.246 3.754 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.500 3.500 15 O -0.542 6.542 16 C 0.098 3.902 17 N -0.707 5.707 18 C 0.560 3.440 19 O -0.541 6.541 20 C -0.142 4.142 21 C -0.054 4.054 22 C -0.160 4.160 23 C 0.121 3.879 24 F -0.136 7.136 25 C -0.164 4.164 26 C -0.031 4.031 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.412 0.588 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -12.276 -13.790 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.315 5.315 5 C 0.127 3.873 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.285 3.715 15 O -0.420 6.420 16 C -0.029 4.029 17 N -0.362 5.362 18 C 0.347 3.653 19 O -0.420 6.420 20 C -0.146 4.146 21 C -0.072 4.072 22 C -0.178 4.178 23 C 0.102 3.898 24 F -0.114 7.114 25 C -0.183 4.183 26 C -0.050 4.050 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.251 0.749 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.888 -12.223 -13.814 19.082 hybrid contribution 0.939 0.455 0.893 1.373 sum 5.827 -11.768 -12.922 18.423 Atomic orbital electron populations 1.22155 0.95235 1.01936 1.02670 1.21093 0.94456 0.94435 0.87578 1.22138 1.01427 0.95426 1.02522 1.48311 1.48283 1.25747 1.09201 1.19301 0.96111 0.95079 0.76784 1.21372 1.08938 1.23606 1.02185 0.92365 1.24919 0.95745 0.97078 0.96311 1.69913 1.29419 1.43260 1.10772 0.86599 0.81978 0.81285 0.77806 1.20223 1.21236 1.20247 1.20136 0.79813 0.81638 0.89893 1.90656 1.53854 1.58373 1.39131 1.21238 0.96264 0.88449 0.96977 1.45668 1.51590 1.28902 1.10016 1.18073 0.79847 0.83084 0.84250 1.90774 1.58632 1.66974 1.25600 1.20004 1.02497 0.97824 0.94242 1.21333 0.94396 0.94371 0.97149 1.21127 1.00841 0.97388 0.98484 1.17996 0.92482 0.84745 0.94595 1.91522 1.72227 1.50821 1.96870 1.21137 1.01903 0.98803 0.96410 1.21139 0.92529 0.92141 0.99144 0.91189 0.92023 0.92829 0.90540 0.92669 0.93011 0.89943 0.94483 0.93934 0.92661 0.88645 0.88764 0.74903 0.83994 0.83859 0.83979 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.17 37.16 0.34 -1.90 16 2 C 0.13 1.98 3.17 -67.93 -0.22 1.77 16 3 C -0.16 -2.48 8.47 37.16 0.31 -2.16 16 4 N -0.58 -11.43 2.39 -167.47 -0.40 -11.83 16 5 C 0.25 6.00 4.59 -5.19 -0.02 5.98 16 6 C -0.52 -13.89 7.83 -34.44 -0.27 -14.16 16 7 H 0.06 1.55 7.63 -52.49 -0.40 1.15 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 10 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.50 9.54 7.74 -10.99 -0.09 9.45 16 15 O -0.54 -12.19 15.25 5.55 0.08 -12.10 16 16 C 0.10 1.45 4.46 -5.19 -0.02 1.43 16 17 N -0.71 -9.85 5.48 -62.47 -0.34 -10.20 16 18 C 0.56 7.64 7.77 -12.38 -0.10 7.54 16 19 O -0.54 -8.67 16.34 5.31 0.09 -8.58 16 20 C -0.14 -1.58 5.87 -104.97 -0.62 -2.20 16 21 C -0.05 -0.52 9.54 -39.20 -0.37 -0.89 16 22 C -0.16 -1.41 10.01 -39.57 -0.40 -1.80 16 23 C 0.12 1.12 7.31 -39.27 -0.29 0.83 16 24 F -0.14 -1.31 17.26 2.25 0.04 -1.27 16 25 C -0.16 -1.38 10.01 -39.57 -0.40 -1.78 16 26 C -0.03 -0.30 9.59 -39.20 -0.38 -0.67 16 27 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.99 5.77 -51.93 -0.30 0.69 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 34 H 0.04 0.92 6.43 -51.93 -0.33 0.58 16 35 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.10 1.35 7.79 -51.93 -0.40 0.95 16 38 H 0.09 1.27 7.79 -51.93 -0.40 0.86 16 39 H 0.41 5.58 5.47 -40.82 -0.22 5.36 16 40 H 0.14 1.24 6.40 -52.48 -0.34 0.91 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.15 1.33 7.65 -52.48 -0.40 0.93 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -31.88 364.77 -7.48 -39.36 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.56 Total: 4.84 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.60 Total: 3.02 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.01 Total: -46.92 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.17 Total: -20.69 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.88 -7.48 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545188740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.944 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds