Wall clock time and date at job start Tue Mar 31 2020 13:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47411 * 2 1 4 4 H 1.09003 * 109.47329 * 179.07663 * 3 2 1 5 5 C 1.50704 * 109.47227 * 299.07499 * 3 2 1 6 6 H 1.08000 * 119.99894 * 119.99958 * 5 3 2 7 7 C 1.37869 * 120.00097 * 299.99956 * 5 3 2 8 8 N 1.31516 * 120.00433 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00216 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47095 * 89.99652 * 9 7 5 11 11 H 1.48500 * 109.47392 * 210.00045 * 9 7 5 12 12 H 1.48500 * 109.46790 * 330.00457 * 9 7 5 13 13 N 1.46903 * 109.47100 * 59.07738 * 3 2 1 14 14 C 1.46894 * 111.00125 * 85.73597 * 13 3 2 15 15 H 1.08999 * 109.47472 * 326.97308 * 14 13 3 16 16 C 1.53008 * 109.46957 * 86.97110 * 14 13 3 17 17 C 1.50701 * 109.46967 * 206.96953 * 14 13 3 18 18 O 1.21279 * 120.00193 * 359.97438 * 17 14 13 19 19 N 1.34782 * 119.99821 * 180.02562 * 17 14 13 20 20 C 1.47064 * 120.86501 * 180.02562 * 19 17 14 21 21 C 1.53181 * 108.57709 * 115.09485 * 20 19 17 22 22 C 1.51391 * 109.07218 * 45.54751 * 21 20 19 23 23 S 1.75908 * 125.07028 * 161.97255 * 22 21 20 24 24 C 1.75714 * 91.11384 * 179.58910 * 23 22 21 25 25 C 1.32924 * 109.59566 * 0.07761 * 24 23 22 26 26 C 1.34651 * 125.09213 * 341.74165 * 22 21 20 27 27 C 1.46975 * 120.86309 * 359.97438 * 19 17 14 28 28 H 1.09002 * 109.47088 * 296.21102 * 1 2 3 29 29 H 1.09008 * 109.47282 * 56.21235 * 1 2 3 30 30 H 1.09003 * 109.47185 * 176.20759 * 1 2 3 31 31 H 1.08999 * 109.47076 * 239.99976 * 2 1 3 32 32 H 1.09000 * 109.47289 * 120.00296 * 2 1 3 33 33 H 0.96998 * 120.00394 * 179.97438 * 8 7 5 34 34 H 1.00909 * 110.99893 * 209.69421 * 13 3 2 35 35 H 1.08999 * 109.47300 * 300.00152 * 16 14 13 36 36 H 1.08999 * 109.46868 * 59.99828 * 16 14 13 37 37 H 1.08993 * 109.47056 * 179.97438 * 16 14 13 38 38 H 1.09000 * 109.62202 * 355.36308 * 20 19 17 39 39 H 1.09004 * 109.61560 * 234.82468 * 20 19 17 40 40 H 1.09000 * 109.54071 * 285.66685 * 21 20 19 41 41 H 1.09002 * 109.60342 * 165.46359 * 21 20 19 42 42 H 1.08001 * 125.20287 * 180.10360 * 24 23 22 43 43 H 1.07996 * 122.17570 * 180.09802 * 25 24 23 44 44 H 1.08997 * 109.80040 * 105.56531 * 27 19 17 45 45 H 1.08995 * 109.79558 * 344.69757 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4424 0.0166 5 6 1.5565 2.1462 -1.2418 6 1 0.9342 3.0248 -1.1569 7 6 1.9086 1.6685 -2.4862 8 7 1.4862 2.2823 -3.5700 9 14 2.9854 0.1492 -2.6332 10 1 2.1281 -1.0622 -2.6849 11 1 3.7961 0.2352 -3.8744 12 1 3.8882 0.0667 -1.4570 13 7 1.5322 2.1413 1.1882 14 6 2.4078 1.9159 2.3459 15 1 2.8411 0.9176 2.2848 16 6 3.5276 2.9585 2.3491 17 6 1.6041 2.0380 3.6148 18 8 0.4188 2.2886 3.5601 19 7 2.2029 1.8696 4.8105 20 6 1.4368 1.9839 6.0607 21 6 1.4247 0.6172 6.7524 22 6 2.8239 0.0394 6.7306 23 16 3.3964 -1.2614 7.7671 24 6 4.9862 -1.2023 7.0211 25 6 5.0044 -0.2591 6.0847 26 6 3.8147 0.4413 5.9122 27 6 3.6382 1.5659 4.8989 28 1 -0.3633 0.4539 0.9220 29 1 -0.3634 0.5715 -0.8541 30 1 -0.3634 -1.0254 -0.0680 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7342 1.9465 -4.4455 34 1 1.4192 3.1275 1.0068 35 1 4.1089 2.8703 1.4312 36 1 3.0943 3.9568 2.4101 37 1 4.1770 2.7915 3.2083 38 1 0.4148 2.2901 5.8370 39 1 1.9077 2.7199 6.7124 40 1 0.7455 -0.0524 6.2247 41 1 1.0940 0.7327 7.7846 42 1 5.8208 -1.8357 7.2831 43 1 5.8853 -0.0504 5.4958 44 1 4.1829 2.4499 5.2304 45 1 4.0086 1.2466 3.9248 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565667253.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:06 Heat of formation + Delta-G solvation = 15.183782 kcal Electronic energy + Delta-G solvation = -25823.056201 eV Core-core repulsion = 22353.665807 eV Total energy + Delta-G solvation = -3469.390393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40244 -38.42181 -36.65768 -35.39696 -33.73045 -32.27979 -31.47493 -29.74136 -28.72411 -26.44236 -26.14990 -24.18196 -23.51668 -23.09451 -21.96016 -19.59164 -19.03804 -18.50324 -17.58305 -16.79825 -16.25477 -16.12403 -15.45343 -15.28809 -14.99767 -14.46215 -14.17722 -13.73636 -13.63609 -13.38889 -13.24642 -13.13259 -13.05469 -12.73110 -12.62221 -12.30551 -12.14304 -12.00834 -11.90501 -11.58863 -11.37844 -11.19830 -11.01382 -10.92556 -10.60340 -10.51942 -10.22147 -10.03279 -9.38687 -9.28284 -8.96200 -8.83828 -8.74035 -8.57809 -8.54224 -7.45927 -6.09529 -4.08428 0.74069 1.35495 1.73305 2.39198 2.90229 2.95745 3.26822 3.34401 3.37075 4.37871 4.39045 4.46460 4.69631 4.76170 4.97050 4.99605 5.02578 5.10603 5.19824 5.23512 5.29778 5.34384 5.41018 5.43682 5.65857 5.73911 5.77449 5.81734 5.96745 6.04117 6.13281 6.21496 6.25221 6.31179 6.43322 6.50756 6.71687 6.93318 7.16315 7.23826 7.41472 7.54631 7.61862 7.89526 8.31628 8.46960 8.60497 8.96133 9.52399 11.03284 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018503 B = 0.003425 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.928010 B = 8172.446487 C = 8677.599065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.188 3.812 4 H 0.002 0.998 5 C -0.512 4.512 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.651 5.651 14 C 0.068 3.932 15 H 0.095 0.905 16 C -0.188 4.188 17 C 0.526 3.474 18 O -0.510 6.510 19 N -0.623 5.623 20 C 0.119 3.881 21 C -0.065 4.065 22 C -0.163 4.163 23 S 0.090 5.910 24 C -0.215 4.215 25 C -0.121 4.121 26 C -0.128 4.128 27 C 0.172 3.828 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.018 0.982 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.347 0.653 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.165 0.835 43 H 0.141 0.859 44 H 0.082 0.918 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 -4.370 23.745 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.079 3.921 4 H 0.020 0.980 5 C -0.550 4.550 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.282 5.282 14 C -0.047 4.047 15 H 0.112 0.888 16 C -0.247 4.247 17 C 0.313 3.687 18 O -0.383 6.383 19 N -0.359 5.359 20 C -0.006 4.006 21 C -0.106 4.106 22 C -0.281 4.281 23 S 0.356 5.644 24 C -0.350 4.350 25 C -0.152 4.152 26 C -0.141 4.141 27 C 0.047 3.953 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.182 0.818 43 H 0.159 0.841 44 H 0.100 0.900 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.356 -5.635 24.799 26.213 hybrid contribution 2.253 0.193 -1.437 2.679 sum 8.610 -5.442 23.362 25.486 Atomic orbital electron populations 1.21472 0.95349 0.98219 1.03283 1.21766 0.97686 0.98066 0.97541 1.19610 0.92752 0.91276 0.88423 0.98036 1.20990 1.32460 1.13322 0.88258 0.90202 1.24877 0.95535 0.96681 0.95710 1.69884 1.45342 1.40453 0.97803 0.86881 0.80805 0.83944 0.76734 1.20391 1.22580 1.19457 1.60171 1.47395 1.17187 1.03463 1.21450 0.91897 1.00235 0.91080 0.88758 1.22730 0.99061 0.99776 1.03133 1.21006 0.88186 0.75422 0.84048 1.90667 1.15419 1.46008 1.86196 1.48138 1.09061 1.72633 1.06050 1.21482 0.98873 0.95242 0.84965 1.20700 0.90693 0.97426 1.01733 1.24716 1.00096 1.01815 1.01426 1.84197 1.05868 1.35327 1.39029 1.25328 1.00779 1.05463 1.03471 1.19928 0.98624 0.96833 0.99767 1.19908 0.93236 1.00771 1.00157 1.20768 0.82067 0.94439 0.98067 0.92282 0.91379 0.96257 0.94064 0.95432 0.92598 0.83301 0.90902 0.91884 0.91817 0.87995 0.91082 0.89611 0.89557 0.81782 0.84090 0.89979 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.52 37.16 0.35 -2.45 16 2 C -0.11 -2.53 5.27 -26.74 -0.14 -2.67 16 3 C 0.19 4.31 1.70 -68.87 -0.12 4.19 16 4 H 0.00 0.05 6.32 -51.93 -0.33 -0.28 16 5 C -0.51 -13.88 7.89 -34.44 -0.27 -14.16 16 6 H 0.08 2.37 7.85 -52.49 -0.41 1.96 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 9 Si 0.89 21.72 24.38 -169.99 -4.14 17.57 16 10 H -0.28 -6.74 6.86 56.52 0.39 -6.35 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.65 -13.27 4.82 -102.17 -0.49 -13.77 16 14 C 0.07 1.10 1.99 -68.86 -0.14 0.97 16 15 H 0.09 1.53 6.60 -51.93 -0.34 1.18 16 16 C -0.19 -2.50 8.70 37.16 0.32 -2.18 16 17 C 0.53 8.48 7.17 -10.98 -0.08 8.40 16 18 O -0.51 -10.15 15.86 5.56 0.09 -10.06 16 19 N -0.62 -7.71 2.92 -173.10 -0.51 -8.22 16 20 C 0.12 1.26 6.40 -3.64 -0.02 1.23 16 21 C -0.07 -0.63 6.43 -27.45 -0.18 -0.80 16 22 C -0.16 -1.67 6.39 -35.24 -0.23 -1.90 16 23 S 0.09 0.80 23.31 -107.50 -2.51 -1.70 16 24 C -0.22 -1.80 11.20 28.90 0.32 -1.47 16 25 C -0.12 -1.07 10.00 -41.09 -0.41 -1.48 16 26 C -0.13 -1.30 5.86 -104.71 -0.61 -1.91 16 27 C 0.17 1.71 4.90 -4.09 -0.02 1.69 16 28 H 0.06 1.32 7.70 -51.93 -0.40 0.92 16 29 H 0.07 1.67 7.12 -51.92 -0.37 1.30 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.97 3.26 -51.93 -0.17 0.80 16 32 H 0.03 0.56 7.52 -51.93 -0.39 0.17 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.35 7.26 7.91 -39.29 -0.31 6.95 16 35 H 0.07 1.04 7.58 -51.93 -0.39 0.65 16 36 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 37 H 0.06 0.65 4.83 -51.93 -0.25 0.40 16 38 H 0.10 1.21 7.02 -51.93 -0.36 0.84 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 45 H 0.10 1.02 5.09 -51.93 -0.26 0.75 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -31.93 356.42 -9.27 -41.20 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.55 Total: 6.30 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -1.31 Total: -10.54 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.22 Total: -48.14 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.57 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.93 -9.27 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565667253.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.384 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds