Wall clock time and date at job start Tue Mar 31 2020 13:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47177 * 2 1 4 4 H 1.09006 * 109.47495 * 175.06571 * 3 2 1 5 5 C 1.50701 * 109.47277 * 55.06260 * 3 2 1 6 6 H 1.07998 * 120.00390 * 245.72907 * 5 3 2 7 7 C 1.37874 * 119.99727 * 65.73294 * 5 3 2 8 8 N 1.31512 * 120.00245 * 5.24171 * 7 5 3 9 9 Si 1.86805 * 120.00064 * 185.52238 * 7 5 3 10 10 H 1.48508 * 109.46934 * 269.72546 * 9 7 5 11 11 H 1.48501 * 109.47108 * 29.72003 * 9 7 5 12 12 H 1.48493 * 109.47380 * 149.72184 * 9 7 5 13 13 N 1.46900 * 109.47234 * 295.06574 * 3 2 1 14 14 C 1.46907 * 110.99822 * 279.78188 * 13 3 2 15 15 H 1.08997 * 109.46633 * 39.81021 * 14 13 3 16 16 C 1.52990 * 109.47287 * 279.80194 * 14 13 3 17 17 C 1.50703 * 109.46821 * 159.80073 * 14 13 3 18 18 O 1.21281 * 120.00144 * 24.96372 * 17 14 13 19 19 N 1.34777 * 119.99793 * 204.95618 * 17 14 13 20 20 C 1.47069 * 120.86771 * 184.92106 * 19 17 14 21 21 C 1.53193 * 108.57015 * 115.10744 * 20 19 17 22 22 C 1.51389 * 109.07542 * 45.53418 * 21 20 19 23 23 S 1.75901 * 125.06731 * 161.79267 * 22 21 20 24 24 C 1.75718 * 91.11576 * 179.71204 * 23 22 21 25 25 C 1.32921 * 109.58964 * 0.12173 * 24 23 22 26 26 C 1.34655 * 125.09577 * 341.82125 * 22 21 20 27 27 C 1.46966 * 120.86996 * 4.64617 * 19 17 14 28 28 H 1.09005 * 109.46811 * 65.01092 * 1 2 3 29 29 H 1.08996 * 109.46983 * 185.00665 * 1 2 3 30 30 H 1.08999 * 109.47073 * 305.01117 * 1 2 3 31 31 H 1.09000 * 109.47502 * 239.99553 * 2 1 3 32 32 H 1.09003 * 109.47179 * 119.99978 * 2 1 3 33 33 H 0.97001 * 120.00213 * 355.43962 * 8 7 5 34 34 H 1.00898 * 111.00505 * 43.73236 * 13 3 2 35 35 H 1.08999 * 109.47409 * 305.01381 * 16 14 13 36 36 H 1.09002 * 109.47181 * 65.01620 * 16 14 13 37 37 H 1.09004 * 109.47395 * 185.01138 * 16 14 13 38 38 H 1.08993 * 109.62284 * 234.83171 * 20 19 17 39 39 H 1.09000 * 109.62193 * 355.38359 * 20 19 17 40 40 H 1.09008 * 109.53485 * 165.41501 * 21 20 19 41 41 H 1.09004 * 109.53529 * 285.57365 * 21 20 19 42 42 H 1.08001 * 125.20293 * 180.10160 * 24 23 22 43 43 H 1.07996 * 122.17650 * 180.12171 * 25 24 23 44 44 H 1.08998 * 109.80410 * 344.68473 * 27 19 17 45 45 H 1.09002 * 109.80163 * 105.54446 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1265 1.4437 0.0884 5 6 1.4403 2.1873 1.1647 6 1 0.7565 3.0045 0.9888 7 6 1.7648 1.8256 2.4550 8 7 2.6747 0.9006 2.6696 9 14 0.9064 2.6438 3.8984 10 1 1.6730 3.8461 4.3133 11 1 -0.4651 3.0460 3.4953 12 1 0.8289 1.6898 5.0337 13 7 1.6501 2.0997 -1.2545 14 6 2.5603 1.7310 -2.3471 15 1 2.8120 0.6734 -2.2689 16 6 3.8375 2.5678 -2.2512 17 6 1.8877 1.9906 -3.6705 18 8 1.0050 2.8185 -3.7500 19 7 2.2674 1.3030 -4.7657 20 6 1.7008 1.6150 -6.0865 21 6 2.8229 2.1412 -6.9868 22 6 4.0374 1.2500 -6.8359 23 16 5.3804 1.1714 -7.9692 24 6 6.1909 -0.0322 -6.9782 25 6 5.4502 -0.3002 -5.9075 26 6 4.2508 0.3987 -5.8146 27 6 3.2628 0.2258 -4.6723 28 1 -0.3633 0.4342 -0.9315 29 1 -0.3633 -1.0237 0.0897 30 1 -0.3633 0.5896 0.8417 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.0698 0.4260 1.9214 34 1 0.6934 1.8852 -1.4931 35 1 3.5783 3.6265 -2.2399 36 1 4.3700 2.3143 -1.3346 37 1 4.4742 2.3588 -3.1109 38 1 1.2734 0.7127 -6.5238 39 1 0.9275 2.3762 -5.9826 40 1 2.4914 2.1328 -8.0252 41 1 3.0780 3.1597 -6.6938 42 1 7.1448 -0.4852 -7.2047 43 1 5.7595 -1.0137 -5.1582 44 1 3.7870 0.2890 -3.7187 45 1 2.7688 -0.7420 -4.7593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565667254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:11 Heat of formation + Delta-G solvation = -0.197237 kcal Electronic energy + Delta-G solvation = -25751.841845 eV Core-core repulsion = 22281.784480 eV Total energy + Delta-G solvation = -3470.057364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46204 -38.53506 -36.77708 -35.47605 -33.63367 -32.33084 -31.08469 -29.75534 -28.66048 -26.30802 -25.66428 -24.32473 -23.70334 -23.21797 -21.79707 -19.60934 -18.97898 -18.46599 -17.70720 -16.93487 -16.42800 -16.16620 -15.60857 -15.11731 -14.93472 -14.30196 -14.11362 -13.72823 -13.55010 -13.47587 -13.28953 -13.13002 -12.91624 -12.79866 -12.52007 -12.07900 -12.03198 -11.97124 -11.71318 -11.45602 -11.44419 -11.28480 -11.04808 -11.00405 -10.72849 -10.32142 -10.11320 -10.07116 -9.86742 -9.40668 -8.88139 -8.79968 -8.63023 -8.55370 -8.21270 -7.35897 -6.28312 -3.97536 0.72070 1.33585 1.71411 2.37627 2.75428 2.87720 3.48295 3.51199 3.67144 4.35249 4.45848 4.54820 4.67194 4.71740 4.96431 4.97767 5.01690 5.09823 5.20204 5.28707 5.40842 5.41365 5.50723 5.60557 5.63267 5.70198 5.77471 5.98910 6.00523 6.08293 6.10318 6.21222 6.22118 6.29603 6.36328 6.59649 6.65678 6.94965 7.00156 7.21813 7.29906 7.33004 7.88723 8.24753 8.27450 8.46455 8.67623 8.94807 9.70220 11.08069 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.003018 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.549500 B = 9274.463556 C = 9670.825178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.031 0.969 5 C -0.568 4.568 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.655 5.655 14 C 0.069 3.931 15 H 0.052 0.948 16 C -0.131 4.131 17 C 0.521 3.479 18 O -0.520 6.520 19 N -0.619 5.619 20 C 0.117 3.883 21 C -0.064 4.064 22 C -0.166 4.166 23 S 0.091 5.909 24 C -0.214 4.214 25 C -0.121 4.121 26 C -0.123 4.123 27 C 0.170 3.830 28 H 0.032 0.968 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.018 0.982 32 H 0.069 0.931 33 H 0.268 0.732 34 H 0.337 0.663 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.165 0.835 43 H 0.142 0.858 44 H 0.103 0.897 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -4.027 -21.633 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.096 3.904 4 H 0.048 0.952 5 C -0.607 4.607 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.288 5.288 14 C -0.045 4.045 15 H 0.070 0.930 16 C -0.189 4.189 17 C 0.310 3.690 18 O -0.394 6.394 19 N -0.354 5.354 20 C -0.008 4.008 21 C -0.105 4.105 22 C -0.283 4.283 23 S 0.357 5.643 24 C -0.349 4.349 25 C -0.151 4.151 26 C -0.136 4.136 27 C 0.045 3.955 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.157 0.843 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.183 0.817 43 H 0.160 0.840 44 H 0.121 0.879 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.370 -2.174 -21.246 22.021 hybrid contribution -0.210 -1.950 -0.709 2.085 sum 5.160 -4.124 -21.955 22.927 Atomic orbital electron populations 1.21599 0.96691 0.99146 1.01540 1.22289 0.96307 1.01481 0.99317 1.19433 0.95855 0.88278 0.86882 0.95158 1.21818 1.29912 1.18062 0.90865 0.92507 1.25698 0.95820 0.97057 0.99958 1.70792 1.24884 1.24416 1.35492 0.83535 0.75644 0.75670 0.75337 1.21583 1.21451 1.21276 1.60745 1.04748 1.62102 1.01197 1.21509 0.95627 0.98393 0.88929 0.93040 1.21695 0.94609 1.01152 1.01442 1.21069 0.82431 0.79988 0.85528 1.90677 1.30197 1.33370 1.85174 1.48123 1.43094 1.36419 1.07800 1.21527 0.95398 1.01751 0.82084 1.20690 0.91090 0.97897 1.00775 1.24688 1.00905 1.03962 0.98751 1.84181 1.13695 1.40531 1.25896 1.25334 1.05037 1.04644 0.99870 1.19933 0.93964 1.01992 0.99228 1.19754 0.96990 0.99180 0.97692 1.20568 0.87676 0.90474 0.96823 0.94939 0.95304 0.90717 0.96292 0.91283 0.92008 0.84297 0.91344 0.91162 0.93292 0.90912 0.87978 0.89453 0.89651 0.81713 0.84004 0.87885 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.38 37.16 0.35 -2.41 16 2 C -0.15 -3.40 5.44 -26.73 -0.15 -3.55 16 3 C 0.20 4.89 1.81 -68.87 -0.12 4.76 16 4 H 0.03 0.79 6.36 -51.93 -0.33 0.46 16 5 C -0.57 -15.47 7.18 -34.44 -0.25 -15.72 16 6 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 7 C 0.02 0.50 5.29 -17.82 -0.09 0.40 16 8 N -0.92 -26.60 13.20 55.43 0.73 -25.87 16 9 Si 1.07 25.16 29.91 -169.99 -5.08 20.08 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.65 -14.25 5.76 -102.17 -0.59 -14.84 16 14 C 0.07 1.22 2.02 -68.86 -0.14 1.08 16 15 H 0.05 0.86 5.08 -51.93 -0.26 0.60 16 16 C -0.13 -2.20 9.09 37.15 0.34 -1.86 16 17 C 0.52 8.80 6.72 -10.98 -0.07 8.72 16 18 O -0.52 -10.49 15.76 5.56 0.09 -10.40 16 19 N -0.62 -8.10 2.92 -173.33 -0.51 -8.60 16 20 C 0.12 1.27 6.41 -3.63 -0.02 1.25 16 21 C -0.06 -0.61 6.43 -27.45 -0.18 -0.79 16 22 C -0.17 -1.69 6.39 -35.24 -0.23 -1.92 16 23 S 0.09 0.81 23.31 -107.50 -2.51 -1.70 16 24 C -0.21 -1.79 11.20 28.89 0.32 -1.47 16 25 C -0.12 -1.10 10.00 -41.09 -0.41 -1.51 16 26 C -0.12 -1.29 5.85 -104.90 -0.61 -1.90 16 27 C 0.17 1.86 6.35 -4.28 -0.03 1.83 16 28 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.72 6.88 -51.93 -0.36 1.36 16 31 H 0.02 0.37 6.97 -51.93 -0.36 0.01 16 32 H 0.07 1.67 6.16 -51.93 -0.32 1.35 16 33 H 0.27 7.64 5.61 -40.82 -0.23 7.41 16 34 H 0.34 7.47 6.11 -39.29 -0.24 7.23 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.24 7.15 -51.93 -0.37 0.87 16 37 H 0.05 0.69 7.78 -51.93 -0.40 0.29 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.10 1.22 7.02 -51.93 -0.36 0.86 16 40 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.10 1.15 5.31 -51.93 -0.28 0.87 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -31.29 361.65 -10.16 -41.45 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.45 Total: 7.50 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.29 Total: -13.07 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.36 Total: -49.32 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.29 -10.16 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565667254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.257 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds